Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0011962

Physical Location & Seq

Genomic Coordinates Forward (+)

21892309 .. 21910642

Gene Structure 18334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG190000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGAGCAACATAAGCATGGTGGAGGCAAAGTTGCCCCCTGGTTTTAGGTTCCATCCCAGAGATGAAGAGCTGGTCTGTGATTATCTGATGAAGAAGGTGACTCACTCCAACTCCACTCTCATGATCGAAGTCGACCTCAACAAGTGTGAGCCTTGGGACATTCCTGAAAGTGCATGTGTCGGAGGAAAGGAATGGTATTTCTACAGTCAGCGTGATCGGAAATATGCGACGGGGCTTCGAACAAACCGAGCAACTGCAACTGGGTATTGGAAGGCCACCGGAAAAGACAGGCCAATCTTTCGCAAAGGAACAACCCTAGTGGGTATGAGGAAAACCTTGGTGTTCTACCAGGGTAGGGCTCCCAAAGGCAGAAAATCCGACTGGGTGATGCATGAGTTCCGGCTTGAAGATCCCTTTGGTTCTCCCGAAATATCTTCACTCAAGGAAGATTGGGTTCTATGCAGGGTGTTTTACAAAAACAGAGAACTGATTGCTGCCAAACCCAGCATGGGATCGTCGATTAGCTGCTATGACGATGATACAGGCTCTTCGTCTCATCAGCTGCCAGCTCTGATGGACTCTTACATCAGCTTCGATGGCCAAACTCATCAACAGCAACAGCAACATCACCATGATTATGAGTATCAACATCATCAGCAAGTGCCCTGCTTCTCCATTGACACACTTTTCTCTCAAAACCAAGTGACTATCAACCCAATTTTCACCACTCAAAACAGCAACATTATGGAACAGAACGTACCCTCCACCGGCTGTGGCCAGTCGTCGAATGCGGCGACAACTACATTCCTTGACACTGCTAATTTTTCATGTGACAATAGGAAGGTACTGAAGGCTGTTTTGAGTCAGCTTACTAAGATGGAAAGCAACTGCTACCCTAGCACACCGTCGTCGGTCTTGAAAGGCTCATCACCACAAAGCTTCGGAGGAGAAGCTGCTGGAAGTAGTTCGGATAACTACCTGTCTGATCATCAAGTTGCTATGGGGATGATGGTCGAATTCGAGGATGGAGGTGGAAGGATTGCATATGGAGACCAAGTAAAGCCAGTACTTGACGTGGTGAATCCTCAACGTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090421 GO:0090696 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

365

Amino Acids

41.02

Weight (kDa)

6.42

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	12 - 135	1.3e-43	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56010 AT1G56010 AT3G12977 AT3G12977
fragaria_vesca	FvH4_3g16040
malus_domestica	MD10G1198400.v1.1
prunus_persica	Prupe.4G143600_v2.0.a1
pyrus_communis	pycom05g19830 pycom10g17110
rosa_chinensis	RchiOBHm_Chr5g0027011
rosa_laevigata	RLG00000032977 RLG00000032981
rosa_multiflora	Rmu_sc0000882.1_g000012
rosa_roxburghii	Rroxscaffold_1G00052480
rosa_rugosa	Rorug05G0096600
rosa_samantha	Rh5AG190000 Rh5BG187600 Rh5CG207400
rosa_wichuraiana	Rw5G017300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	132
AciI	CCGC	1 cut(s)	791
AclWI	GGATC	2 cut(s)	404, 520
AcoI	YGGCCR	2 cut(s)	598, 775
AcsI	RAATTY	1 cut(s)	1016
AcuI	CTGAAG	1 cut(s)	869
AfaI	GTAC	3 cut(s)	759, 846, 1068
AfiI	CCNNNNNNNGG	3 cut(s)	355, 509, 767
AgsI	TTSAA	2 cut(s)	407, 919
AjiI	CACGTC	1 cut(s)	1075
AjnI	CCWGG	2 cut(s)	37, 348
AjuI	GAANNNNNNNTTGG	2 cut(s)	399, 431
AloI	GAACNNNNNNTCC	2 cut(s)	746, 778
AluBI	AGCT	8 cut(s)	70, 525, 562, 569, 591, 868, 939, 953
AluI	AGCT	8 cut(s)	70, 525, 562, 569, 591, 868, 939, 953
Alw26I	GTCTC	2 cut(s)	558, 1044
AlwI	GGATC	2 cut(s)	404, 520
AoxI	GGCC	4 cut(s)	273, 290, 598, 775
ApeKI	GCWGC	4 cut(s)	494, 525, 562, 953
ApoI	RAATTY	1 cut(s)	1016
Asp700I	GAANNNNTTC	1 cut(s)	964
AsuHPI	GGTGA	6 cut(s)	109, 397, 620, 715, 921, 1090
AsuII	TTCGAA	1 cut(s)	238
BaeGI	GKGCMC	1 cut(s)	666
BalI	TGGCCA	2 cut(s)	600, 777
BanII	GRGCYC	1 cut(s)	361
BbvI	GCAGC	4 cut(s)	481, 512, 549, 940
BccI	CCATC	6 cut(s)	60, 568, 590, 871, 1003, 1019
BciT130I	CCWGG	2 cut(s)	39, 350
BclI	TGATCA	1 cut(s)	985
BcoDI	GTCTC	2 cut(s)	558, 1044
BfaI	CTAG	2 cut(s)	317, 897
BfmI	CTRYAG	1 cut(s)	202
BisI	GCNGC	5 cut(s)	495, 526, 563, 792, 954
BlsI	GCNGC	5 cut(s)	496, 527, 564, 793, 955
BmcAI	AGTACT	1 cut(s)	1068
Bme1390I	CCNGG	2 cut(s)	39, 350
BmgBI	CACGTC	1 cut(s)	1075
BmiI	GGNNCC	2 cut(s)	50, 360
BmrFI	CCNGG	2 cut(s)	39, 350
BmrI	ACTGGG	2 cut(s)	270, 391
BmsI	GCATC	1 cut(s)	378
BmuI	ACTGGG	2 cut(s)	270, 391
Bpu14I	TTCGAA	1 cut(s)	238
BpuEI	CTTGAG	1 cut(s)	425
BsaI	GGTCTC	1 cut(s)	1044
BsaJI	CCNNGG	4 cut(s)	37, 152, 336, 349
BsaWI	WCCGGW	1 cut(s)	278
BsaXI	ACNNNNNCTCC	8 cut(s)	14, 44, 95, 125, 746, 776, 1041, 1071
Bsc4I	CCNNNNNNNGG	3 cut(s)	355, 509, 767
Bse118I	RCCGGY	1 cut(s)	767
Bse1I	ACTGG	4 cut(s)	265, 386, 778, 1064
BseBI	CCWGG	2 cut(s)	39, 350
BseDI	CCNNGG	4 cut(s)	37, 152, 336, 349
BseGI	GGATG	3 cut(s)	52, 1011, 1030
BseLI	CCNNNNNNNGG	3 cut(s)	355, 509, 767
BseNI	ACTGG	4 cut(s)	265, 386, 778, 1064
BseRI	GAGGAG	1 cut(s)	960
BseSI	GKGCMC	1 cut(s)	666
BseXI	GCAGC	4 cut(s)	481, 512, 549, 940
BseYI	CCCAGC	1 cut(s)	503
BshFI	GGCC	4 cut(s)	275, 292, 600, 777
BsiSI	CCGG	3 cut(s)	279, 400, 768
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	3 cut(s)	355, 509, 767
BsmAI	GTCTC	2 cut(s)	558, 1044
BsmBI	CGTCTC	1 cut(s)	558
BsmFI	GGGAC	1 cut(s)	170
BsmI	GAATGC	1 cut(s)	793
BsnI	GGCC	4 cut(s)	275, 292, 600, 777
Bso31I	GGTCTC	1 cut(s)	1044
Bsp119I	TTCGAA	1 cut(s)	238
Bsp1286I	GDGCHC	2 cut(s)	361, 666
Bsp143I	GATC	5 cut(s)	123, 214, 409, 512, 985
BspACI	CCGC	1 cut(s)	791
BspANI	GGCC	4 cut(s)	275, 292, 600, 777
BspHI	TCATGA	1 cut(s)	120
BspLI	GGNNCC	2 cut(s)	50, 360
BspPI	GGATC	2 cut(s)	404, 520
BspQI	GCTCTTC	2 cut(s)	60, 553
BspT104I	TTCGAA	1 cut(s)	238
BspTNI	GGTCTC	1 cut(s)	1044
BsrFI	RCCGGY	1 cut(s)	767
BsrI	ACTGG	4 cut(s)	265, 386, 778, 1064
BssAI	RCCGGY	1 cut(s)	767
BssECI	CCNNGG	4 cut(s)	37, 152, 336, 349
BssMI	GATC	5 cut(s)	123, 214, 409, 512, 985
BssT1I	CCWWGG	2 cut(s)	152, 336
Bst2UI	CCWGG	2 cut(s)	39, 350
Bst4CI	ACNGT	2 cut(s)	206, 906
Bst6I	CTCTTC	2 cut(s)	60, 553
BstBI	TTCGAA	1 cut(s)	238
BstC8I	GCNNGC	1 cut(s)	567
BstDEI	CTNAG	1 cut(s)	873
BstF5I	GGATG	3 cut(s)	52, 1011, 1030
BstKTI	GATC	5 cut(s)	126, 217, 412, 515, 988
BstMAI	GTCTC	2 cut(s)	558, 1044
BstMBI	GATC	5 cut(s)	123, 214, 409, 512, 985
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 597, 897
BstNI	CCWGG	2 cut(s)	39, 350
BstNSI	RCATGY	1 cut(s)	177
BstSCI	CCNGG	2 cut(s)	37, 348
BstSFI	CTRYAG	1 cut(s)	202
BstSLI	GKGCMC	1 cut(s)	666
BstV1I	GCAGC	4 cut(s)	481, 512, 549, 940
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
BsuRI	GGCC	4 cut(s)	275, 292, 600, 777
BtrI	CACGTC	1 cut(s)	1075
BtsCI	GGATG	3 cut(s)	52, 1011, 1030
BtsI	GCAGTG	1 cut(s)	813
BtsIMutI	CAGTG	1 cut(s)	813
Cac8I	GCNNGC	1 cut(s)	567
CciI	TCATGA	1 cut(s)	120
Cfr10I	RCCGGY	1 cut(s)	767
Csp6I	GTAC	3 cut(s)	758, 845, 1067
CspCI	CAANNNNNGTGG	2 cut(s)	300, 335
CviAII	CATG	7 cut(s)	16, 121, 174, 392, 508, 632, 828
CviQI	GTAC	3 cut(s)	758, 845, 1067
DdeI	CTNAG	1 cut(s)	873
DpnI	GATC	5 cut(s)	125, 216, 411, 514, 987
DpnII	GATC	5 cut(s)	123, 214, 409, 512, 985
EaeI	YGGCCR	2 cut(s)	598, 775
Eam1104I	CTCTTC	2 cut(s)	60, 553
EarI	CTCTTC	2 cut(s)	60, 553
Eco130I	CCWWGG	2 cut(s)	152, 336
Eco24I	GRGCYC	1 cut(s)	361
Eco31I	GGTCTC	1 cut(s)	1044
Eco57I	CTGAAG	1 cut(s)	869
EcoRI	GAATTC	1 cut(s)	1016
EcoRII	CCWGG	2 cut(s)	37, 348
EcoT14I	CCWWGG	2 cut(s)	152, 336
EcoT22I	ATGCAT	1 cut(s)	393
EcoT38I	GRGCYC	1 cut(s)	361
ErhI	CCWWGG	2 cut(s)	152, 336
Esp3I	CGTCTC	1 cut(s)	558
FaeI	CATG	7 cut(s)	19, 124, 177, 395, 511, 635, 831
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	7 cut(s)	15, 120, 173, 391, 507, 631, 827
FauNDI	CATATG	1 cut(s)	1045
FbaI	TGATCA	1 cut(s)	985
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	5 cut(s)	495, 526, 563, 792, 954
FokI	GGATG	3 cut(s)	39, 1018, 1037
FriOI	GRGCYC	1 cut(s)	361
Fsp4HI	GCNGC	5 cut(s)	495, 526, 563, 792, 954
FspBI	CTAG	2 cut(s)	317, 897
GluI	GCNGC	5 cut(s)	495, 526, 563, 792, 954
GsaI	CCCAGC	1 cut(s)	507
HaeIII	GGCC	4 cut(s)	275, 292, 600, 777
HapII	CCGG	3 cut(s)	279, 400, 768
Hin1II	CATG	7 cut(s)	19, 124, 177, 395, 511, 635, 831
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HindIII	AAGCTT	1 cut(s)	937
HinfI	GANTC	4 cut(s)	100, 578, 862, 1081
HpaII	CCGG	3 cut(s)	279, 400, 768
HphI	GGTGA	6 cut(s)	109, 397, 620, 715, 921, 1090
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	8 cut(s)	87, 182, 219, 379, 573, 944, 970, 985
Hpy188III	TCNNGA	4 cut(s)	121, 164, 425, 916
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	5 cut(s)	232, 520, 787, 910, 913
HpyAV	CCTTC	5 cut(s)	88, 265, 835, 844, 1029
HpyCH4III	ACNGT	2 cut(s)	206, 906
HpyCH4IV	ACGT	3 cut(s)	756, 1074, 1090
HpyCH4V	TGCA	5 cut(s)	173, 257, 391, 462, 1043
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 597, 897
HpyF3I	CTNAG	1 cut(s)	873
HpySE526I	ACGT	3 cut(s)	756, 1074, 1090
Hsp92II	CATG	7 cut(s)	19, 124, 177, 395, 511, 635, 831
Ksp22I	TGATCA	1 cut(s)	985
Kzo9I	GATC	5 cut(s)	123, 214, 409, 512, 985
LguI	GCTCTTC	2 cut(s)	60, 553
LmnI	GCTCC	1 cut(s)	364
Lsp1109I	GCAGC	4 cut(s)	481, 512, 549, 940
LweI	GCATC	1 cut(s)	378
MaeI	CTAG	2 cut(s)	317, 897
MaeII	ACGT	3 cut(s)	756, 1074, 1090
MaeIII	GTNAC	3 cut(s)	97, 703, 830
MalI	GATC	5 cut(s)	125, 216, 411, 514, 987
MboI	GATC	5 cut(s)	123, 214, 409, 512, 985
MboII	GAAGA	6 cut(s)	77, 103, 419, 426, 458, 540
MflI	RGATCY	1 cut(s)	409
MhlI	GDGCHC	2 cut(s)	361, 666
MlsI	TGGCCA	2 cut(s)	600, 777
MluCI	AATT	3 cut(s)	717, 820, 1016
MluNI	TGGCCA	2 cut(s)	600, 777
MlyI	GAGTC	3 cut(s)	94, 572, 871
MmeI	TCCRAC	3 cut(s)	132, 160, 402
MnlI	CCTC	9 cut(s)	16, 146, 176, 321, 772, 938, 1015, 1022, 1095
Mox20I	TGGCCA	2 cut(s)	600, 777
Mph1103I	ATGCAT	1 cut(s)	393
MroXI	GAANNNNTTC	1 cut(s)	964
MscI	TGGCCA	2 cut(s)	600, 777
MslI	CAYNNNNRTG	4 cut(s)	14, 119, 630, 636
Msp20I	TGGCCA	2 cut(s)	600, 777
MspA1I	CMGCKG	1 cut(s)	562
MspI	CCGG	3 cut(s)	279, 400, 768
MspR9I	CCNGG	2 cut(s)	39, 350
Mva1269I	GAATGC	1 cut(s)	793
MvaI	CCWGG	2 cut(s)	39, 350
MwoI	GCNNNNNNNGC	3 cut(s)	12, 597, 897
NdeI	CATATG	1 cut(s)	1045
NdeII	GATC	5 cut(s)	123, 214, 409, 512, 985
NlaIII	CATG	7 cut(s)	19, 124, 177, 395, 511, 635, 831
NlaIV	GGNNCC	2 cut(s)	50, 360
NmuCI	GTSAC	3 cut(s)	97, 703, 830
NsiI	ATGCAT	1 cut(s)	393
NspI	RCATGY	1 cut(s)	177
NspV	TTCGAA	1 cut(s)	238
PagI	TCATGA	1 cut(s)	120
PciSI	GCTCTTC	2 cut(s)	60, 553
PcsI	WCGNNNNNNNCGW	2 cut(s)	244, 791
PctI	GAATGC	1 cut(s)	793
PdmI	GAANNNNTTC	1 cut(s)	964
PfeI	GAWTC	1 cut(s)	1081
PkrI	GCNGC	5 cut(s)	496, 527, 564, 793, 955
PleI	GAGTC	3 cut(s)	94, 572, 870
PpsI	GAGTC	3 cut(s)	94, 572, 870
Psp6I	CCWGG	2 cut(s)	37, 348
PspFI	CCCAGC	1 cut(s)	503
PspGI	CCWGG	2 cut(s)	37, 348
PspN4I	GGNNCC	2 cut(s)	50, 360
PsrI	GAACNNNNNNTAC	2 cut(s)	741, 773
PsuI	RGATCY	1 cut(s)	409
PvuII	CAGCTG	1 cut(s)	562
RsaI	GTAC	3 cut(s)	759, 846, 1068
RsaNI	GTAC	3 cut(s)	758, 845, 1067
RseI	CAYNNNNRTG	4 cut(s)	14, 119, 630, 636
SalI	GTCGAC	1 cut(s)	131
SapI	GCTCTTC	2 cut(s)	60, 553
SatI	GCNGC	5 cut(s)	495, 526, 563, 792, 954
Sau3AI	GATC	5 cut(s)	123, 214, 409, 512, 985
ScaI	AGTACT	1 cut(s)	1068
SchI	GAGTC	3 cut(s)	94, 572, 871
ScrFI	CCNGG	2 cut(s)	39, 350
SduI	GDGCHC	2 cut(s)	361, 666
SfaNI	GCATC	1 cut(s)	378
SfcI	CTRYAG	1 cut(s)	202
SfuI	TTCGAA	1 cut(s)	238
SmiMI	CAYNNNNRTG	4 cut(s)	14, 119, 630, 636
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
Sse9I	AATT	3 cut(s)	717, 820, 1016
SsiI	CCGC	1 cut(s)	791
SspMI	CTAG	2 cut(s)	317, 897
StyD4I	CCNGG	2 cut(s)	37, 348
StyI	CCWWGG	2 cut(s)	152, 336
TaaI	ACNGT	2 cut(s)	206, 906
TaiI	ACGT	3 cut(s)	759, 1077, 1093
TaqI	TCGA	8 cut(s)	126, 132, 238, 518, 594, 785, 1014, 1020
TaqII	GACCGA	1 cut(s)	901
TasI	AATT	3 cut(s)	717, 820, 1016
TatI	WGTACW	1 cut(s)	1066
TauI	GCSGC	1 cut(s)	794
TfiI	GAWTC	1 cut(s)	1081
TscAI	CASTG	1 cut(s)	820
TseFI	GTSAC	3 cut(s)	97, 703, 830
TseI	GCWGC	4 cut(s)	494, 525, 562, 953
Tsp45I	GTSAC	3 cut(s)	97, 703, 830
TspDTI	ATGAA	3 cut(s)	78, 104, 816
TspRI	CASTG	1 cut(s)	820
XapI	RAATTY	1 cut(s)	1016
XceI	RCATGY	1 cut(s)	177
XcmI	CCANNNNNNNNNTGG	1 cut(s)	505
XmiI	GTMKAC	1 cut(s)	132
XmnI	GAANNNNTTC	1 cut(s)	964
XspI	CTAG	2 cut(s)	317, 897
ZrmI	AGTACT	1 cut(s)	1068
Zsp2I	ATGCAT	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.