Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007665

Physical Location & Seq

Genomic Coordinates Forward (+)

2207093 .. 2209762

Gene Structure 2670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G028300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGCCAATGTTGACTGCTGCAAGTACAATTGTTAGCTCGCCTCTATTGCCAGCAGTAGGTCAATGCCCCGGACGAGTGAAGCTTTCTAGCTGTGGGCCAAAAAGGGTTTGTGGTGATGGAAGAATGGTACATTTTAAGATCAAACCAGTGGGGCTTGGTGCACAGTTATCACTTCTTGAGAGAAGAAAACCAGTCATTGGTTCCCGTCGGTCTGCTTCTGTAATATGTGCTTCTGCTTCGAATGCCAGATGCGGTGCAGAGCAAACCCAGACTGTCACCCGTGAGGCTCCAACAATTACACATCTTCCTGGCAAGGAAAAGTCCCCACTGCTTGATGATGGTGGAAGTGGATTCCCTCCTGGTGATGATGGTGATGGTGGTGGCGGTGGAGGTGGTGGTGGGGGCAACTGGTCTGGAGGATTTGCCTTTTTTGGCTTTCTTCTTTTCCTGAGCTTTTTAAAGGATAAAGAAAGTGAGGGTGGTTATCGGGAAAATAGGAGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

17.39

Weight (kDa)

9.62

Isoelectric Point (pI)

51.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30475 AT1G30475 AT1G30475 AT1G30475 AT1G56200 AT1G56200
fragaria_vesca	FvH4_3g42270 FvH4_3g42270 FvH4_3g42270 FvH4_3g42270 FvH4_3g42270
malus_domestica	MD03G1035300.v1.1 MD11G1037000.v1.1
prunus_persica	Prupe.6G028300_v2.0.a1 Prupe.6G028300_v2.0.a1
pyrus_communis	pycom03g02750 pycom11g03070
rosa_chinensis	RchiOBHm_Chr5g0075591
rosa_laevigata	RLG00000036583
rosa_multiflora	Rmu_sc0001811.1_g000004
rosa_roxburghii	Rroxscaffold_1G00005970
rosa_rugosa	Rorug05G0441500
rosa_samantha	Rh5BG518900
rosa_wichuraiana	Rw5G046180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	197
AciI	CCGC	2 cut(s)	252, 384
AfaI	GTAC	2 cut(s)	25, 129
AfiI	CCNNNNNNNGG	2 cut(s)	56, 197
AjnI	CCWGG	2 cut(s)	307, 358
AluBI	AGCT	4 cut(s)	36, 82, 90, 453
AluI	AGCT	4 cut(s)	36, 82, 90, 453
Alw21I	GWGCWC	1 cut(s)	163
Alw44I	GTGCAC	1 cut(s)	159
AoxI	GGCC	1 cut(s)	95
ApaLI	GTGCAC	1 cut(s)	159
ApeKI	GCWGC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	95
AsuC2I	CCSGG	1 cut(s)	69
AsuHPI	GGTGA	4 cut(s)	125, 268, 374, 383
AsuII	TTCGAA	1 cut(s)	239
BaeGI	GKGCMC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	4 cut(s)	110, 332, 362, 368
BciT130I	CCWGG	2 cut(s)	309, 360
BcnI	CCSGG	1 cut(s)	69
BfaI	CTAG	1 cut(s)	87
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
Bme1390I	CCNGG	3 cut(s)	69, 309, 360
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	2 cut(s)	202, 288
BmrFI	CCNGG	3 cut(s)	69, 309, 360
BmsI	GCATC	1 cut(s)	239
BpmI	CTGGAG	1 cut(s)	435
Bpu10I	CCTNAGC	1 cut(s)	449
Bpu14I	TTCGAA	1 cut(s)	239
BpuEI	CTTGAG	1 cut(s)	197
BpuMI	CCSGG	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 197
Bse1I	ACTGG	3 cut(s)	146, 191, 413
BseBI	CCWGG	2 cut(s)	309, 360
BseDI	CCNNGG	1 cut(s)	67
BseLI	CCNNNNNNNGG	2 cut(s)	56, 197
BseMII	CTCAG	1 cut(s)	440
BseNI	ACTGG	3 cut(s)	146, 191, 413
BseSI	GKGCMC	1 cut(s)	163
BseXI	GCAGC	1 cut(s)	4
BsgI	GTGCAG	1 cut(s)	276
BshFI	GGCC	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	2 cut(s)	56, 197
BsmFI	GGGAC	1 cut(s)	307
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	97
Bsp119I	TTCGAA	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	138
BspACI	CCGC	2 cut(s)	252, 384
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	1 cut(s)	441
BspLI	GGNNCC	2 cut(s)	202, 288
BspT104I	TTCGAA	1 cut(s)	239
BsrI	ACTGG	3 cut(s)	146, 191, 413
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	1 cut(s)	138
Bst2UI	CCWGG	2 cut(s)	309, 360
Bst4CI	ACNGT	2 cut(s)	165, 274
BstBI	TTCGAA	1 cut(s)	239
BstC8I	GCNNGC	2 cut(s)	38, 51
BstDEI	CTNAG	1 cut(s)	449
BstKTI	GATC	1 cut(s)	141
BstMBI	GATC	1 cut(s)	138
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 242
BstNI	CCWGG	2 cut(s)	309, 360
BstSCI	CCNGG	3 cut(s)	67, 307, 358
BstSLI	GKGCMC	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	97
BtsI	GCAGTG	1 cut(s)	326
BtsIMutI	CAGTG	2 cut(s)	153, 326
Cac8I	GCNNGC	2 cut(s)	38, 51
Cfr13I	GGNCC	1 cut(s)	95
Csp6I	GTAC	2 cut(s)	24, 128
CviJI	RGCY	8 cut(s)	36, 82, 90, 97, 154, 287, 435, 453
CviKI_1	RGCY	8 cut(s)	36, 82, 90, 97, 154, 287, 435, 453
CviQI	GTAC	2 cut(s)	24, 128
DdeI	CTNAG	1 cut(s)	449
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
DraI	TTTAAA	1 cut(s)	459
EcoRII	CCWGG	2 cut(s)	307, 358
FaiI	YATR	1 cut(s)	226
FaqI	GGGAC	1 cut(s)	307
Fnu4HI	GCNGC	1 cut(s)	18
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	1 cut(s)	87
GluI	GCNGC	1 cut(s)	18
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	1 cut(s)	97
HapII	CCGG	1 cut(s)	69
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	1 cut(s)	351
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	4 cut(s)	125, 268, 374, 383
Hpy166II	GTNNAC	2 cut(s)	12, 161
Hpy188III	TCNNGA	4 cut(s)	176, 414, 448, 488
Hpy8I	GTNNAC	2 cut(s)	12, 161
Hpy99I	CGWCG	1 cut(s)	210
HpyAV	CCTTC	1 cut(s)	495
HpyCH4III	ACNGT	2 cut(s)	165, 274
HpyCH4V	TGCA	3 cut(s)	20, 161, 257
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 242
HpyF3I	CTNAG	1 cut(s)	449
Kzo9I	GATC	1 cut(s)	138
LmnI	GCTCC	1 cut(s)	292
Lsp1109I	GCAGC	1 cut(s)	4
LweI	GCATC	1 cut(s)	239
MaeI	CTAG	1 cut(s)	87
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	1 cut(s)	140
MboI	GATC	1 cut(s)	138
MboII	GAAGA	4 cut(s)	132, 195, 296, 431
MfeI	CAATTG	1 cut(s)	27
MhlI	GDGCHC	1 cut(s)	163
MluCI	AATT	2 cut(s)	27, 294
MmeI	TCCRAC	1 cut(s)	314
MnlI	CCTC	6 cut(s)	51, 277, 366, 383, 410, 469
MseI	TTAA	2 cut(s)	135, 458
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	3 cut(s)	69, 309, 360
MunI	CAATTG	1 cut(s)	27
Mva1269I	GAATGC	1 cut(s)	247
MvaI	CCWGG	2 cut(s)	309, 360
MwoI	GCNNNNNNNGC	2 cut(s)	46, 242
NciI	CCSGG	1 cut(s)	69
NdeII	GATC	1 cut(s)	138
NlaIV	GGNNCC	2 cut(s)	202, 288
NmuCI	GTSAC	1 cut(s)	274
NspV	TTCGAA	1 cut(s)	239
PctI	GAATGC	1 cut(s)	247
PfeI	GAWTC	1 cut(s)	351
PflMI	CCANNNNNTGG	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	19
Psp6I	CCWGG	2 cut(s)	307, 358
PspGI	CCWGG	2 cut(s)	307, 358
PspN4I	GGNNCC	2 cut(s)	202, 288
PspPI	GGNCC	1 cut(s)	95
RsaI	GTAC	2 cut(s)	25, 129
RsaNI	GTAC	2 cut(s)	24, 128
SaqAI	TTAA	2 cut(s)	135, 458
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	1 cut(s)	138
Sau96I	GGNCC	1 cut(s)	95
ScrFI	CCNGG	3 cut(s)	69, 309, 360
SduI	GDGCHC	1 cut(s)	163
SetI	ASST	7 cut(s)	38, 61, 84, 92, 394, 455, 506
SfaNI	GCATC	1 cut(s)	239
SfuI	TTCGAA	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	2 cut(s)	27, 294
SsiI	CCGC	2 cut(s)	252, 384
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	3 cut(s)	67, 307, 358
TaaI	ACNGT	2 cut(s)	165, 274
TaqI	TCGA	1 cut(s)	239
TaqII	GACCGA	1 cut(s)	198
TasI	AATT	2 cut(s)	27, 294
TatI	WGTACW	1 cut(s)	23
TfiI	GAWTC	1 cut(s)	351
Tru1I	TTAA	2 cut(s)	135, 458
Tru9I	TTAA	2 cut(s)	135, 458
TscAI	CASTG	2 cut(s)	153, 333
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	274
TspRI	CASTG	2 cut(s)	153, 333
Van91I	CCANNNNNTGG	1 cut(s)	197
VneI	GTGCAC	1 cut(s)	159
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.