Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011962

Physical Location & Seq

Genomic Coordinates Forward (+)

4143524 .. 4146037

Gene Structure 2514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G12977.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGAGGAGACAGAAAAGAATAAGGGCAGCATAAGTATGGTTGAGGCTAATCTACCTCCTGGTTTTAGATTCCATCCTAGAGACGACGAGCTCGTCTGTGACTACTTAATGAGAAGAACCGTTCGCAGCCTCTATCAACCAGTTGTCTTGATCGACGTCGATCTTAACAAATGCGAGCCTTGGGACATTCCTCAAACGGCGAGAGTGGGAGGGAAAGAATGGTACTTTTACAGCCAAAAAGACCGTAAATACGCAACAGGCTACAGAACAAACCGGGCTACGGCCACCGGTTATTGGAAAGCCACCGGGAAAGATAGAGCAATCCAAAGAAACGGTGGTCTTGTGGGTATGAGAAAGACACTTGTGTTTTACCGAGGTCGATCCCCTAAAGGTCGTAAAACTGATTGGGTCATGCATGAGTTTCGTCTCCAAGGAAAACTTCTTCACCACTCCCCTAATTCTCTCGAGGAAGAGTGGGTATTGTGTAGAGTTTTCCACAAGAACAGCAACGGAGCTGATATAGACGACATCACAAGGAGCTGCTCTGATGCAACAGCTTCTGCATTCATGGACTCTTACATCAACTTCGACCATCATCACATCATCAATCAGCATGTACCCTGCTTCTCCAATAATTTGTCACATAACCAAACCAACCAATCCGGTTTAATCTCCAAGAACTCCAGCCCATTGTTTAATGCTTCCCCTGATCAAATGATTCTCAGAACTTTGCTAAGTCAACTCACAAAAAAAGTCGAAGAATCACAGAGTCGTGGAGACGGAAGCTCAGAGAGCCAATTGACCGACATTGGCATCCCAAGCCATGCATGGAATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090421 GO:0090696 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

279

Amino Acids

31.95

Weight (kDa)

8.72

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	19 - 143	4e-43	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56010 AT1G56010 AT3G12977 AT3G12977
fragaria_vesca	FvH4_3g16040
malus_domestica	MD10G1198400.v1.1
prunus_persica	Prupe.4G143600_v2.0.a1
pyrus_communis	pycom05g19830 pycom10g17110
rosa_chinensis	RchiOBHm_Chr5g0027011
rosa_laevigata	RLG00000032977 RLG00000032981
rosa_multiflora	Rmu_sc0000882.1_g000012
rosa_roxburghii	Rroxscaffold_1G00052480
rosa_rugosa	Rorug05G0096600
rosa_samantha	Rh5AG190000 Rh5BG187600 Rh5CG207400
rosa_wichuraiana	Rw5G017300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
AatII	GACGTC	1 cut(s)	159
AclWI	GGATC	1 cut(s)	375
AcoI	YGGCCR	1 cut(s)	282
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	2 cut(s)	224, 618
AfiI	CCNNNNNNNGG	2 cut(s)	280, 294
AgeI	ACCGGT	1 cut(s)	287
AjnI	CCWGG	1 cut(s)	58
AjuI	GAANNNNNNNTTGG	2 cut(s)	423, 455
AluBI	AGCT	5 cut(s)	91, 515, 540, 557, 786
AluI	AGCT	5 cut(s)	91, 515, 540, 557, 786
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	4 cut(s)	2, 75, 431, 771
AlwI	GGATC	1 cut(s)	375
AlwNI	CAGNNNCTG	1 cut(s)	560
Ama87I	CYCGRG	1 cut(s)	464
AoxI	GGCC	1 cut(s)	282
ApeKI	GCWGC	3 cut(s)	27, 126, 540
AsiGI	ACCGGT	1 cut(s)	287
AsuC2I	CCSGG	2 cut(s)	275, 307
AsuHPI	GGTGA	1 cut(s)	437
AvaI	CYCGRG	1 cut(s)	464
BanII	GRGCYC	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	3 cut(s)	39, 138, 527
BccI	CCATC	2 cut(s)	81, 600
BceAI	ACGGC	2 cut(s)	213, 297
BcgI	CGANNNNNNTGC	2 cut(s)	404, 438
BciT130I	CCWGG	1 cut(s)	60
BclI	TGATCA	1 cut(s)	709
BcnI	CCSGG	2 cut(s)	275, 307
BcoDI	GTCTC	4 cut(s)	2, 75, 431, 771
BfaI	CTAG	1 cut(s)	78
BfmI	CTRYAG	1 cut(s)	262
BisI	GCNGC	3 cut(s)	28, 127, 541
BlsI	GCNGC	3 cut(s)	29, 128, 542
Bme1390I	CCNGG	3 cut(s)	60, 275, 307
BmeT110I	CYCGRG	1 cut(s)	464
BmrFI	CCNGG	3 cut(s)	60, 275, 307
BmsI	GCATC	2 cut(s)	538, 822
BpmI	CTGGAG	1 cut(s)	667
BpuMI	CCSGG	2 cut(s)	275, 307
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	3 cut(s)	179, 373, 430
BsaWI	WCCGGW	2 cut(s)	287, 662
Bsc4I	CCNNNNNNNGG	2 cut(s)	280, 294
Bse118I	RCCGGY	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	140
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	3 cut(s)	179, 373, 430
BseGI	GGATG	2 cut(s)	73, 813
BseLI	CCNNNNNNNGG	2 cut(s)	280, 294
BseMII	CTCAG	2 cut(s)	736, 801
BseNI	ACTGG	1 cut(s)	140
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	3 cut(s)	39, 138, 527
BshFI	GGCC	1 cut(s)	284
BshTI	ACCGGT	1 cut(s)	287
BsiHKAI	GWGCWC	1 cut(s)	93
BsiHKCI	CYCGRG	1 cut(s)	464
BsiSI	CCGG	4 cut(s)	274, 288, 306, 663
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	280, 294
BsmAI	GTCTC	4 cut(s)	2, 75, 431, 771
BsmBI	CGTCTC	3 cut(s)	75, 431, 771
BsmFI	GGGAC	1 cut(s)	197
BsmI	GAATGC	1 cut(s)	563
BsnI	GGCC	1 cut(s)	284
BsoBI	CYCGRG	1 cut(s)	464
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	4 cut(s)	150, 160, 380, 709
BspANI	GGCC	1 cut(s)	284
BspCNI	CTCAG	2 cut(s)	735, 800
BspPI	GGATC	1 cut(s)	375
BsrFI	RCCGGY	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	140
BssAI	RCCGGY	1 cut(s)	287
BssECI	CCNNGG	3 cut(s)	179, 373, 430
BssMI	GATC	4 cut(s)	150, 160, 380, 709
BssNI	GRCGYC	1 cut(s)	156
BssT1I	CCWWGG	2 cut(s)	179, 430
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	3 cut(s)	121, 245, 335
Bst6I	CTCTTC	1 cut(s)	465
BstACI	GRCGYC	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	176
BstDEI	CTNAG	3 cut(s)	722, 734, 787
BstF5I	GGATG	2 cut(s)	73, 813
BstKTI	GATC	4 cut(s)	153, 163, 383, 712
BstMAI	GTCTC	4 cut(s)	2, 75, 431, 771
BstMBI	GATC	4 cut(s)	150, 160, 380, 709
BstMWI	GCNNNNNNNGC	2 cut(s)	792, 819
BstNI	CCWGG	1 cut(s)	60
BstNSI	RCATGY	1 cut(s)	617
BstSCI	CCNGG	3 cut(s)	58, 273, 305
BstSFI	CTRYAG	1 cut(s)	262
BstV1I	GCAGC	3 cut(s)	39, 138, 527
BsuRI	GGCC	1 cut(s)	284
BtsCI	GGATG	2 cut(s)	73, 813
Cac8I	GCNNGC	1 cut(s)	176
CaiI	CAGNNNCTG	1 cut(s)	560
Cfr10I	RCCGGY	1 cut(s)	287
Csp6I	GTAC	2 cut(s)	223, 617
CspAI	ACCGGT	1 cut(s)	287
CviAII	CATG	6 cut(s)	412, 416, 568, 614, 824, 828
CviQI	GTAC	2 cut(s)	223, 617
DdeI	CTNAG	3 cut(s)	722, 734, 787
DpnI	GATC	4 cut(s)	152, 162, 382, 711
DpnII	GATC	4 cut(s)	150, 160, 380, 709
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
EaeI	YGGCCR	1 cut(s)	282
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
Ecl136II	GAGCTC	1 cut(s)	91
Eco130I	CCWWGG	2 cut(s)	179, 430
Eco24I	GRGCYC	1 cut(s)	93
Eco53kI	GAGCTC	1 cut(s)	91
Eco88I	CYCGRG	1 cut(s)	464
EcoICRI	GAGCTC	1 cut(s)	91
EcoRII	CCWGG	1 cut(s)	58
EcoT14I	CCWWGG	2 cut(s)	179, 430
EcoT22I	ATGCAT	2 cut(s)	417, 829
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	2 cut(s)	179, 430
Esp3I	CGTCTC	3 cut(s)	75, 431, 771
FaeI	CATG	6 cut(s)	415, 419, 571, 617, 827, 831
FalI	AAGNNNNNCTT	2 cut(s)	423, 455
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	6 cut(s)	411, 415, 567, 613, 823, 827
FbaI	TGATCA	1 cut(s)	709
Fnu4HI	GCNGC	3 cut(s)	28, 127, 541
FokI	GGATG	2 cut(s)	60, 800
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	3 cut(s)	28, 127, 541
FspBI	CTAG	1 cut(s)	78
GluI	GCNGC	3 cut(s)	28, 127, 541
GsuI	CTGGAG	1 cut(s)	667
HaeIII	GGCC	1 cut(s)	284
HapII	CCGG	4 cut(s)	274, 288, 306, 663
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	6 cut(s)	415, 419, 571, 617, 827, 831
HincII	GTYRAC	1 cut(s)	740
HindII	GTYRAC	1 cut(s)	740
HinfI	GANTC	5 cut(s)	69, 572, 718, 761, 769
HpaII	CCGG	4 cut(s)	274, 288, 306, 663
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	1 cut(s)	740
Hpy188I	TCNGA	3 cut(s)	547, 725, 790
Hpy188III	TCNNGA	2 cut(s)	148, 464
Hpy8I	GTNNAC	1 cut(s)	740
Hpy99I	CGWCG	3 cut(s)	89, 158, 161
HpyCH4III	ACNGT	3 cut(s)	121, 245, 335
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	4 cut(s)	415, 551, 563, 827
HpyF10VI	GCNNNNNNNGC	2 cut(s)	792, 819
HpyF3I	CTNAG	3 cut(s)	722, 734, 787
HpySE526I	ACGT	1 cut(s)	156
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	6 cut(s)	415, 419, 571, 617, 827, 831
Ksp22I	TGATCA	1 cut(s)	709
Kzo9I	GATC	4 cut(s)	150, 160, 380, 709
LmnI	GCTCC	2 cut(s)	512, 537
Lsp1109I	GCAGC	3 cut(s)	39, 138, 527
LweI	GCATC	2 cut(s)	538, 822
MaeI	CTAG	1 cut(s)	78
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	2 cut(s)	98, 639
MalI	GATC	4 cut(s)	152, 162, 382, 711
MboI	GATC	4 cut(s)	150, 160, 380, 709
MboII	GAAGA	4 cut(s)	126, 434, 482, 770
MfeI	CAATTG	1 cut(s)	797
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	4 cut(s)	457, 634, 797, 832
MlyI	GAGTC	2 cut(s)	566, 778
MnlI	CCTC	7 cut(s)	37, 66, 140, 201, 203, 368, 460
Mph1103I	ATGCAT	2 cut(s)	417, 829
MseI	TTAA	4 cut(s)	107, 165, 668, 696
MslI	CAYNNNNRTG	1 cut(s)	35
MspI	CCGG	4 cut(s)	274, 288, 306, 663
MspR9I	CCNGG	3 cut(s)	60, 275, 307
MunI	CAATTG	1 cut(s)	797
Mva1269I	GAATGC	1 cut(s)	563
MvaI	CCWGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	2 cut(s)	792, 819
NciI	CCSGG	2 cut(s)	275, 307
NdeII	GATC	4 cut(s)	150, 160, 380, 709
NlaIII	CATG	6 cut(s)	415, 419, 571, 617, 827, 831
NmuCI	GTSAC	2 cut(s)	98, 639
NsiI	ATGCAT	2 cut(s)	417, 829
NspI	RCATGY	1 cut(s)	617
PaeR7I	CTCGAG	1 cut(s)	464
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PctI	GAATGC	1 cut(s)	563
PfeI	GAWTC	3 cut(s)	69, 718, 761
PinAI	ACCGGT	1 cut(s)	287
PkrI	GCNGC	3 cut(s)	29, 128, 542
PleI	GAGTC	2 cut(s)	566, 777
PpsI	GAGTC	2 cut(s)	566, 777
Psp124BI	GAGCTC	1 cut(s)	93
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PstNI	CAGNNNCTG	1 cut(s)	560
RsaI	GTAC	2 cut(s)	224, 618
RsaNI	GTAC	2 cut(s)	223, 617
RseI	CAYNNNNRTG	1 cut(s)	35
SacI	GAGCTC	1 cut(s)	93
SaqAI	TTAA	4 cut(s)	107, 165, 668, 696
SatI	GCNGC	3 cut(s)	28, 127, 541
Sau3AI	GATC	4 cut(s)	150, 160, 380, 709
SchI	GAGTC	2 cut(s)	566, 778
ScrFI	CCNGG	3 cut(s)	60, 275, 307
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	9 cut(s)	58, 93, 159, 379, 394, 517, 542, 559, 788
SfaNI	GCATC	2 cut(s)	538, 822
SfcI	CTRYAG	1 cut(s)	262
Sfr274I	CTCGAG	1 cut(s)	464
SlaI	CTCGAG	1 cut(s)	464
SmiMI	CAYNNNNRTG	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	4 cut(s)	457, 634, 797, 832
SspMI	CTAG	1 cut(s)	78
SstI	GAGCTC	1 cut(s)	93
StyD4I	CCNGG	3 cut(s)	58, 273, 305
StyI	CCWWGG	2 cut(s)	179, 430
TaaI	ACNGT	3 cut(s)	121, 245, 335
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	6 cut(s)	153, 159, 379, 465, 588, 756
TaqII	GACCGA	1 cut(s)	818
TasI	AATT	4 cut(s)	457, 634, 797, 832
TfiI	GAWTC	3 cut(s)	69, 718, 761
Tru1I	TTAA	4 cut(s)	107, 165, 668, 696
Tru9I	TTAA	4 cut(s)	107, 165, 668, 696
TseFI	GTSAC	2 cut(s)	98, 639
TseI	GCWGC	3 cut(s)	27, 126, 540
Tsp45I	GTSAC	2 cut(s)	98, 639
TspDTI	ATGAA	1 cut(s)	556
TspGWI	ACGGA	2 cut(s)	525, 795
XceI	RCATGY	1 cut(s)	617
XcmI	CCANNNNNNNNNTGG	2 cut(s)	332, 825
XhoI	CTCGAG	1 cut(s)	464
XspI	CTAG	1 cut(s)	78
ZraI	GACGTC	1 cut(s)	157
Zsp2I	ATGCAT	2 cut(s)	417, 829

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.