Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010186

Physical Location & Seq

Genomic Coordinates Reverse (-)

7971707 .. 7972531

Gene Structure 825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0090900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCTTCTTCTTCTGCACCTGACGGCTTTAGGTACGATGTCTTTCTTAGTTTCAGAGGGAAGGACACCCGCAGGGCTTTTACCAGCCATCTTCGTGCGGCTTTAGATAGGGAGCAAATCAAAACCTACATAGATTACGAACTTAAGAGTGGAGAGGAAATTGGACCTGCCCTTCGTAAAGCAATTGAGGAATCAAAGCTTTCCGTGGTCATTTTGTCACAAAACTATGCTTCTTCCACATGGTGCTTGAATGAACTTGCTCATATTATAGAATGTAAAGAAAGATATCAACAATTGGTTATACCTATTTTTTACGAAGTAGATCCGTCACATGTACGCCACCAGAGCGAGAGTTATGAAGCTGCATTTGTTCAACATGAACAACATTACAAGCCAGACAAGGTGCGCAAGTGGAGGGATGCTTTAACTATAGCTTCCAACCTAGCTGGGTTTGATTCACACAGCTTTGGCCAGGAGTCCGAATTAGTTGAGGGAGTTGTCAAAGTTGTCGAAGACAATGTGATGAAGTTGAATCGCGAATGCTCAAGCGATTTGAAGGGCCTGGTTGGAATTGAAAGTCACATTACGCTATGCATTGCCCCACAAGATGTTGGTACGTCCGCCGCTCAATTTGCACACACAAATGTGTCCGAATTCTCCCTTATTTGTAATTGTTTTACAGTATTATATATAATAAGAACCGCTCATGTTCAAATCACTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19 TPR_8

Protein Analysis

241

Amino Acids

27.25

Weight (kDa)

5.8

Isoelectric Point (pI)

46.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	12 - 189	1.9e-54	TIR domain
TIR_2	PF13676	14 - 110	7.5e-17	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56090 AT1G56090
fragaria_vesca	FvH4_3g15510
malus_domestica	MD05G1222700.v1.1 MD10G1204300.v1.1
prunus_persica	Prupe.4G137600_v2.0.a1 Prupe.4G137600_v2.0.a1
pyrus_communis	pycom05g20530 pycom10g17500
rosa_chinensis	RchiOBHm_Chr5g0026131
rosa_laevigata	RLG00000032904
rosa_multiflora	Rmu_sc0002806.1_g000005 Rmu_sc0002909.1_g000020
rosa_roxburghii	Rroxscaffold_1G00053180
rosa_rugosa	Rorug05G0090900
rosa_samantha	Rh5AG183700 Rh5BG180400 Rh5CG199500 Rh5DG182100
rosa_wichuraiana	Rw0G015710 Rw5G016630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	724
Acc16I	TGCGCA	1 cut(s)	407
Acc36I	ACCTGC	1 cut(s)	175
AccBSI	CCGCTC	2 cut(s)	626, 704
AccII	CGCG	1 cut(s)	537
AciI	CCGC	5 cut(s)	70, 98, 621, 624, 702
AclWI	GGATC	1 cut(s)	317
AcoI	YGGCCR	1 cut(s)	469
AcsI	RAATTY	1 cut(s)	653
AdeI	CACNNNGTG	1 cut(s)	243
AfaI	GTAC	3 cut(s)	35, 336, 616
AflII	CTTAAG	1 cut(s)	143
AflIII	ACRYGT	1 cut(s)	331
AgsI	TTSAA	6 cut(s)	250, 374, 532, 556, 575, 713
AjnI	CCWGG	2 cut(s)	471, 561
AleI	CACNNNNGTG	1 cut(s)	644
AluBI	AGCT	5 cut(s)	199, 362, 434, 446, 465
AluI	AGCT	5 cut(s)	199, 362, 434, 446, 465
AlwI	GGATC	1 cut(s)	317
AoxI	GGCC	2 cut(s)	469, 559
ApeKI	GCWGC	1 cut(s)	362
ApoI	RAATTY	1 cut(s)	653
ArsI	GACNNNNNNTTYG	2 cut(s)	156, 188
AspLEI	GCGC	1 cut(s)	408
AspS9I	GGNCC	2 cut(s)	164, 559
AvaII	GGWCC	1 cut(s)	164
BalI	TGGCCA	1 cut(s)	471
BbsI	GAAGAC	1 cut(s)	519
BbvI	GCAGC	1 cut(s)	349
BccI	CCATC	1 cut(s)	96
BceAI	ACGGC	1 cut(s)	40
BciT130I	CCWGG	2 cut(s)	473, 563
BfaI	CTAG	1 cut(s)	443
BfmI	CTRYAG	1 cut(s)	429
BfrI	CTTAAG	1 cut(s)	143
BfuAI	ACCTGC	1 cut(s)	175
BisI	GCNGC	3 cut(s)	99, 363, 624
BlsI	GCNGC	3 cut(s)	100, 364, 625
Bme1390I	CCNGG	2 cut(s)	473, 563
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	2 cut(s)	164, 559
BmrFI	CCNGG	2 cut(s)	473, 563
BmsI	GCATC	1 cut(s)	409
BpiI	GAAGAC	1 cut(s)	519
BpuEI	CTTGAG	1 cut(s)	529
BsaJI	CCNNGG	1 cut(s)	204
Bse3DI	GCAATG	1 cut(s)	594
BseBI	CCWGG	2 cut(s)	473, 563
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	1 cut(s)	424
BseMI	GCAATG	1 cut(s)	594
BseXI	GCAGC	1 cut(s)	349
BseYI	CCCAGC	1 cut(s)	446
Bsh1236I	CGCG	1 cut(s)	537
BshFI	GGCC	2 cut(s)	471, 561
BsmI	GAATGC	1 cut(s)	545
BsnI	GGCC	2 cut(s)	471, 561
Bsp143I	GATC	1 cut(s)	322
Bsp68I	TCGCGA	1 cut(s)	537
BspACI	CCGC	5 cut(s)	70, 98, 621, 624, 702
BspANI	GGCC	2 cut(s)	471, 561
BspFNI	CGCG	1 cut(s)	537
BspMI	ACCTGC	1 cut(s)	175
BspPI	GGATC	1 cut(s)	317
BspTI	CTTAAG	1 cut(s)	143
BsrBI	CCGCTC	2 cut(s)	626, 704
BsrDI	GCAATG	1 cut(s)	594
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	1 cut(s)	322
Bst2UI	CCWGG	2 cut(s)	473, 563
Bst4CI	ACNGT	1 cut(s)	682
BstAFI	CTTAAG	1 cut(s)	143
BstDEI	CTNAG	1 cut(s)	47
BstDSI	CCRYGG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	424
BstFNI	CGCG	1 cut(s)	537
BstHHI	GCGC	1 cut(s)	408
BstKTI	GATC	1 cut(s)	325
BstMBI	GATC	1 cut(s)	322
BstMWI	GCNNNNNNNGC	2 cut(s)	345, 632
BstNI	CCWGG	2 cut(s)	473, 563
BstNSI	RCATGY	1 cut(s)	335
BstSCI	CCNGG	2 cut(s)	471, 561
BstSFI	CTRYAG	1 cut(s)	429
BstUI	CGCG	1 cut(s)	537
BstV1I	GCAGC	1 cut(s)	349
BstV2I	GAAGAC	1 cut(s)	519
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BsuRI	GGCC	2 cut(s)	471, 561
BtgI	CCRYGG	1 cut(s)	204
BtsCI	GGATG	1 cut(s)	424
BtuMI	TCGCGA	1 cut(s)	537
BveI	ACCTGC	1 cut(s)	175
CfoI	GCGC	1 cut(s)	408
Cfr13I	GGNCC	2 cut(s)	164, 559
Csp6I	GTAC	3 cut(s)	34, 335, 615
CviAII	CATG	4 cut(s)	240, 332, 377, 707
CviQI	GTAC	3 cut(s)	34, 335, 615
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	1 cut(s)	324
DpnII	GATC	1 cut(s)	322
DraIII	CACNNNGTG	1 cut(s)	243
EaeI	YGGCCR	1 cut(s)	469
EciI	GGCGGA	1 cut(s)	610
Eco32I	GATATC	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	164
EcoO109I	RGGNCCY	1 cut(s)	559
EcoRI	GAATTC	1 cut(s)	653
EcoRII	CCWGG	2 cut(s)	471, 561
EcoRV	GATATC	1 cut(s)	287
EcoT22I	ATGCAT	1 cut(s)	596
FaeI	CATG	4 cut(s)	243, 335, 380, 710
FatI	CATG	4 cut(s)	239, 331, 376, 706
FauI	CCCGC	1 cut(s)	77
Fnu4HI	GCNGC	3 cut(s)	99, 363, 624
FokI	GGATG	1 cut(s)	431
Fsp4HI	GCNGC	3 cut(s)	99, 363, 624
FspBI	CTAG	1 cut(s)	443
FspI	TGCGCA	1 cut(s)	407
GlaI	GCGC	1 cut(s)	407
GluI	GCNGC	3 cut(s)	99, 363, 624
GsaI	CCCAGC	1 cut(s)	450
HaeIII	GGCC	2 cut(s)	471, 561
HhaI	GCGC	1 cut(s)	408
Hin1II	CATG	4 cut(s)	243, 335, 380, 710
Hin6I	GCGC	1 cut(s)	406
HinP1I	GCGC	1 cut(s)	406
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	4 cut(s)	191, 455, 476, 532
Hpy188I	TCNGA	3 cut(s)	56, 481, 652
Hpy188III	TCNNGA	1 cut(s)	536
HpyAV	CCTTC	3 cut(s)	55, 182, 550
HpyCH4III	ACNGT	1 cut(s)	682
HpyCH4IV	ACGT	1 cut(s)	617
HpyCH4V	TGCA	4 cut(s)	17, 365, 594, 635
HpyF10VI	GCNNNNNNNGC	2 cut(s)	345, 632
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	1 cut(s)	617
Hsp92II	CATG	4 cut(s)	243, 335, 380, 710
HspAI	GCGC	1 cut(s)	406
Kzo9I	GATC	1 cut(s)	322
LmnI	GCTCC	1 cut(s)	112
Lsp1109I	GCAGC	1 cut(s)	349
LweI	GCATC	1 cut(s)	409
MaeI	CTAG	1 cut(s)	443
MaeII	ACGT	1 cut(s)	617
MaeIII	GTNAC	3 cut(s)	216, 327, 578
MalI	GATC	1 cut(s)	324
MbiI	CCGCTC	2 cut(s)	626, 704
MboI	GATC	1 cut(s)	322
MboII	GAAGA	4 cut(s)	3, 83, 225, 524
MfeI	CAATTG	2 cut(s)	183, 293
MflI	RGATCY	1 cut(s)	322
MlsI	TGGCCA	1 cut(s)	471
MluCI	AATT	8 cut(s)	159, 183, 293, 482, 570, 629, 653, 670
MluNI	TGGCCA	1 cut(s)	471
MlyI	GAGTC	1 cut(s)	485
MmeI	TCCRAC	2 cut(s)	462, 547
MnlI	CCTC	5 cut(s)	50, 148, 181, 408, 484
Mox20I	TGGCCA	1 cut(s)	471
Mph1103I	ATGCAT	1 cut(s)	596
MscI	TGGCCA	1 cut(s)	471
MseI	TTAA	2 cut(s)	144, 425
MslI	CAYNNNNRTG	3 cut(s)	93, 642, 644
Msp20I	TGGCCA	1 cut(s)	471
MspCI	CTTAAG	1 cut(s)	143
MspR9I	CCNGG	2 cut(s)	473, 563
MunI	CAATTG	2 cut(s)	183, 293
Mva1269I	GAATGC	1 cut(s)	545
MvaI	CCWGG	2 cut(s)	473, 563
MvnI	CGCG	1 cut(s)	537
MwoI	GCNNNNNNNGC	2 cut(s)	345, 632
NdeII	GATC	1 cut(s)	322
NlaIII	CATG	4 cut(s)	243, 335, 380, 710
NmuCI	GTSAC	3 cut(s)	216, 327, 578
NruI	TCGCGA	1 cut(s)	537
NsbI	TGCGCA	1 cut(s)	407
NsiI	ATGCAT	1 cut(s)	596
NspI	RCATGY	1 cut(s)	335
OliI	CACNNNNGTG	1 cut(s)	644
PciI	ACATGT	1 cut(s)	331
PctI	GAATGC	1 cut(s)	545
PfeI	GAWTC	3 cut(s)	191, 455, 532
PkrI	GCNGC	3 cut(s)	100, 364, 625
PleI	GAGTC	1 cut(s)	484
PpsI	GAGTC	1 cut(s)	484
PscI	ACATGT	1 cut(s)	331
PsiI	TTATAA	1 cut(s)	724
Psp6I	CCWGG	2 cut(s)	471, 561
PspFI	CCCAGC	1 cut(s)	446
PspGI	CCWGG	2 cut(s)	471, 561
PspPI	GGNCC	2 cut(s)	164, 559
PsuI	RGATCY	1 cut(s)	322
RruI	TCGCGA	1 cut(s)	537
RsaI	GTAC	3 cut(s)	35, 336, 616
RsaNI	GTAC	3 cut(s)	34, 335, 615
RseI	CAYNNNNRTG	3 cut(s)	93, 642, 644
SaqAI	TTAA	2 cut(s)	144, 425
SatI	GCNGC	3 cut(s)	99, 363, 624
Sau3AI	GATC	1 cut(s)	322
Sau96I	GGNCC	2 cut(s)	164, 559
SchI	GAGTC	1 cut(s)	485
ScrFI	CCNGG	2 cut(s)	473, 563
SfaNI	GCATC	1 cut(s)	409
SfcI	CTRYAG	1 cut(s)	429
SinI	GGWCC	1 cut(s)	164
SmiMI	CAYNNNNRTG	3 cut(s)	93, 642, 644
SmlI	CTYRAG	2 cut(s)	143, 544
SmoI	CTYRAG	2 cut(s)	143, 544
Sse9I	AATT	8 cut(s)	159, 183, 293, 482, 570, 629, 653, 670
SsiI	CCGC	5 cut(s)	70, 98, 621, 624, 702
SspMI	CTAG	1 cut(s)	443
StyD4I	CCNGG	2 cut(s)	471, 561
TaaI	ACNGT	1 cut(s)	682
TaiI	ACGT	1 cut(s)	620
TaqI	TCGA	1 cut(s)	510
TasI	AATT	8 cut(s)	159, 183, 293, 482, 570, 629, 653, 670
TauI	GCSGC	2 cut(s)	101, 626
TfiI	GAWTC	3 cut(s)	191, 455, 532
Tru1I	TTAA	2 cut(s)	144, 425
Tru9I	TTAA	2 cut(s)	144, 425
TseFI	GTSAC	3 cut(s)	216, 327, 578
TseI	GCWGC	1 cut(s)	362
Tsp45I	GTSAC	3 cut(s)	216, 327, 578
TspDTI	ATGAA	4 cut(s)	267, 372, 393, 539
TspGWI	ACGGA	2 cut(s)	193, 315
Vha464I	CTTAAG	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	1 cut(s)	653
XceI	RCATGY	1 cut(s)	335
XspI	CTAG	1 cut(s)	443
Zsp2I	ATGCAT	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.