Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007665

Physical Location & Seq

Genomic Coordinates Reverse (-)

82048278 .. 82051689

Gene Structure 3412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG518900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGTGGTGCTTACTGCAGCAAGTGCAATTGCTAGCTCACCTCTACTGCCAGCAGGGTCAGTGGGTCAACAGGGCAGACGAGCTGGGGTTTATGGGTCCGGTCCAAGAAGAGTTTGTGTGGATAGAAGTGTGGTACGCTCTGACATTAGACCAGTGGGACTTGGCACACGGTTATCGCTTGAGAGAAGAAAACCATTATCACCAATCACGGGGTCTCGTCGAACGCAGTCTGCTTCTGTAATATGTGCTTCTTCTTTGAATGCCAGATGCGGTGCAGAGCAAACGCAAACTGTTACACGTGAGGCTCCAACAATTACACATCTTCCTGGCAAGGAAAAATCTCCGCTGCTTGATGATGGCGGAACAGGATTCCCTCCCAGAGATGATGGTGGTGGTGGTGGCGGTGGGGGTGGTGGTGGAGGCAACTGGTCGGGAGGCTTCGCGTTTTTTGGATTTCTTCTTTTCCTCAGCTTTCTAAAGGATAAAGAAAGTGAAGGTTCTTATCGAGAAAATAGAAAAAGGTCTTCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

177

Amino Acids

18.4

Weight (kDa)

10.26

Isoelectric Point (pI)

56.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30475 AT1G30475 AT1G30475 AT1G30475 AT1G56200 AT1G56200
fragaria_vesca	FvH4_3g42270 FvH4_3g42270 FvH4_3g42270 FvH4_3g42270 FvH4_3g42270
malus_domestica	MD03G1035300.v1.1 MD11G1037000.v1.1
prunus_persica	Prupe.6G028300_v2.0.a1 Prupe.6G028300_v2.0.a1
pyrus_communis	pycom03g02750 pycom11g03070
rosa_chinensis	RchiOBHm_Chr5g0075591
rosa_laevigata	RLG00000036583
rosa_multiflora	Rmu_sc0001811.1_g000004
rosa_roxburghii	Rroxscaffold_1G00005970
rosa_rugosa	Rorug05G0441500
rosa_samantha	Rh5BG518900
rosa_wichuraiana	Rw5G046180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	443
AciI	CCGC	4 cut(s)	270, 344, 360, 402
AcvI	CACGTG	1 cut(s)	299
AfaI	GTAC	1 cut(s)	135
AfiI	CCNNNNNNNGG	1 cut(s)	209
AflIII	ACRYGT	1 cut(s)	296
AgsI	TTSAA	1 cut(s)	259
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	3 cut(s)	36, 83, 471
AluI	AGCT	3 cut(s)	36, 83, 471
Alw26I	GTCTC	1 cut(s)	219
ApeKI	GCWGC	2 cut(s)	17, 346
AspS9I	GGNCC	2 cut(s)	96, 101
AsuHPI	GGTGA	2 cut(s)	30, 192
AsuNHI	GCTAGC	1 cut(s)	32
AvaII	GGWCC	2 cut(s)	96, 101
BbrPI	CACGTG	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	516
BbvCI	CCTCAGC	1 cut(s)	467
BbvI	GCAGC	2 cut(s)	29, 333
BccI	CCATC	2 cut(s)	350, 380
BciT130I	CCWGG	1 cut(s)	327
BcoDI	GTCTC	1 cut(s)	219
BfaI	CTAG	1 cut(s)	33
BfmI	CTRYAG	1 cut(s)	15
BisI	GCNGC	2 cut(s)	18, 347
BlsI	GCNGC	2 cut(s)	19, 348
Bme1390I	CCNGG	1 cut(s)	327
Bme18I	GGWCC	2 cut(s)	96, 101
BmgT120I	GGNCC	2 cut(s)	96, 101
BmiI	GGNNCC	2 cut(s)	97, 306
BmrFI	CCNGG	1 cut(s)	327
BmsI	GCATC	1 cut(s)	257
BmtI	GCTAGC	1 cut(s)	36
BpiI	GAAGAC	1 cut(s)	516
Bpu10I	CCTNAGC	1 cut(s)	467
BpuEI	CTTGAG	1 cut(s)	200
BsaAI	YACGTR	1 cut(s)	299
BsaI	GGTCTC	1 cut(s)	219
BsaWI	WCCGGW	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse1I	ACTGG	2 cut(s)	152, 431
BseBI	CCWGG	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseMII	CTCAG	1 cut(s)	481
BseNI	ACTGG	2 cut(s)	152, 431
BseXI	GCAGC	2 cut(s)	29, 333
BseYI	CCCAGC	1 cut(s)	83
BsgI	GTGCAG	1 cut(s)	294
Bsh1236I	CGCG	1 cut(s)	443
BsiSI	CCGG	1 cut(s)	99
BslFI	GGGAC	1 cut(s)	171
BslI	CCNNNNNNNGG	1 cut(s)	209
BsmAI	GTCTC	1 cut(s)	219
BsmFI	GGGAC	1 cut(s)	171
BsmI	GAATGC	1 cut(s)	265
Bso31I	GGTCTC	1 cut(s)	219
BspACI	CCGC	4 cut(s)	270, 344, 360, 402
BspCNI	CTCAG	1 cut(s)	480
BspFNI	CGCG	1 cut(s)	443
BspLI	GGNNCC	2 cut(s)	97, 306
BspMAI	CTGCAG	1 cut(s)	19
BspOI	GCTAGC	1 cut(s)	36
BspTNI	GGTCTC	1 cut(s)	219
BsrI	ACTGG	2 cut(s)	152, 431
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	2 cut(s)	171, 292
Bst6I	CTCTTC	1 cut(s)	103
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstBAI	YACGTR	1 cut(s)	299
BstC8I	GCNNGC	2 cut(s)	34, 51
BstDEI	CTNAG	1 cut(s)	467
BstFNI	CGCG	1 cut(s)	443
BstMAI	GTCTC	1 cut(s)	219
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNI	CCWGG	1 cut(s)	327
BstSCI	CCNGG	1 cut(s)	325
BstSFI	CTRYAG	1 cut(s)	15
BstUI	CGCG	1 cut(s)	443
BstV1I	GCAGC	2 cut(s)	29, 333
BstV2I	GAAGAC	1 cut(s)	516
BtsIMutI	CAGTG	2 cut(s)	66, 159
Cac8I	GCNNGC	2 cut(s)	34, 51
Cfr13I	GGNCC	2 cut(s)	96, 101
Csp6I	GTAC	1 cut(s)	134
CviJI	RGCY	5 cut(s)	36, 83, 305, 438, 471
CviKI_1	RGCY	5 cut(s)	36, 83, 305, 438, 471
CviQI	GTAC	1 cut(s)	134
DdeI	CTNAG	1 cut(s)	467
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
EciI	GGCGGA	1 cut(s)	375
Eco31I	GGTCTC	1 cut(s)	219
Eco47I	GGWCC	2 cut(s)	96, 101
Eco72I	CACGTG	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	325
FaiI	YATR	3 cut(s)	93, 244, 529
FaqI	GGGAC	1 cut(s)	171
Fnu4HI	GCNGC	2 cut(s)	18, 347
Fsp4HI	GCNGC	2 cut(s)	18, 347
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	2 cut(s)	18, 347
GsaI	CCCAGC	1 cut(s)	87
HapII	CCGG	1 cut(s)	99
HincII	GTYRAC	1 cut(s)	68
HindII	GTYRAC	1 cut(s)	68
HinfI	GANTC	1 cut(s)	369
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	2 cut(s)	30, 192
Hpy166II	GTNNAC	1 cut(s)	68
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	2 cut(s)	432, 506
Hpy8I	GTNNAC	1 cut(s)	68
Hpy99I	CGWCG	1 cut(s)	222
HpyAV	CCTTC	1 cut(s)	488
HpyCH4III	ACNGT	2 cut(s)	171, 292
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	3 cut(s)	17, 26, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	1 cut(s)	467
HpySE526I	ACGT	1 cut(s)	298
LmnI	GCTCC	1 cut(s)	310
Lsp1109I	GCAGC	2 cut(s)	29, 333
LweI	GCATC	1 cut(s)	257
MaeI	CTAG	1 cut(s)	33
MaeII	ACGT	1 cut(s)	298
MaeIII	GTNAC	1 cut(s)	292
MboII	GAAGA	6 cut(s)	120, 198, 243, 314, 449, 516
MfeI	CAATTG	1 cut(s)	27
MluCI	AATT	2 cut(s)	27, 312
MmeI	TCCRAC	1 cut(s)	332
MnlI	CCTC	6 cut(s)	51, 295, 384, 413, 428, 476
MspA1I	CMGCKG	1 cut(s)	346
MspI	CCGG	1 cut(s)	99
MspR9I	CCNGG	1 cut(s)	327
MunI	CAATTG	1 cut(s)	27
Mva1269I	GAATGC	1 cut(s)	265
MvaI	CCWGG	1 cut(s)	327
MvnI	CGCG	1 cut(s)	443
MwoI	GCNNNNNNNGC	1 cut(s)	23
NheI	GCTAGC	1 cut(s)	32
NlaIV	GGNNCC	2 cut(s)	97, 306
PctI	GAATGC	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	369
PkrI	GCNGC	2 cut(s)	19, 348
PmaCI	CACGTG	1 cut(s)	299
PmlI	CACGTG	1 cut(s)	299
Ppu21I	YACGTR	1 cut(s)	299
Psp6I	CCWGG	1 cut(s)	325
PspCI	CACGTG	1 cut(s)	299
PspFI	CCCAGC	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	2 cut(s)	97, 306
PspPI	GGNCC	2 cut(s)	96, 101
PstI	CTGCAG	1 cut(s)	19
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
SatI	GCNGC	2 cut(s)	18, 347
Sau96I	GGNCC	2 cut(s)	96, 101
ScrFI	CCNGG	1 cut(s)	327
SetI	ASST	7 cut(s)	38, 43, 85, 301, 473, 499, 524
SfaNI	GCATC	1 cut(s)	257
SfcI	CTRYAG	1 cut(s)	15
SinI	GGWCC	2 cut(s)	96, 101
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	2 cut(s)	27, 312
SsiI	CCGC	4 cut(s)	270, 344, 360, 402
SspMI	CTAG	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	325
TaaI	ACNGT	2 cut(s)	171, 292
TaiI	ACGT	1 cut(s)	301
TaqI	TCGA	2 cut(s)	220, 505
TasI	AATT	2 cut(s)	27, 312
TfiI	GAWTC	1 cut(s)	369
TscAI	CASTG	2 cut(s)	66, 159
TseI	GCWGC	2 cut(s)	17, 346
TspDTI	ATGAA	1 cut(s)	516
TspRI	CASTG	2 cut(s)	66, 159
VpaK11BI	GGWCC	2 cut(s)	96, 101
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.