Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002909.1

Orthogroup ID

OG0010186

Physical Location & Seq

Genomic Coordinates Forward (+)

117960 .. 120589

Gene Structure 2630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002909.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ctgtctcagctccgcctctccagctttgtaaatcacatttcacagtcactactccatccccaaactccgtctctctccgatagactgaacagctggacggctgagattggccggatggcatcggcggcgccggcgaacaagatcgagcgggcccacctcatgtaccgggaagggaggtaccaggaggccctgggattctacaccgaagccctgtccatggccaagaccaaaccccagaagattgccctccacagcaacagagccgcttgcttcctcaagcttcacgatttcaaaaaggctgcagaggaatgtacctcagtgcttgagcttgattacaatcacactggagcattgatgttgcgggctcagaccctggtgacactaaaggagtaccgttcagcactctttgatgttaataggctcatagagttaaatccatcatccgaagtgtatcagaaccttgaagcccgtttaaggacgcaagtgtcactggctccaatacccgagtccgaagcagagctagaagaagaggaagaagaagaggatgaagcagggccaaatagatatggggagagagaagagcaatatataggaaaagaagatgtagtacctttgagggaaggaagggatcagcttgctgaggttaataggactactattgctgatgtcatcccactcaagacaccaacaaaccaggactctgctgaacaagtaagggatccaaaagaaaactctattaagactacttccccggctgaagttacaccagataacatcaaagtatcacctgaaaaagaaaagggatggcaagcaatcccaaaaccaaagggacactcttctctggattatggaaggtgggacagtgtggaggatgactctagcgaagatgatgacgatgatgatgaggaagagtctcgaccacagtatcggttccgtgtaaaaactgttggtgttcggccggtaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19 TPR_8

Protein Analysis

322

Amino Acids

36.52

Weight (kDa)

4.96

Isoelectric Point (pI)

53.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56090 AT1G56090
fragaria_vesca	FvH4_3g15510
malus_domestica	MD05G1222700.v1.1 MD10G1204300.v1.1
prunus_persica	Prupe.4G137600_v2.0.a1 Prupe.4G137600_v2.0.a1
pyrus_communis	pycom05g20530 pycom10g17500
rosa_chinensis	RchiOBHm_Chr5g0026131
rosa_laevigata	RLG00000032904
rosa_multiflora	Rmu_sc0002806.1_g000005 Rmu_sc0002909.1_g000020
rosa_roxburghii	Rroxscaffold_1G00053180
rosa_rugosa	Rorug05G0090900
rosa_samantha	Rh5AG183700 Rh5BG180400 Rh5CG199500 Rh5DG182100
rosa_wichuraiana	Rw0G015710 Rw5G016630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	484
Acc65I	GGTACC	1 cut(s)	177
AccB1I	GGYRCC	2 cut(s)	127, 177
AccBSI	CCGCTC	1 cut(s)	148
AciI	CCGC	5 cut(s)	13, 125, 148, 264, 361
AclWI	GGATC	3 cut(s)	636, 713, 726
AcoI	YGGCCR	3 cut(s)	109, 219, 956
AcuI	CTGAAG	1 cut(s)	777
AcyI	GRCGYC	1 cut(s)	128
AfaI	GTAC	5 cut(s)	164, 179, 313, 392, 609
AfiI	CCNNNNNNNGG	2 cut(s)	217, 474
AgsI	TTSAA	2 cut(s)	292, 464
AjnI	CCWGG	4 cut(s)	180, 189, 372, 693
AluBI	AGCT	7 cut(s)	10, 24, 93, 280, 328, 520, 634
AluI	AGCT	7 cut(s)	10, 24, 93, 280, 328, 520, 634
Alw26I	GTCTC	3 cut(s)	9, 75, 918
AlwI	GGATC	3 cut(s)	636, 713, 726
AlwNI	CAGNNNCTG	1 cut(s)	373
Ama87I	CYCGRG	1 cut(s)	503
AoxI	GGCC	6 cut(s)	109, 150, 186, 219, 554, 956
ApaI	GGGCCC	1 cut(s)	154
ApeKI	GCWGC	1 cut(s)	299
Asp718I	GGTACC	1 cut(s)	177
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	4 cut(s)	150, 151, 187, 554
AsuC2I	CCSGG	2 cut(s)	167, 752
AsuHPI	GGTGA	2 cut(s)	388, 777
AvaI	CYCGRG	1 cut(s)	503
BaeGI	GKGCMC	1 cut(s)	154
BaeI	ACNNNNGTAYC	2 cut(s)	908, 941
BalI	TGGCCA	1 cut(s)	221
BamHI	GGATCC	1 cut(s)	718
BanI	GGYRCC	2 cut(s)	127, 177
BanII	GRGCYC	2 cut(s)	154, 367
BarI	GAAGNNNNNNTAC	2 cut(s)	591, 623
BbvCI	CCTCAGC	1 cut(s)	639
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	4 cut(s)	63, 109, 445, 798
BceAI	ACGGC	1 cut(s)	114
BciT130I	CCWGG	4 cut(s)	182, 191, 374, 695
BcnI	CCSGG	2 cut(s)	167, 752
BcoDI	GTCTC	3 cut(s)	9, 75, 918
BfaI	CTAG	2 cut(s)	521, 879
BfmI	CTRYAG	1 cut(s)	300
BfoI	RGCGCY	1 cut(s)	131
BisI	GCNGC	3 cut(s)	126, 264, 300
BlsI	GCNGC	3 cut(s)	127, 265, 301
Bme1390I	CCNGG	6 cut(s)	167, 182, 191, 374, 695, 752
BmeT110I	CYCGRG	1 cut(s)	503
BmgT120I	GGNCC	4 cut(s)	150, 151, 187, 554
BmiI	GGNNCC	6 cut(s)	129, 152, 179, 495, 720, 932
BmrFI	CCNGG	6 cut(s)	167, 182, 191, 374, 695, 752
BmsI	GCATC	1 cut(s)	128
BplI	GAGNNNNNCTC	2 cut(s)	860, 892
BpmI	CTGGAG	2 cut(s)	4, 366
Bpu10I	CCTNAGC	1 cut(s)	639
BpuEI	CTTGAG	3 cut(s)	260, 344, 662
BpuMI	CCSGG	2 cut(s)	167, 752
BsaBI	GATNNNNATC	1 cut(s)	336
BsaHI	GRCGYC	1 cut(s)	128
BsaJI	CCNNGG	5 cut(s)	189, 190, 216, 372, 750
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 474
Bse118I	RCCGGY	2 cut(s)	130, 958
Bse1I	ACTGG	2 cut(s)	349, 495
Bse8I	GATNNNNATC	1 cut(s)	336
BseBI	CCWGG	4 cut(s)	182, 191, 374, 695
BseDI	CCNNGG	5 cut(s)	189, 190, 216, 372, 750
BseGI	GGATG	7 cut(s)	55, 120, 440, 550, 669, 809, 877
BseJI	GATNNNNATC	1 cut(s)	336
BseLI	CCNNNNNNNGG	2 cut(s)	217, 474
BseMII	CTCAG	5 cut(s)	20, 93, 330, 380, 630
BseNI	ACTGG	2 cut(s)	349, 495
BseSI	GKGCMC	1 cut(s)	154
BseX3I	CGGCCG	1 cut(s)	956
BseXI	GCAGC	1 cut(s)	286
Bsh1285I	CGRYCG	1 cut(s)	959
BshFI	GGCC	6 cut(s)	111, 152, 188, 221, 556, 958
BshNI	GGYRCC	2 cut(s)	127, 177
BsiEI	CGRYCG	1 cut(s)	959
BsiHKCI	CYCGRG	1 cut(s)	503
BsiSI	CCGG	5 cut(s)	112, 131, 166, 752, 959
BslFI	GGGAC	2 cut(s)	843, 872
BslI	CCNNNNNNNGG	2 cut(s)	217, 474
BsmAI	GTCTC	3 cut(s)	9, 75, 918
BsmBI	CGTCTC	1 cut(s)	75
BsmFI	GGGAC	2 cut(s)	843, 872
BsnI	GGCC	6 cut(s)	111, 152, 188, 221, 556, 958
BsoBI	CYCGRG	1 cut(s)	503
Bsp120I	GGGCCC	1 cut(s)	150
Bsp1286I	GDGCHC	2 cut(s)	154, 367
Bsp143I	GATC	3 cut(s)	141, 628, 718
Bsp19I	CCATGG	1 cut(s)	216
BspACI	CCGC	5 cut(s)	13, 125, 148, 264, 361
BspANI	GGCC	6 cut(s)	111, 152, 188, 221, 556, 958
BspCNI	CTCAG	5 cut(s)	19, 94, 329, 379, 631
BspLI	GGNNCC	6 cut(s)	129, 152, 179, 495, 720, 932
BspMAI	CTGCAG	1 cut(s)	304
BspPI	GGATC	3 cut(s)	636, 713, 726
BspQI	GCTCTTC	1 cut(s)	573
BspT107I	GGYRCC	2 cut(s)	127, 177
BsrBI	CCGCTC	1 cut(s)	148
BsrFI	RCCGGY	2 cut(s)	130, 958
BsrI	ACTGG	2 cut(s)	349, 495
BssAI	RCCGGY	2 cut(s)	130, 958
BssECI	CCNNGG	5 cut(s)	189, 190, 216, 372, 750
BssMI	GATC	3 cut(s)	141, 628, 718
BssNI	GRCGYC	1 cut(s)	128
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	4 cut(s)	182, 191, 374, 695
Bst4CI	ACNGT	5 cut(s)	45, 395, 863, 924, 946
Bst6I	CTCTTC	5 cut(s)	522, 534, 573, 841, 903
BstACI	GRCGYC	1 cut(s)	128
BstC8I	GCNNGC	6 cut(s)	132, 150, 268, 363, 636, 810
BstDEI	CTNAG	5 cut(s)	6, 102, 316, 366, 639
BstDSI	CCRYGG	1 cut(s)	216
BstF5I	GGATG	7 cut(s)	55, 120, 440, 550, 669, 809, 877
BstH2I	RGCGCY	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	3 cut(s)	144, 631, 721
BstMAI	GTCTC	3 cut(s)	9, 75, 918
BstMBI	GATC	3 cut(s)	141, 628, 718
BstMCI	CGRYCG	1 cut(s)	959
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 125, 131
BstNI	CCWGG	4 cut(s)	182, 191, 374, 695
BstSCI	CCNGG	6 cut(s)	165, 180, 189, 372, 693, 750
BstSFI	CTRYAG	1 cut(s)	300
BstSLI	GKGCMC	1 cut(s)	154
BstV1I	GCAGC	1 cut(s)	286
BstX2I	RGATCY	1 cut(s)	718
BstYI	RGATCY	1 cut(s)	718
BstZI	CGGCCG	1 cut(s)	956
BsuRI	GGCC	6 cut(s)	111, 152, 188, 221, 556, 958
BtgI	CCRYGG	1 cut(s)	216
BtsCI	GGATG	7 cut(s)	55, 120, 440, 550, 669, 809, 877
BtsIMutI	CAGTG	4 cut(s)	324, 342, 488, 868
Cac8I	GCNNGC	6 cut(s)	132, 150, 268, 363, 636, 810
CaiI	CAGNNNCTG	1 cut(s)	373
CfoI	GCGC	1 cut(s)	130
Cfr10I	RCCGGY	2 cut(s)	130, 958
Cfr13I	GGNCC	4 cut(s)	150, 151, 187, 554
CseI	GACGC	1 cut(s)	487
Csp6I	GTAC	5 cut(s)	163, 178, 312, 391, 608
CviAII	CATG	2 cut(s)	160, 217
CviQI	GTAC	5 cut(s)	163, 178, 312, 391, 608
DdeI	CTNAG	5 cut(s)	6, 102, 316, 366, 639
DinI	GGCGCC	1 cut(s)	129
DpnI	GATC	3 cut(s)	143, 630, 720
DpnII	GATC	3 cut(s)	141, 628, 718
DrdI	GACNNNNNNGTC	1 cut(s)	484
DseDI	GACNNNNNNGTC	1 cut(s)	484
EaeI	YGGCCR	3 cut(s)	109, 219, 956
EagI	CGGCCG	1 cut(s)	956
Eam1104I	CTCTTC	5 cut(s)	522, 534, 573, 841, 903
EarI	CTCTTC	5 cut(s)	522, 534, 573, 841, 903
EclXI	CGGCCG	1 cut(s)	956
Eco130I	CCWWGG	1 cut(s)	216
Eco24I	GRGCYC	2 cut(s)	154, 367
Eco52I	CGGCCG	1 cut(s)	956
Eco57I	CTGAAG	1 cut(s)	777
Eco88I	CYCGRG	1 cut(s)	503
EcoO109I	RGGNCCY	1 cut(s)	187
EcoRII	CCWGG	4 cut(s)	180, 189, 372, 693
EcoT14I	CCWWGG	1 cut(s)	216
EcoT38I	GRGCYC	2 cut(s)	154, 367
EgeI	GGCGCC	1 cut(s)	129
EheI	GGCGCC	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	216
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	2 cut(s)	163, 220
FaiI	YATR	7 cut(s)	161, 218, 425, 567, 588, 590, 849
FaqI	GGGAC	2 cut(s)	843, 872
FatI	CATG	2 cut(s)	159, 216
FauI	CCCGC	2 cut(s)	141, 354
Fnu4HI	GCNGC	3 cut(s)	126, 264, 300
FokI	GGATG	7 cut(s)	42, 127, 427, 557, 656, 816, 884
FriOI	GRGCYC	2 cut(s)	154, 367
Fsp4HI	GCNGC	3 cut(s)	126, 264, 300
FspBI	CTAG	2 cut(s)	521, 879
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	3 cut(s)	126, 264, 300
GsuI	CTGGAG	2 cut(s)	4, 366
HaeII	RGCGCY	1 cut(s)	131
HaeIII	GGCC	6 cut(s)	111, 152, 188, 221, 556, 958
HapII	CCGG	5 cut(s)	112, 131, 166, 752, 959
HgaI	GACGC	1 cut(s)	487
HhaI	GCGC	1 cut(s)	130
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	2 cut(s)	163, 220
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HindIII	AAGCTT	1 cut(s)	278
HinfI	GANTC	5 cut(s)	195, 506, 698, 875, 911
HpaII	CCGG	5 cut(s)	112, 131, 166, 752, 959
HphI	GGTGA	2 cut(s)	388, 777
Hpy188I	TCNGA	5 cut(s)	79, 369, 445, 456, 511
Hpy188III	TCNNGA	4 cut(s)	284, 679, 842, 915
HpyAV	CCTTC	4 cut(s)	164, 614, 618, 846
HpyCH4III	ACNGT	5 cut(s)	45, 395, 863, 924, 946
HpyCH4V	TGCA	1 cut(s)	302
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 125, 131
HpyF3I	CTNAG	5 cut(s)	6, 102, 316, 366, 639
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	2 cut(s)	163, 220
HspAI	GCGC	1 cut(s)	128
KasI	GGCGCC	1 cut(s)	127
KpnI	GGTACC	1 cut(s)	181
KroI	GCCGGC	1 cut(s)	130
KroNI	GCCGGC	1 cut(s)	132
Kzo9I	GATC	3 cut(s)	141, 628, 718
LguI	GCTCTTC	1 cut(s)	573
LmnI	GCTCC	3 cut(s)	15, 347, 499
Lsp1109I	GCAGC	1 cut(s)	286
LweI	GCATC	1 cut(s)	128
MaeI	CTAG	2 cut(s)	521, 879
MaeIII	GTNAC	4 cut(s)	45, 376, 486, 760
MalI	GATC	3 cut(s)	143, 630, 720
MbiI	CCGCTC	1 cut(s)	148
MboI	GATC	3 cut(s)	141, 628, 718
MflI	RGATCY	1 cut(s)	718
MhlI	GDGCHC	2 cut(s)	154, 367
MlsI	TGGCCA	1 cut(s)	221
MluNI	TGGCCA	1 cut(s)	221
Mly113I	GGCGCC	1 cut(s)	128
MlyI	GAGTC	4 cut(s)	515, 692, 869, 920
Mox20I	TGGCCA	1 cut(s)	221
MreI	CGCCGGCG	1 cut(s)	130
MroNI	GCCGGC	1 cut(s)	130
MscI	TGGCCA	1 cut(s)	221
MseI	TTAA	5 cut(s)	414, 431, 473, 645, 738
Msp20I	TGGCCA	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	93
MspI	CCGG	5 cut(s)	112, 131, 166, 752, 959
MspR9I	CCNGG	6 cut(s)	167, 182, 191, 374, 695, 752
MvaI	CCWGG	4 cut(s)	182, 191, 374, 695
MwoI	GCNNNNNNNGC	3 cut(s)	21, 125, 131
NaeI	GCCGGC	1 cut(s)	132
NarI	GGCGCC	1 cut(s)	128
NciI	CCSGG	2 cut(s)	167, 752
NcoI	CCATGG	1 cut(s)	216
NdeII	GATC	3 cut(s)	141, 628, 718
NgoMIV	GCCGGC	1 cut(s)	130
NlaIII	CATG	2 cut(s)	163, 220
NlaIV	GGNNCC	6 cut(s)	129, 152, 179, 495, 720, 932
NmuCI	GTSAC	3 cut(s)	45, 376, 486
PasI	CCCWGGG	1 cut(s)	190
PciSI	GCTCTTC	1 cut(s)	573
PdiI	GCCGGC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	195
PkrI	GCNGC	3 cut(s)	127, 265, 301
PleI	GAGTC	4 cut(s)	514, 692, 869, 919
PluTI	GGCGCC	1 cut(s)	131
PpsI	GAGTC	4 cut(s)	514, 692, 869, 919
Psp6I	CCWGG	4 cut(s)	180, 189, 372, 693
PspGI	CCWGG	4 cut(s)	180, 189, 372, 693
PspN4I	GGNNCC	6 cut(s)	129, 152, 179, 495, 720, 932
PspOMI	GGGCCC	1 cut(s)	150
PspPI	GGNCC	4 cut(s)	150, 151, 187, 554
PstI	CTGCAG	1 cut(s)	304
PstNI	CAGNNNCTG	1 cut(s)	373
PsuI	RGATCY	1 cut(s)	718
PvuII	CAGCTG	1 cut(s)	93
RsaI	GTAC	5 cut(s)	164, 179, 313, 392, 609
RsaNI	GTAC	5 cut(s)	163, 178, 312, 391, 608
SapI	GCTCTTC	1 cut(s)	573
SaqAI	TTAA	5 cut(s)	414, 431, 473, 645, 738
SatI	GCNGC	3 cut(s)	126, 264, 300
Sau3AI	GATC	3 cut(s)	141, 628, 718
Sau96I	GGNCC	4 cut(s)	150, 151, 187, 554
SchI	GAGTC	4 cut(s)	515, 692, 869, 920
ScrFI	CCNGG	6 cut(s)	167, 182, 191, 374, 695, 752
SduI	GDGCHC	2 cut(s)	154, 367
SfaNI	GCATC	1 cut(s)	128
SfcI	CTRYAG	1 cut(s)	300
SfoI	GGCGCC	1 cut(s)	129
SgrAI	CRCCGGYG	1 cut(s)	130
SmlI	CTYRAG	3 cut(s)	275, 323, 677
SmoI	CTYRAG	3 cut(s)	275, 323, 677
SsiI	CCGC	5 cut(s)	13, 125, 148, 264, 361
SspDI	GGCGCC	1 cut(s)	127
SspMI	CTAG	2 cut(s)	521, 879
StyD4I	CCNGG	6 cut(s)	165, 180, 189, 372, 693, 750
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	5 cut(s)	45, 395, 863, 924, 946
TaqI	TCGA	2 cut(s)	144, 916
TauI	GCSGC	2 cut(s)	128, 266
TfiI	GAWTC	1 cut(s)	195
Tru1I	TTAA	5 cut(s)	414, 431, 473, 645, 738
Tru9I	TTAA	5 cut(s)	414, 431, 473, 645, 738
TscAI	CASTG	4 cut(s)	324, 349, 495, 868
TseFI	GTSAC	3 cut(s)	45, 376, 486
TseI	GCWGC	1 cut(s)	299
Tsp45I	GTSAC	3 cut(s)	45, 376, 486
TspDTI	ATGAA	1 cut(s)	561
TspGWI	ACGGA	2 cut(s)	57, 923
TspRI	CASTG	4 cut(s)	324, 349, 495, 868
XspI	CTAG	2 cut(s)	521, 879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.