Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0011962

Physical Location & Seq

Genomic Coordinates Forward (+)

21674177 .. 21676215

Gene Structure 2039 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032981

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGTTTGACATGGCAGAAAGTGCATGTGTCGGGGGAAAGGAATGGTATTTCTACAGTCATCGTGATCGGAAATATGCGACGGGGCTTCGAACAAACCGAGCAACTGCAACTGGGTATTGGAAGGCCACCGGAAAAGACAGGCCAATCTTTAGTAAAGGAACAACCCTAGTGGGTATGAGGAAAACCTTGGTGTTCTACCAGGGTAGGGCTCCCAAAGGCAGAAAATCCGACTGGGTGATGCATGAGTTCCGGCTTGAAGATCCCTTTGGTTCTCCCAAAATATCTTCACTCAAGGAAGATTGGGTTCTATGCAGGGTGTTTTACAAAAACAGAGAACTAATTGCTGCCAAACCCAGCATGGGATCGTCGATTAGCTGCTATGACGATGATACAGGCTCTTTGTCTCATCAGCTGCCAGCTCTGATGGACTCTTACATCAGCTTCGATGGCCAAACTCATCAACAGCAACAGCAACATCACCATGATAATGAGTATCATCATCATCAGCAAGTGCCCTGCTTCTCCATTGACACACTTTTCTCTCAAAACGAAGTGCCTACCAACCCAATTTTCACCACTCATAACAGCAACATTATGGAACAGAACGTACCCTCCTCCGGCTGTAGCCAGTTGTCGAATGCGGCGACAACTACATTCCTTGACACTGCTAATTTTTCATGTGACAATAGGAAGGTACTGAAAGCTGTTTTGAGTCAGCTTACCAAGATGGAAAGCAGCTGCTACCCTAACACACCGTCGTCGGTCTTGAAAGGCTCATCACCACAAAGCTTCGGAGGAGAAGCTGCTGGAAGTAGTTCGGATAACTACCTGTCTGATCATCAAGTTGGTATGTCCAACGTTTGGATTCACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090421 GO:0090696 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

292

Amino Acids

32.69

Weight (kDa)

7.2

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	6 - 85	7.1e-26	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0011962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56010 AT1G56010 AT3G12977 AT3G12977
fragaria_vesca	FvH4_3g16040
malus_domestica	MD10G1198400.v1.1
prunus_persica	Prupe.4G143600_v2.0.a1
pyrus_communis	pycom05g19830 pycom10g17110
rosa_chinensis	RchiOBHm_Chr5g0027011
rosa_laevigata	RLG00000032977 RLG00000032981
rosa_multiflora	Rmu_sc0000882.1_g000012
rosa_roxburghii	Rroxscaffold_1G00052480
rosa_rugosa	Rorug05G0096600
rosa_samantha	Rh5AG190000 Rh5BG187600 Rh5CG207400
rosa_wichuraiana	Rw5G017300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	861
AciI	CCGC	1 cut(s)	641
AclI	AACGTT	1 cut(s)	858
AclWI	GGATC	2 cut(s)	254, 370
AcoI	YGGCCR	1 cut(s)	448
AfaI	GTAC	2 cut(s)	609, 696
AfiI	CCNNNNNNNGG	4 cut(s)	205, 359, 617, 861
AgsI	TTSAA	2 cut(s)	257, 769
AjnI	CCWGG	1 cut(s)	198
AjuI	GAANNNNNNNTTGG	4 cut(s)	249, 281, 554, 586
AloI	GAACNNNNNNTCC	2 cut(s)	596, 628
AluBI	AGCT	9 cut(s)	375, 412, 419, 441, 704, 718, 738, 789, 803
AluI	AGCT	9 cut(s)	375, 412, 419, 441, 704, 718, 738, 789, 803
Alw26I	GTCTC	1 cut(s)	408
AlwI	GGATC	2 cut(s)	254, 370
AoxI	GGCC	3 cut(s)	123, 140, 448
ApeKI	GCWGC	6 cut(s)	344, 375, 412, 735, 738, 803
Asp700I	GAANNNNTTC	1 cut(s)	814
AsuHPI	GGTGA	4 cut(s)	247, 470, 565, 771
AsuII	TTCGAA	1 cut(s)	88
BaeGI	GKGCMC	1 cut(s)	516
BalI	TGGCCA	1 cut(s)	450
BanII	GRGCYC	1 cut(s)	211
BbvI	GCAGC	6 cut(s)	331, 362, 399, 725, 747, 790
BccI	CCATC	3 cut(s)	418, 440, 721
BciT130I	CCWGG	1 cut(s)	200
BclI	TGATCA	1 cut(s)	835
BcoDI	GTCTC	1 cut(s)	408
BfaI	CTAG	1 cut(s)	167
BfmI	CTRYAG	2 cut(s)	52, 622
BisI	GCNGC	7 cut(s)	345, 376, 413, 642, 736, 739, 804
BlsI	GCNGC	7 cut(s)	346, 377, 414, 643, 737, 740, 805
Bme1390I	CCNGG	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	210
BmrFI	CCNGG	1 cut(s)	200
BmrI	ACTGGG	2 cut(s)	120, 241
BmsI	GCATC	1 cut(s)	228
BmuI	ACTGGG	2 cut(s)	120, 241
Bpu14I	TTCGAA	1 cut(s)	88
BpuEI	CTTGAG	1 cut(s)	275
BsaJI	CCNNGG	2 cut(s)	186, 199
BsaWI	WCCGGW	1 cut(s)	128
BsaXI	ACNNNNNCTCC	2 cut(s)	596, 626
Bsc4I	CCNNNNNNNGG	4 cut(s)	205, 359, 617, 861
Bse1I	ACTGG	3 cut(s)	115, 236, 628
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	2 cut(s)	186, 199
BseLI	CCNNNNNNNGG	4 cut(s)	205, 359, 617, 861
BseNI	ACTGG	3 cut(s)	115, 236, 628
BseRI	GAGGAG	2 cut(s)	604, 810
BseSI	GKGCMC	1 cut(s)	516
BseXI	GCAGC	6 cut(s)	331, 362, 399, 725, 747, 790
BseYI	CCCAGC	1 cut(s)	353
BshFI	GGCC	3 cut(s)	125, 142, 450
BsiSI	CCGG	3 cut(s)	129, 250, 618
BslI	CCNNNNNNNGG	4 cut(s)	205, 359, 617, 861
BsmAI	GTCTC	1 cut(s)	408
BsmI	GAATGC	1 cut(s)	643
BsnI	GGCC	3 cut(s)	125, 142, 450
Bsp119I	TTCGAA	1 cut(s)	88
Bsp1286I	GDGCHC	2 cut(s)	211, 516
Bsp143I	GATC	4 cut(s)	64, 259, 362, 835
BspACI	CCGC	1 cut(s)	641
BspANI	GGCC	3 cut(s)	125, 142, 450
BspLI	GGNNCC	1 cut(s)	210
BspPI	GGATC	2 cut(s)	254, 370
BspT104I	TTCGAA	1 cut(s)	88
BsrI	ACTGG	3 cut(s)	115, 236, 628
BssECI	CCNNGG	2 cut(s)	186, 199
BssMI	GATC	4 cut(s)	64, 259, 362, 835
BssT1I	CCWWGG	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	2 cut(s)	56, 756
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstBI	TTCGAA	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	417
BstKTI	GATC	4 cut(s)	67, 262, 365, 838
BstMAI	GTCTC	1 cut(s)	408
BstMBI	GATC	4 cut(s)	64, 259, 362, 835
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 447
BstNI	CCWGG	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	198
BstSFI	CTRYAG	2 cut(s)	52, 622
BstSLI	GKGCMC	1 cut(s)	516
BstV1I	GCAGC	6 cut(s)	331, 362, 399, 725, 747, 790
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BsuRI	GGCC	3 cut(s)	125, 142, 450
BtsI	GCAGTG	1 cut(s)	663
BtsIMutI	CAGTG	1 cut(s)	663
Cac8I	GCNNGC	1 cut(s)	417
Csp6I	GTAC	2 cut(s)	608, 695
CspCI	CAANNNNNGTGG	2 cut(s)	150, 185
CviAII	CATG	6 cut(s)	10, 24, 242, 358, 482, 678
CviQI	GTAC	2 cut(s)	608, 695
DpnI	GATC	4 cut(s)	66, 261, 364, 837
DpnII	GATC	4 cut(s)	64, 259, 362, 835
EaeI	YGGCCR	1 cut(s)	448
Eco130I	CCWWGG	1 cut(s)	186
Eco24I	GRGCYC	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	186
EcoT22I	ATGCAT	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	6 cut(s)	13, 27, 245, 361, 485, 681
FatI	CATG	6 cut(s)	9, 23, 241, 357, 481, 677
FbaI	TGATCA	1 cut(s)	835
Fnu4HI	GCNGC	7 cut(s)	345, 376, 413, 642, 736, 739, 804
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	7 cut(s)	345, 376, 413, 642, 736, 739, 804
FspBI	CTAG	1 cut(s)	167
GluI	GCNGC	7 cut(s)	345, 376, 413, 642, 736, 739, 804
GsaI	CCCAGC	1 cut(s)	357
HaeIII	GGCC	3 cut(s)	125, 142, 450
HapII	CCGG	3 cut(s)	129, 250, 618
Hin1II	CATG	6 cut(s)	13, 27, 245, 361, 485, 681
HindIII	AAGCTT	1 cut(s)	787
HinfI	GANTC	3 cut(s)	428, 712, 865
HpaII	CCGG	3 cut(s)	129, 250, 618
HphI	GGTGA	4 cut(s)	247, 470, 565, 771
Hpy188I	TCNGA	6 cut(s)	69, 229, 423, 794, 820, 835
Hpy188III	TCNNGA	2 cut(s)	62, 766
Hpy99I	CGWCG	4 cut(s)	82, 370, 760, 763
HpyAV	CCTTC	2 cut(s)	115, 685
HpyCH4III	ACNGT	2 cut(s)	56, 756
HpyCH4IV	ACGT	2 cut(s)	606, 858
HpyCH4V	TGCA	4 cut(s)	23, 107, 241, 312
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 447
HpySE526I	ACGT	2 cut(s)	606, 858
Hsp92II	CATG	6 cut(s)	13, 27, 245, 361, 485, 681
Ksp22I	TGATCA	1 cut(s)	835
Kzo9I	GATC	4 cut(s)	64, 259, 362, 835
LmnI	GCTCC	1 cut(s)	214
Lsp1109I	GCAGC	6 cut(s)	331, 362, 399, 725, 747, 790
LweI	GCATC	1 cut(s)	228
MaeI	CTAG	1 cut(s)	167
MaeII	ACGT	2 cut(s)	606, 858
MaeIII	GTNAC	1 cut(s)	680
MalI	GATC	4 cut(s)	66, 261, 364, 837
MboI	GATC	4 cut(s)	64, 259, 362, 835
MboII	GAAGA	3 cut(s)	269, 276, 308
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	2 cut(s)	211, 516
MlsI	TGGCCA	1 cut(s)	450
MluCI	AATT	3 cut(s)	339, 567, 670
MluNI	TGGCCA	1 cut(s)	450
MlyI	GAGTC	2 cut(s)	422, 721
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	4 cut(s)	171, 622, 625, 788
Mox20I	TGGCCA	1 cut(s)	450
Mph1103I	ATGCAT	1 cut(s)	243
MroXI	GAANNNNTTC	1 cut(s)	814
MscI	TGGCCA	1 cut(s)	450
MslI	CAYNNNNRTG	2 cut(s)	480, 486
Msp20I	TGGCCA	1 cut(s)	450
MspA1I	CMGCKG	2 cut(s)	412, 738
MspI	CCGG	3 cut(s)	129, 250, 618
MspR9I	CCNGG	1 cut(s)	200
Mva1269I	GAATGC	1 cut(s)	643
MvaI	CCWGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	2 cut(s)	20, 447
NdeII	GATC	4 cut(s)	64, 259, 362, 835
NlaIII	CATG	6 cut(s)	13, 27, 245, 361, 485, 681
NlaIV	GGNNCC	1 cut(s)	210
NmuCI	GTSAC	1 cut(s)	680
NsiI	ATGCAT	1 cut(s)	243
NspI	RCATGY	1 cut(s)	27
NspV	TTCGAA	1 cut(s)	88
PcsI	WCGNNNNNNNCGW	2 cut(s)	94, 641
PctI	GAATGC	1 cut(s)	643
PdmI	GAANNNNTTC	1 cut(s)	814
PfeI	GAWTC	1 cut(s)	865
PflMI	CCANNNNNTGG	1 cut(s)	861
PkrI	GCNGC	7 cut(s)	346, 377, 414, 643, 737, 740, 805
PleI	GAGTC	2 cut(s)	422, 720
PpsI	GAGTC	2 cut(s)	422, 720
Psp1406I	AACGTT	1 cut(s)	858
Psp6I	CCWGG	1 cut(s)	198
PspFI	CCCAGC	1 cut(s)	353
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	210
PsrI	GAACNNNNNNTAC	2 cut(s)	591, 623
PsuI	RGATCY	1 cut(s)	259
PvuII	CAGCTG	2 cut(s)	412, 738
RsaI	GTAC	2 cut(s)	609, 696
RsaNI	GTAC	2 cut(s)	608, 695
RseI	CAYNNNNRTG	2 cut(s)	480, 486
SatI	GCNGC	7 cut(s)	345, 376, 413, 642, 736, 739, 804
Sau3AI	GATC	4 cut(s)	64, 259, 362, 835
SchI	GAGTC	2 cut(s)	422, 721
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	2 cut(s)	211, 516
SfaNI	GCATC	1 cut(s)	228
SfcI	CTRYAG	2 cut(s)	52, 622
SfuI	TTCGAA	1 cut(s)	88
SmiMI	CAYNNNNRTG	2 cut(s)	480, 486
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	3 cut(s)	339, 567, 670
SsiI	CCGC	1 cut(s)	641
SspMI	CTAG	1 cut(s)	167
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	2 cut(s)	56, 756
TaiI	ACGT	2 cut(s)	609, 861
TaqI	TCGA	4 cut(s)	88, 368, 444, 635
TaqII	GACCGA	1 cut(s)	751
TasI	AATT	3 cut(s)	339, 567, 670
TauI	GCSGC	1 cut(s)	644
TfiI	GAWTC	1 cut(s)	865
TscAI	CASTG	1 cut(s)	670
TseFI	GTSAC	1 cut(s)	680
TseI	GCWGC	6 cut(s)	344, 375, 412, 735, 738, 803
Tsp45I	GTSAC	1 cut(s)	680
TspDTI	ATGAA	1 cut(s)	666
TspRI	CASTG	1 cut(s)	670
Van91I	CCANNNNNTGG	1 cut(s)	861
XceI	RCATGY	1 cut(s)	27
XcmI	CCANNNNNNNNNTGG	1 cut(s)	355
XmnI	GAANNNNTTC	1 cut(s)	814
XspI	CTAG	1 cut(s)	167
Zsp2I	ATGCAT	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.