Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007665

Physical Location & Seq

Genomic Coordinates Forward (+)

21030787 .. 21032234

Gene Structure 1448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G56200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCTATGGCGGCGTCTATTATCCAATCTTCTCCGCTCTCCTTCAATAGCAACAACGCAAAGCCACGGATTCATAGTTCAGGATCGCTCGGCGGAATCAAAAGCCAAAATAGAGTCTCTCCATTGAGTGCGGTTGGATTAAGCTCAGGCCTTGGAAGTAGAAGGAAATCTCTTTTGATATGTCACTCAGCCATTAACGCGAAATGCAGTGAAGGACAAACACAGACCGTTACTCGGGAGTCACCGACTATAACACAGGCTCCTGTACACTCTAAGGAGAAATCACCAAGCCTAGACGATGGAGGAGACGGGTTCCCACCGCGAGATGATGGAGATGGTGGTGGAGGAGGAGGGGGTGGAGGCAACTGGTCGGGTGGGTTCTTCTTCTTTGGTTTTCTGGCCTTCTTGGGTCTATTGAAGGATAAAGAGGGCGAGGAAGATTACCGAGGGAGCAGAAGGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

15.99

Weight (kDa)

9.34

Isoelectric Point (pI)

59.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30475 AT1G30475 AT1G30475 AT1G30475 AT1G56200 AT1G56200
fragaria_vesca	FvH4_3g42270 FvH4_3g42270 FvH4_3g42270 FvH4_3g42270 FvH4_3g42270
malus_domestica	MD03G1035300.v1.1 MD11G1037000.v1.1
prunus_persica	Prupe.6G028300_v2.0.a1 Prupe.6G028300_v2.0.a1
pyrus_communis	pycom03g02750 pycom11g03070
rosa_chinensis	RchiOBHm_Chr5g0075591
rosa_laevigata	RLG00000036583
rosa_multiflora	Rmu_sc0001811.1_g000004
rosa_roxburghii	Rroxscaffold_1G00005970
rosa_rugosa	Rorug05G0441500
rosa_samantha	Rh5BG518900
rosa_wichuraiana	Rw5G046180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	37
AccII	CGCG	2 cut(s)	200, 322
AciI	CCGC	5 cut(s)	11, 35, 93, 131, 320
AclWI	GGATC	1 cut(s)	91
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	1 cut(s)	267
AfiI	CCNNNNNNNGG	1 cut(s)	234
AgsI	TTSAA	2 cut(s)	46, 418
AloI	GAACNNNNNNTCC	2 cut(s)	61, 93
AluBI	AGCT	1 cut(s)	144
AluI	AGCT	1 cut(s)	144
Alw26I	GTCTC	2 cut(s)	121, 300
AlwI	GGATC	1 cut(s)	91
Ama87I	CYCGRG	1 cut(s)	234
AoxI	GGCC	2 cut(s)	148, 399
AsuHPI	GGTGA	2 cut(s)	234, 276
AvaI	CYCGRG	1 cut(s)	234
BccI	CCATC	3 cut(s)	293, 323, 329
BcoDI	GTCTC	2 cut(s)	121, 300
BfaI	CTAG	1 cut(s)	293
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
BmeT110I	CYCGRG	1 cut(s)	234
BmiI	GGNNCC	2 cut(s)	261, 314
Bpu10I	CCTNAGC	1 cut(s)	145
BsaHI	GRCGYC	1 cut(s)	14
BsaJI	CCNNGG	3 cut(s)	65, 151, 445
BsaXI	ACNNNNNCTCC	2 cut(s)	244, 274
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
Bse1I	ACTGG	1 cut(s)	371
BseDI	CCNNGG	3 cut(s)	65, 151, 445
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseMII	CTCAG	2 cut(s)	159, 201
BseNI	ACTGG	1 cut(s)	371
BseRI	GAGGAG	3 cut(s)	318, 360, 363
Bsh1236I	CGCG	2 cut(s)	200, 322
BshFI	GGCC	2 cut(s)	150, 401
BsiHKCI	CYCGRG	1 cut(s)	234
BslI	CCNNNNNNNGG	1 cut(s)	234
BsmAI	GTCTC	2 cut(s)	121, 300
BsmBI	CGTCTC	1 cut(s)	300
BsnI	GGCC	2 cut(s)	150, 401
BsoBI	CYCGRG	1 cut(s)	234
Bsp1407I	TGTACA	1 cut(s)	265
Bsp143I	GATC	1 cut(s)	83
BspACI	CCGC	5 cut(s)	11, 35, 93, 131, 320
BspANI	GGCC	2 cut(s)	150, 401
BspCNI	CTCAG	2 cut(s)	158, 200
BspFNI	CGCG	2 cut(s)	200, 322
BspLI	GGNNCC	2 cut(s)	261, 314
BspPI	GGATC	1 cut(s)	91
BsrBI	CCGCTC	1 cut(s)	37
BsrGI	TGTACA	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	371
BssECI	CCNNGG	3 cut(s)	65, 151, 445
BssMI	GATC	1 cut(s)	83
BssNI	GRCGYC	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	151
Bst4CI	ACNGT	1 cut(s)	229
BstACI	GRCGYC	1 cut(s)	14
BstAUI	TGTACA	1 cut(s)	265
BstDEI	CTNAG	3 cut(s)	145, 187, 273
BstDSI	CCRYGG	1 cut(s)	65
BstFNI	CGCG	2 cut(s)	200, 322
BstKTI	GATC	1 cut(s)	86
BstMAI	GTCTC	2 cut(s)	121, 300
BstMBI	GATC	1 cut(s)	83
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 197
BstUI	CGCG	2 cut(s)	200, 322
BsuRI	GGCC	2 cut(s)	150, 401
BtgI	CCRYGG	1 cut(s)	65
BtsI	GCAGTG	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	214
CseI	GACGC	1 cut(s)	3
Csp6I	GTAC	1 cut(s)	266
CviJI	RGCY	9 cut(s)	5, 64, 105, 144, 150, 191, 260, 291, 401
CviKI_1	RGCY	9 cut(s)	5, 64, 105, 144, 150, 191, 260, 291, 401
CviQI	GTAC	1 cut(s)	266
DdeI	CTNAG	3 cut(s)	145, 187, 273
DpnI	GATC	1 cut(s)	85
DpnII	GATC	1 cut(s)	83
EciI	GGCGGA	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	151
Eco147I	AGGCCT	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	151
Esp3I	CGTCTC	1 cut(s)	300
FaiI	YATR	4 cut(s)	8, 75, 181, 251
Fnu4HI	GCNGC	1 cut(s)	12
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	1 cut(s)	293
GluI	GCNGC	1 cut(s)	12
HaeIII	GGCC	2 cut(s)	150, 401
HgaI	GACGC	1 cut(s)	3
Hin1I	GRCGYC	1 cut(s)	14
HinfI	GANTC	4 cut(s)	70, 96, 114, 239
HphI	GGTGA	2 cut(s)	234, 276
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188III	TCNNGA	2 cut(s)	81, 236
Hpy8I	GTNNAC	1 cut(s)	268
HpyAV	CCTTC	6 cut(s)	52, 156, 206, 412, 412, 450
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	1 cut(s)	207
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 197
HpyF3I	CTNAG	3 cut(s)	145, 187, 273
Hsp92I	GRCGYC	1 cut(s)	14
Kzo9I	GATC	1 cut(s)	83
LmnI	GCTCC	2 cut(s)	265, 450
LpnPI	CCDG	6 cut(s)	66, 132, 242, 276, 352, 383
MaeI	CTAG	1 cut(s)	293
MaeIII	GTNAC	3 cut(s)	182, 229, 240
MalI	GATC	1 cut(s)	85
MbiI	CCGCTC	1 cut(s)	37
MboI	GATC	1 cut(s)	83
MboII	GAAGA	4 cut(s)	21, 373, 376, 449
MlyI	GAGTC	2 cut(s)	123, 248
MmeI	TCCRAC	1 cut(s)	115
MnlI	CCTC	8 cut(s)	296, 338, 341, 344, 353, 421, 427, 440
MseI	TTAA	2 cut(s)	140, 195
MvnI	CGCG	2 cut(s)	200, 322
MwoI	GCNNNNNNNGC	2 cut(s)	11, 197
NdeII	GATC	1 cut(s)	83
NlaIV	GGNNCC	2 cut(s)	261, 314
NmeAIII	GCCGAG	1 cut(s)	69
NmuCI	GTSAC	2 cut(s)	182, 240
PceI	AGGCCT	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	70, 96
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	2 cut(s)	122, 247
PpsI	GAGTC	2 cut(s)	122, 247
PspN4I	GGNNCC	2 cut(s)	261, 314
RsaI	GTAC	1 cut(s)	267
RsaNI	GTAC	1 cut(s)	266
SaqAI	TTAA	2 cut(s)	140, 195
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	1 cut(s)	83
SchI	GAGTC	2 cut(s)	123, 248
SetI	ASST	1 cut(s)	146
SseBI	AGGCCT	1 cut(s)	150
SsiI	CCGC	5 cut(s)	11, 35, 93, 131, 320
SspMI	CTAG	1 cut(s)	293
StuI	AGGCCT	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	151
TaaI	ACNGT	1 cut(s)	229
TatI	WGTACW	1 cut(s)	265
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	2 cut(s)	70, 96
Tru1I	TTAA	2 cut(s)	140, 195
Tru9I	TTAA	2 cut(s)	140, 195
TscAI	CASTG	1 cut(s)	214
TseFI	GTSAC	2 cut(s)	182, 240
Tsp45I	GTSAC	2 cut(s)	182, 240
TspDTI	ATGAA	1 cut(s)	62
TspGWI	ACGGA	1 cut(s)	82
TspRI	CASTG	1 cut(s)	214
XspI	CTAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.