Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010186

Physical Location & Seq

Genomic Coordinates Reverse (-)

9695055 .. 9698055

Gene Structure 3001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g15510.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCGACGGCGACAGCGCCGGCGAACAAGATCGAGAGGGCCCATCTGATGTACAGGGAAGGGAAGTACGAGGAGGCTCTGGGATTCTACACGGAGGCCCTGTCCATGGCCAAGACCAAACCCCAGAAGATTGCTCTCCACAGCAATAGAGCCGCCTGCTTCCTCAAGCTTCACCTTTTCAAAAAGGCTGCAGAGGAATGTACCTCAGTCCTTGAGCTTGATTACAATCATACCGGAGCATTGATGTTGCGGGCACAGACCCTGGTGACACTAAAGGAGTACCGCTCAGCAATCTTTGATGTTAATAGGCTAATAGAGTTAAACCCATCATCCGAAGTGTATCAAAACCTTGAAGCCCGTTTAAGGACGCAAGTGTCACTGGCTCCAATACCCGAGTCCGAAGCAGAGCTAGAAGAAGAGGAAGAAGAAGAGGGTGAAGCTGAGCCAAATAGATATGGGGAGAGAGAAGAGCAATATATAAGAAAAGAAGATGTAGTACCTTCGAGGGAAAGAAAGGATCAGCATGCTGAGGTTAATAGGACTACTGTTCCCTATGTTATCCCACTCAAGACACCAACAAAGAAGGACTCTGCTGAACAAGAAAGGGATCCAAAACAAATCTCTGTGAAGACTTCCCCGGCTGAAGTTGTTACACCAGAATATGTCAAAGAATTACCTTTAAAGGAAAAGGGATGGCAAGCAATCCCAAAACCAAAGGGACACTCTTCTTTGGACTATGGACGGTGGGACAGTGTGGAAGATGACTCTAGCGAAGATGATGACGATGATGATGAGGAAGAATCTCAACCACAGTATCGGTTCCGTGTAAAAACTGTTGGTGTTCGGCCGGTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19 TPR_8

Protein Analysis

286

Amino Acids

32.67

Weight (kDa)

5.05

Isoelectric Point (pI)

54.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56090 AT1G56090
fragaria_vesca	FvH4_3g15510
malus_domestica	MD05G1222700.v1.1 MD10G1204300.v1.1
prunus_persica	Prupe.4G137600_v2.0.a1 Prupe.4G137600_v2.0.a1
pyrus_communis	pycom05g20530 pycom10g17500
rosa_chinensis	RchiOBHm_Chr5g0026131
rosa_laevigata	RLG00000032904
rosa_multiflora	Rmu_sc0002806.1_g000005 Rmu_sc0002909.1_g000020
rosa_roxburghii	Rroxscaffold_1G00053180
rosa_rugosa	Rorug05G0090900
rosa_samantha	Rh5AG183700 Rh5BG180400 Rh5CG199500 Rh5DG182100
rosa_wichuraiana	Rw0G015710 Rw5G016630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	373
AccBSI	CCGCTC	1 cut(s)	285
AciI	CCGC	3 cut(s)	153, 250, 283
AclWI	GGATC	3 cut(s)	525, 602, 615
AcoI	YGGCCR	2 cut(s)	108, 845
AcuI	CTGAAG	1 cut(s)	663
AfaI	GTAC	5 cut(s)	53, 68, 202, 281, 498
AfiI	CCNNNNNNNGG	2 cut(s)	106, 363
AgsI	TTSAA	2 cut(s)	181, 353
AjnI	CCWGG	1 cut(s)	261
AluBI	AGCT	4 cut(s)	169, 217, 409, 440
AluI	AGCT	4 cut(s)	169, 217, 409, 440
AlwI	GGATC	3 cut(s)	525, 602, 615
AlwNI	CAGNNNCTG	1 cut(s)	262
Ama87I	CYCGRG	1 cut(s)	392
AoxI	GGCC	4 cut(s)	39, 96, 108, 845
ApaI	GGGCCC	1 cut(s)	43
ApeKI	GCWGC	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	3 cut(s)	39, 40, 97
AsuC2I	CCSGG	1 cut(s)	638
AsuHPI	GGTGA	3 cut(s)	164, 277, 446
AvaI	CYCGRG	1 cut(s)	392
BaeGI	GKGCMC	2 cut(s)	43, 256
BaeI	ACNNNNGTAYC	2 cut(s)	797, 830
BalI	TGGCCA	1 cut(s)	110
BamHI	GGATCC	1 cut(s)	607
BanII	GRGCYC	1 cut(s)	43
BarI	GAAGNNNNNNTAC	2 cut(s)	480, 512
BbsI	GAAGAC	1 cut(s)	635
BbvCI	CCTCAGC	1 cut(s)	528
BbvI	GCAGC	1 cut(s)	175
BccI	CCATC	3 cut(s)	51, 334, 687
BceAI	ACGGC	1 cut(s)	24
BciT130I	CCWGG	1 cut(s)	263
BcnI	CCSGG	1 cut(s)	638
BfaI	CTAG	2 cut(s)	410, 768
BfmI	CTRYAG	1 cut(s)	189
BfoI	RGCGCY	1 cut(s)	20
BisI	GCNGC	2 cut(s)	153, 189
BlpI	GCTNAGC	2 cut(s)	286, 441
BlsI	GCNGC	2 cut(s)	154, 190
Bme1390I	CCNGG	2 cut(s)	263, 638
BmeT110I	CYCGRG	1 cut(s)	392
BmgT120I	GGNCC	3 cut(s)	39, 40, 97
BmiI	GGNNCC	4 cut(s)	41, 384, 609, 821
BmrFI	CCNGG	2 cut(s)	263, 638
BpiI	GAAGAC	1 cut(s)	635
BplI	GAGNNNNNCTC	2 cut(s)	269, 301
Bpu10I	CCTNAGC	1 cut(s)	528
Bpu1102I	GCTNAGC	2 cut(s)	286, 441
BpuEI	CTTGAG	3 cut(s)	149, 233, 551
BpuMI	CCSGG	1 cut(s)	638
BsaBI	GATNNNNATC	1 cut(s)	225
BsaJI	CCNNGG	3 cut(s)	105, 261, 636
BsaWI	WCCGGW	1 cut(s)	233
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 363
Bse118I	RCCGGY	2 cut(s)	19, 847
Bse1I	ACTGG	1 cut(s)	384
Bse8I	GATNNNNATC	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	3 cut(s)	105, 261, 636
BseGI	GGATG	2 cut(s)	329, 698
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	2 cut(s)	106, 363
BseMII	CTCAG	4 cut(s)	219, 300, 432, 519
BseNI	ACTGG	1 cut(s)	384
BseRI	GAGGAG	1 cut(s)	86
BseSI	GKGCMC	2 cut(s)	43, 256
BseX3I	CGGCCG	1 cut(s)	845
BseXI	GCAGC	1 cut(s)	175
Bsh1285I	CGRYCG	1 cut(s)	848
BshFI	GGCC	4 cut(s)	41, 98, 110, 847
BsiEI	CGRYCG	1 cut(s)	848
BsiHKCI	CYCGRG	1 cut(s)	392
BsiSI	CCGG	4 cut(s)	20, 234, 638, 848
BslFI	GGGAC	2 cut(s)	732, 761
BslI	CCNNNNNNNGG	2 cut(s)	106, 363
BsmFI	GGGAC	2 cut(s)	732, 761
BsnI	GGCC	4 cut(s)	41, 98, 110, 847
BsoBI	CYCGRG	1 cut(s)	392
Bsp120I	GGGCCC	1 cut(s)	39
Bsp1286I	GDGCHC	2 cut(s)	43, 256
Bsp1407I	TGTACA	1 cut(s)	51
Bsp143I	GATC	3 cut(s)	30, 517, 607
Bsp1720I	GCTNAGC	2 cut(s)	286, 441
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	3 cut(s)	153, 250, 283
BspANI	GGCC	4 cut(s)	41, 98, 110, 847
BspCNI	CTCAG	4 cut(s)	218, 299, 433, 520
BspLI	GGNNCC	4 cut(s)	41, 384, 609, 821
BspMAI	CTGCAG	1 cut(s)	193
BspPI	GGATC	3 cut(s)	525, 602, 615
BspQI	GCTCTTC	1 cut(s)	462
BsrBI	CCGCTC	1 cut(s)	285
BsrFI	RCCGGY	2 cut(s)	19, 847
BsrGI	TGTACA	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	384
BssAI	RCCGGY	2 cut(s)	19, 847
BssECI	CCNNGG	3 cut(s)	105, 261, 636
BssMI	GATC	3 cut(s)	30, 517, 607
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	5 cut(s)	547, 744, 752, 813, 835
Bst6I	CTCTTC	4 cut(s)	411, 423, 462, 730
BstAUI	TGTACA	1 cut(s)	51
BstC8I	GCNNGC	5 cut(s)	21, 157, 252, 525, 699
BstDEI	CTNAG	4 cut(s)	205, 286, 441, 528
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	2 cut(s)	329, 698
BstH2I	RGCGCY	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	3 cut(s)	33, 520, 610
BstMBI	GATC	3 cut(s)	30, 517, 607
BstMCI	CGRYCG	1 cut(s)	848
BstNI	CCWGG	1 cut(s)	263
BstNSI	RCATGY	1 cut(s)	527
BstSCI	CCNGG	2 cut(s)	261, 636
BstSFI	CTRYAG	1 cut(s)	189
BstSLI	GKGCMC	2 cut(s)	43, 256
BstV1I	GCAGC	1 cut(s)	175
BstV2I	GAAGAC	1 cut(s)	635
BstX2I	RGATCY	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	607
BstZI	CGGCCG	1 cut(s)	845
BsuRI	GGCC	4 cut(s)	41, 98, 110, 847
BtgI	CCRYGG	1 cut(s)	105
BtsCI	GGATG	2 cut(s)	329, 698
BtsIMutI	CAGTG	2 cut(s)	377, 757
Cac8I	GCNNGC	5 cut(s)	21, 157, 252, 525, 699
CaiI	CAGNNNCTG	1 cut(s)	262
CfoI	GCGC	1 cut(s)	19
Cfr10I	RCCGGY	2 cut(s)	19, 847
Cfr13I	GGNCC	3 cut(s)	39, 40, 97
CseI	GACGC	1 cut(s)	376
Csp6I	GTAC	5 cut(s)	52, 67, 201, 280, 497
CviAII	CATG	2 cut(s)	106, 524
CviQI	GTAC	5 cut(s)	52, 67, 201, 280, 497
DdeI	CTNAG	4 cut(s)	205, 286, 441, 528
DpnI	GATC	3 cut(s)	32, 519, 609
DpnII	GATC	3 cut(s)	30, 517, 607
DraI	TTTAAA	1 cut(s)	681
DrdI	GACNNNNNNGTC	1 cut(s)	373
DseDI	GACNNNNNNGTC	1 cut(s)	373
EaeI	YGGCCR	2 cut(s)	108, 845
EagI	CGGCCG	1 cut(s)	845
Eam1104I	CTCTTC	4 cut(s)	411, 423, 462, 730
EarI	CTCTTC	4 cut(s)	411, 423, 462, 730
EclXI	CGGCCG	1 cut(s)	845
Eco130I	CCWWGG	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	43
Eco52I	CGGCCG	1 cut(s)	845
Eco57I	CTGAAG	1 cut(s)	663
Eco88I	CYCGRG	1 cut(s)	392
EcoO109I	RGGNCCY	2 cut(s)	39, 97
EcoRII	CCWGG	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	105
EcoT38I	GRGCYC	1 cut(s)	43
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	2 cut(s)	109, 527
FaiI	YATR	9 cut(s)	107, 231, 456, 477, 479, 525, 555, 663, 738
FaqI	GGGAC	2 cut(s)	732, 761
FatI	CATG	2 cut(s)	105, 523
FauI	CCCGC	1 cut(s)	243
Fnu4HI	GCNGC	2 cut(s)	153, 189
FokI	GGATG	2 cut(s)	316, 705
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	2 cut(s)	153, 189
FspBI	CTAG	2 cut(s)	410, 768
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	2 cut(s)	153, 189
HaeII	RGCGCY	1 cut(s)	20
HaeIII	GGCC	4 cut(s)	41, 98, 110, 847
HapII	CCGG	4 cut(s)	20, 234, 638, 848
HgaI	GACGC	1 cut(s)	376
HhaI	GCGC	1 cut(s)	19
Hin1II	CATG	2 cut(s)	109, 527
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	5 cut(s)	84, 395, 587, 764, 800
HpaII	CCGG	4 cut(s)	20, 234, 638, 848
HphI	GGTGA	3 cut(s)	164, 277, 446
Hpy188I	TCNGA	3 cut(s)	48, 334, 400
Hpy188III	TCNNGA	2 cut(s)	34, 568
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	53, 510, 577
HpyCH4III	ACNGT	5 cut(s)	547, 744, 752, 813, 835
HpyCH4V	TGCA	1 cut(s)	191
HpyF3I	CTNAG	4 cut(s)	205, 286, 441, 528
Hsp92II	CATG	2 cut(s)	109, 527
HspAI	GCGC	1 cut(s)	17
KroI	GCCGGC	1 cut(s)	19
KroNI	GCCGGC	1 cut(s)	21
Kzo9I	GATC	3 cut(s)	30, 517, 607
LguI	GCTCTTC	1 cut(s)	462
LmnI	GCTCC	2 cut(s)	236, 388
Lsp1109I	GCAGC	1 cut(s)	175
MaeI	CTAG	2 cut(s)	410, 768
MaeIII	GTNAC	3 cut(s)	265, 375, 649
MalI	GATC	3 cut(s)	32, 519, 609
MbiI	CCGCTC	1 cut(s)	285
MboI	GATC	3 cut(s)	30, 517, 607
MflI	RGATCY	1 cut(s)	607
MhlI	GDGCHC	2 cut(s)	43, 256
MlsI	TGGCCA	1 cut(s)	110
MluCI	AATT	1 cut(s)	671
MluNI	TGGCCA	1 cut(s)	110
MlyI	GAGTC	3 cut(s)	404, 581, 758
Mox20I	TGGCCA	1 cut(s)	110
MreI	CGCCGGCG	1 cut(s)	19
MroNI	GCCGGC	1 cut(s)	19
MscI	TGGCCA	1 cut(s)	110
MseI	TTAA	5 cut(s)	303, 320, 362, 534, 680
Msp20I	TGGCCA	1 cut(s)	110
MspI	CCGG	4 cut(s)	20, 234, 638, 848
MspR9I	CCNGG	2 cut(s)	263, 638
MvaI	CCWGG	1 cut(s)	263
NaeI	GCCGGC	1 cut(s)	21
NciI	CCSGG	1 cut(s)	638
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	3 cut(s)	30, 517, 607
NgoMIV	GCCGGC	1 cut(s)	19
NlaIII	CATG	2 cut(s)	109, 527
NlaIV	GGNNCC	4 cut(s)	41, 384, 609, 821
NmuCI	GTSAC	2 cut(s)	265, 375
NspI	RCATGY	1 cut(s)	527
PaeI	GCATGC	1 cut(s)	527
PciSI	GCTCTTC	1 cut(s)	462
PdiI	GCCGGC	1 cut(s)	21
PfeI	GAWTC	2 cut(s)	84, 800
PkrI	GCNGC	2 cut(s)	154, 190
PleI	GAGTC	3 cut(s)	403, 581, 758
PpsI	GAGTC	3 cut(s)	403, 581, 758
Psp6I	CCWGG	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	4 cut(s)	41, 384, 609, 821
PspOMI	GGGCCC	1 cut(s)	39
PspPI	GGNCC	3 cut(s)	39, 40, 97
PstI	CTGCAG	1 cut(s)	193
PstNI	CAGNNNCTG	1 cut(s)	262
PsuI	RGATCY	1 cut(s)	607
RsaI	GTAC	5 cut(s)	53, 68, 202, 281, 498
RsaNI	GTAC	5 cut(s)	52, 67, 201, 280, 497
SapI	GCTCTTC	1 cut(s)	462
SaqAI	TTAA	5 cut(s)	303, 320, 362, 534, 680
SatI	GCNGC	2 cut(s)	153, 189
Sau3AI	GATC	3 cut(s)	30, 517, 607
Sau96I	GGNCC	3 cut(s)	39, 40, 97
SchI	GAGTC	3 cut(s)	404, 581, 758
ScrFI	CCNGG	2 cut(s)	263, 638
SduI	GDGCHC	2 cut(s)	43, 256
SfcI	CTRYAG	1 cut(s)	189
SgrAI	CRCCGGYG	1 cut(s)	19
SmlI	CTYRAG	3 cut(s)	164, 212, 566
SmoI	CTYRAG	3 cut(s)	164, 212, 566
SphI	GCATGC	1 cut(s)	527
Sse9I	AATT	1 cut(s)	671
SsiI	CCGC	3 cut(s)	153, 250, 283
SspMI	CTAG	2 cut(s)	410, 768
StyD4I	CCNGG	2 cut(s)	261, 636
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	5 cut(s)	547, 744, 752, 813, 835
TaqI	TCGA	2 cut(s)	33, 503
TasI	AATT	1 cut(s)	671
TatI	WGTACW	1 cut(s)	51
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	2 cut(s)	84, 800
Tru1I	TTAA	5 cut(s)	303, 320, 362, 534, 680
Tru9I	TTAA	5 cut(s)	303, 320, 362, 534, 680
TscAI	CASTG	2 cut(s)	384, 757
TseFI	GTSAC	2 cut(s)	265, 375
TseI	GCWGC	1 cut(s)	188
Tsp45I	GTSAC	2 cut(s)	265, 375
TspGWI	ACGGA	2 cut(s)	107, 812
TspRI	CASTG	2 cut(s)	384, 757
XceI	RCATGY	1 cut(s)	527
XspI	CTAG	2 cut(s)	410, 768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.