Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010186

Physical Location & Seq

Genomic Coordinates Reverse (-)

20977541 .. 20979448

Gene Structure 1908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G56090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCGTCAGCGGTGACGGCGTCAGGCAAGGTGGAGAAAGGACATCAGCTATATAGAGACGGCAAGTATAAGGAGGCGCTTCTCTTCTATACGGAGGCTCTTACTGCTGCTAAAGCTAAACCACAGAAGATCGCTCTTCACAGCAACCGCGCCGCTTGTTACTTGAAATTGCACGATTTCATTAAGGCAGCAGAAGAATGCACTTGTGTTCTTGAGCTTGATCAGAAACATAGCGGAGCGTTGATGCTGAGGGCTCAGACTTTAGTCACTCTTAAAGAATACCAATCTGCTCTTTTTGATGTCACCAGGCTTATGGAGTTGAACCCTGATTCTGAGGTTTATCAGAACCTCGAAGCTCGCTTGAGGACGCAGTTGTCCCTTGCTCCAATTCCTGAGTCTGAAGCAGAATTGGAAGAAGAGAGTGACGTTGAACAAGACGCTGAAGATAAAGAAAGTAGAGAAGTTGAGCTTGGTGTCAATGAGAGAAGAGATAAGAGGTTTGAGTCGGTAGTTTCCCTTAGAAGAGATCTAGAGACTACAGGAGAAGATGCGATAAACAAGGGGGAAGTTGTTGCACCTAAAACACCAGAGGTTAGAGAACAGAACAGCAAGGAAGTGCCAATGTCTGGAAAGCAATCTAATGCATGGCAAGCCATACCTAAGCCTAAGGGTCATTCAACACTCGATTACGCCCGTTGGAATACAGTTGAAGATGATTCCAGTGAAGAAGAAGACGATGAAGACAGCGATGACAGTGATGAGTCGCCACCTCAGTACAGATTCCGTGTTAAGACAGTCGGGGTGCGTCCTGTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19 TPR_8

Protein Analysis

272

Amino Acids

30.7

Weight (kDa)

4.87

Isoelectric Point (pI)

53.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56090 AT1G56090
fragaria_vesca	FvH4_3g15510
malus_domestica	MD05G1222700.v1.1 MD10G1204300.v1.1
prunus_persica	Prupe.4G137600_v2.0.a1 Prupe.4G137600_v2.0.a1
pyrus_communis	pycom05g20530 pycom10g17500
rosa_chinensis	RchiOBHm_Chr5g0026131
rosa_laevigata	RLG00000032904
rosa_multiflora	Rmu_sc0002806.1_g000005 Rmu_sc0002909.1_g000020
rosa_roxburghii	Rroxscaffold_1G00053180
rosa_rugosa	Rorug05G0090900
rosa_samantha	Rh5AG183700 Rh5BG180400 Rh5CG199500 Rh5DG182100
rosa_wichuraiana	Rw0G015710 Rw5G016630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	373
AccB7I	CCANNNNNTGG	1 cut(s)	626
AccII	CGCG	1 cut(s)	150
AciI	CCGC	4 cut(s)	11, 148, 153, 234
AcuI	CTGAAG	2 cut(s)	420, 462
AcyI	GRCGYC	2 cut(s)	5, 20
AfaI	GTAC	1 cut(s)	776
AfiI	CCNNNNNNNGG	1 cut(s)	626
AgsI	TTSAA	5 cut(s)	166, 322, 431, 678, 710
AjnI	CCWGG	1 cut(s)	305
AjuI	GAANNNNNNNTTGG	2 cut(s)	453, 485
AluBI	AGCT	5 cut(s)	49, 116, 217, 356, 469
AluI	AGCT	5 cut(s)	49, 116, 217, 356, 469
Alw26I	GTCTC	2 cut(s)	51, 527
ApeKI	GCWGC	2 cut(s)	107, 188
AspLEI	GCGC	2 cut(s)	79, 152
AsuHPI	GGTGA	2 cut(s)	25, 295
AxyI	CCTNAGG	1 cut(s)	666
BanII	GRGCYC	1 cut(s)	256
BbsI	GAAGAC	2 cut(s)	738, 747
BbvCI	CCTCAGC	1 cut(s)	248
BbvI	GCAGC	2 cut(s)	94, 200
BceAI	ACGGC	2 cut(s)	33, 76
BciT130I	CCWGG	1 cut(s)	307
BclI	TGATCA	1 cut(s)	220
BcoDI	GTCTC	2 cut(s)	51, 527
BfaI	CTAG	1 cut(s)	530
BfmI	CTRYAG	1 cut(s)	537
BfoI	RGCGCY	1 cut(s)	80
BglII	AGATCT	1 cut(s)	526
BisI	GCNGC	3 cut(s)	108, 153, 189
BlsI	GCNGC	3 cut(s)	109, 154, 190
Bme1390I	CCNGG	1 cut(s)	307
BmrFI	CCNGG	1 cut(s)	307
BmsI	GCATC	2 cut(s)	234, 538
BoxI	GACNNNNGTC	1 cut(s)	263
BpiI	GAAGAC	2 cut(s)	738, 747
Bpu10I	CCTNAGC	2 cut(s)	248, 660
BpuEI	CTTGAG	2 cut(s)	233, 382
BsaHI	GRCGYC	2 cut(s)	5, 20
Bsc4I	CCNNNNNNNGG	1 cut(s)	626
Bse1I	ACTGG	1 cut(s)	720
Bse21I	CCTNAGG	1 cut(s)	666
BseBI	CCWGG	1 cut(s)	307
BseLI	CCNNNNNNNGG	1 cut(s)	626
BseMII	CTCAG	5 cut(s)	239, 269, 324, 384, 785
BseNI	ACTGG	1 cut(s)	720
BseXI	GCAGC	2 cut(s)	94, 200
Bsh1236I	CGCG	1 cut(s)	150
BslFI	GGGAC	1 cut(s)	361
BslI	CCNNNNNNNGG	1 cut(s)	626
BsmAI	GTCTC	2 cut(s)	51, 527
BsmBI	CGTCTC	1 cut(s)	51
BsmFI	GGGAC	1 cut(s)	361
BsmI	GAATGC	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	256
Bsp143I	GATC	3 cut(s)	129, 220, 526
BspACI	CCGC	4 cut(s)	11, 148, 153, 234
BspCNI	CTCAG	5 cut(s)	240, 268, 325, 385, 784
BspFNI	CGCG	1 cut(s)	150
BspQI	GCTCTTC	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	720
BssMI	GATC	3 cut(s)	129, 220, 526
BssNI	GRCGYC	2 cut(s)	5, 20
Bst2UI	CCWGG	1 cut(s)	307
Bst4CI	ACNGT	3 cut(s)	706, 755, 796
Bst6I	CTCTTC	5 cut(s)	89, 141, 411, 481, 517
BstACI	GRCGYC	2 cut(s)	5, 20
BstC8I	GCNNGC	2 cut(s)	358, 651
BstDEI	CTNAG	8 cut(s)	248, 255, 333, 393, 518, 660, 666, 771
BstFNI	CGCG	1 cut(s)	150
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	2 cut(s)	79, 152
BstKTI	GATC	3 cut(s)	132, 223, 529
BstMAI	GTCTC	2 cut(s)	51, 527
BstMBI	GATC	3 cut(s)	129, 220, 526
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 104, 113, 650
BstNI	CCWGG	1 cut(s)	307
BstPAI	GACNNNNGTC	1 cut(s)	263
BstSCI	CCNGG	1 cut(s)	305
BstSFI	CTRYAG	1 cut(s)	537
BstUI	CGCG	1 cut(s)	150
BstV1I	GCAGC	2 cut(s)	94, 200
BstV2I	GAAGAC	2 cut(s)	738, 747
BstX2I	RGATCY	1 cut(s)	526
BstXI	CCANNNNNNTGG	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	526
Bsu36I	CCTNAGG	1 cut(s)	666
BtgZI	GCGATG	1 cut(s)	762
BtsIMutI	CAGTG	2 cut(s)	727, 760
Cac8I	GCNNGC	2 cut(s)	358, 651
CfoI	GCGC	2 cut(s)	79, 152
CseI	GACGC	4 cut(s)	9, 376, 446, 794
Csp6I	GTAC	1 cut(s)	775
CviAII	CATG	1 cut(s)	645
CviQI	GTAC	1 cut(s)	775
DdeI	CTNAG	8 cut(s)	248, 255, 333, 393, 518, 660, 666, 771
DpnI	GATC	3 cut(s)	131, 222, 528
DpnII	GATC	3 cut(s)	129, 220, 526
DrdI	GACNNNNNNGTC	1 cut(s)	373
DseDI	GACNNNNNNGTC	1 cut(s)	373
Eam1104I	CTCTTC	5 cut(s)	89, 141, 411, 481, 517
EarI	CTCTTC	5 cut(s)	89, 141, 411, 481, 517
Eco24I	GRGCYC	1 cut(s)	256
Eco57I	CTGAAG	2 cut(s)	420, 462
Eco81I	CCTNAGG	1 cut(s)	666
EcoRII	CCWGG	1 cut(s)	305
EcoT22I	ATGCAT	1 cut(s)	646
EcoT38I	GRGCYC	1 cut(s)	256
Esp3I	CGTCTC	1 cut(s)	51
FaeI	CATG	1 cut(s)	648
FaiI	YATR	8 cut(s)	52, 54, 69, 90, 231, 314, 646, 656
FalI	AAGNNNNNCTT	2 cut(s)	453, 485
FaqI	GGGAC	1 cut(s)	361
FatI	CATG	1 cut(s)	644
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	3 cut(s)	108, 153, 189
FriOI	GRGCYC	1 cut(s)	256
Fsp4HI	GCNGC	3 cut(s)	108, 153, 189
FspBI	CTAG	1 cut(s)	530
GlaI	GCGC	2 cut(s)	78, 151
GluI	GCNGC	3 cut(s)	108, 153, 189
HaeII	RGCGCY	1 cut(s)	80
HgaI	GACGC	4 cut(s)	9, 376, 446, 794
HhaI	GCGC	2 cut(s)	79, 152
Hin1I	GRCGYC	2 cut(s)	5, 20
Hin1II	CATG	1 cut(s)	648
Hin6I	GCGC	2 cut(s)	77, 150
HinP1I	GCGC	2 cut(s)	77, 150
HinfI	GANTC	6 cut(s)	329, 395, 503, 716, 761, 780
HphI	GGTGA	2 cut(s)	25, 295
Hpy188I	TCNGA	5 cut(s)	225, 258, 334, 345, 400
Hpy188III	TCNNGA	4 cut(s)	212, 392, 530, 627
HpyCH4III	ACNGT	3 cut(s)	706, 755, 796
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	4 cut(s)	172, 201, 575, 644
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 104, 113, 650
HpyF3I	CTNAG	8 cut(s)	248, 255, 333, 393, 518, 660, 666, 771
HpySE526I	ACGT	1 cut(s)	426
Hsp92I	GRCGYC	2 cut(s)	5, 20
Hsp92II	CATG	1 cut(s)	648
HspAI	GCGC	2 cut(s)	77, 150
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	129, 220, 526
LguI	GCTCTTC	1 cut(s)	141
LmnI	GCTCC	2 cut(s)	236, 388
LpnPI	CCDG	9 cut(s)	9, 292, 319, 339, 405, 525, 600, 612, 733
Lsp1109I	GCAGC	2 cut(s)	94, 200
LweI	GCATC	2 cut(s)	234, 538
MaeI	CTAG	1 cut(s)	530
MaeII	ACGT	1 cut(s)	426
MaeIII	GTNAC	5 cut(s)	13, 158, 265, 301, 422
MalI	GATC	3 cut(s)	131, 222, 528
MboI	GATC	3 cut(s)	129, 220, 526
MflI	RGATCY	1 cut(s)	526
MhlI	GDGCHC	1 cut(s)	256
MluCI	AATT	3 cut(s)	167, 387, 407
MlyI	GAGTC	3 cut(s)	404, 512, 770
MmeI	TCCRAC	1 cut(s)	677
MnlI	CCTC	9 cut(s)	67, 88, 243, 328, 357, 359, 489, 583, 780
Mph1103I	ATGCAT	1 cut(s)	646
MseI	TTAA	3 cut(s)	183, 273, 789
MspA1I	CMGCKG	1 cut(s)	11
MspR9I	CCNGG	1 cut(s)	307
Mva1269I	GAATGC	1 cut(s)	203
MvaI	CCWGG	1 cut(s)	307
MvnI	CGCG	1 cut(s)	150
MwoI	GCNNNNNNNGC	4 cut(s)	17, 104, 113, 650
NdeII	GATC	3 cut(s)	129, 220, 526
NlaIII	CATG	1 cut(s)	648
NmuCI	GTSAC	4 cut(s)	13, 265, 301, 422
NsiI	ATGCAT	1 cut(s)	646
PciSI	GCTCTTC	1 cut(s)	141
PctI	GAATGC	1 cut(s)	203
PfeI	GAWTC	3 cut(s)	329, 716, 780
PflFI	GACNNNGTC	1 cut(s)	19
PflMI	CCANNNNNTGG	1 cut(s)	626
PkrI	GCNGC	3 cut(s)	109, 154, 190
PleI	GAGTC	3 cut(s)	403, 511, 769
PpsI	GAGTC	3 cut(s)	403, 511, 769
PshAI	GACNNNNGTC	1 cut(s)	263
Psp6I	CCWGG	1 cut(s)	305
PspGI	CCWGG	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	526
PsyI	GACNNNGTC	1 cut(s)	19
RsaI	GTAC	1 cut(s)	776
RsaNI	GTAC	1 cut(s)	775
SapI	GCTCTTC	1 cut(s)	141
SaqAI	TTAA	3 cut(s)	183, 273, 789
SatI	GCNGC	3 cut(s)	108, 153, 189
Sau3AI	GATC	3 cut(s)	129, 220, 526
SchI	GAGTC	3 cut(s)	404, 512, 770
ScrFI	CCNGG	1 cut(s)	307
SduI	GDGCHC	1 cut(s)	256
SfaNI	GCATC	2 cut(s)	234, 538
SfcI	CTRYAG	1 cut(s)	537
SmlI	CTYRAG	2 cut(s)	212, 361
SmoI	CTYRAG	2 cut(s)	212, 361
Sse9I	AATT	3 cut(s)	167, 387, 407
SsiI	CCGC	4 cut(s)	11, 148, 153, 234
SspMI	CTAG	1 cut(s)	530
StyD4I	CCNGG	1 cut(s)	305
TaaI	ACNGT	3 cut(s)	706, 755, 796
TaiI	ACGT	1 cut(s)	429
TaqI	TCGA	2 cut(s)	351, 684
TasI	AATT	3 cut(s)	167, 387, 407
TatI	WGTACW	1 cut(s)	774
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	3 cut(s)	329, 716, 780
Tru1I	TTAA	3 cut(s)	183, 273, 789
Tru9I	TTAA	3 cut(s)	183, 273, 789
TscAI	CASTG	2 cut(s)	727, 760
TseFI	GTSAC	4 cut(s)	13, 265, 301, 422
TseI	GCWGC	2 cut(s)	107, 188
Tsp45I	GTSAC	4 cut(s)	13, 265, 301, 422
TspDTI	ATGAA	2 cut(s)	169, 753
TspGWI	ACGGA	2 cut(s)	107, 773
TspRI	CASTG	2 cut(s)	727, 760
Tth111I	GACNNNGTC	1 cut(s)	19
Van91I	CCANNNNNTGG	1 cut(s)	626
XbaI	TCTAGA	1 cut(s)	529
XspI	CTAG	1 cut(s)	530
Zsp2I	ATGCAT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.