Rorug05G0441500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0007665
Physical Location & Seq
Reverse (-)
61363805 .. 61364350
546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0441500.1

Sequence Viewer

Length: 546 bp
ATGCAAGGTTGTGGCCAACTTCCAGATGTTCAAACTTATGCCGTTTTGCTGGATGGCTTATGTAAAAACCAACAACTTGGTATGGCTATAGAATTGTTTAGAGAAATGGGAATGGGAGACAAGAAGGTGGAGCCAAATATTGTAGTTTACAATATTCTTATTGAAGGTTTGTGCATAGCTGGAAAACTTGAATCTGCTAGACACCTCTTCTTCAGTTTATCATCAAAGGGACTTCCACCTCAGGTGAGAACATATAACATAATGATTAGTGGACTTTGTGCTCGGGGCCTAATTGGTGAAGCAGAAACATTGCTTGGAGGTATGGAGGAAAAAGGCTGTTCTCCAGATGGTTGGACGTATAACACAATTATCCAAGGATTTATCAATAACAATGAGATACCAAGAGCTATCAGATTTATTCAACAAATGGTGGAGAGGGGATTATCTGCAGATTCATCAACCATGGAATTGATTGTTGATCTATTGTCTAAAGGTAAAGTAGATCCTGCTTTATTGGCATGGTTAAAAAATTCATCATCAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

19.77

Weight (kDa)

5.23

Isoelectric Point (pI)

34.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 5 - 36 8.7e-08 PPR repeat
PPR_2 PF13041 8 - 46 1.1e-06 PPR repeat family
PPR_3 PF13812 38 - 90 6.5e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 42 - 70 1.8e-08 PPR repeat
PPR_2 PF13041 45 - 93 5.7e-15 PPR repeat family
PPR_3 PF13812 73 - 128 7.7e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 76 - 109 1.3e-09 PPR repeat
PPR_2 PF13041 80 - 128 3.2e-14 PPR repeat family
PPR PF01535 84 - 113 1.2e-07 PPR repeat
PPR_1 PF12854 111 - 144 1.6e-06 PPR repeat
PPR_2 PF13041 119 - 162 3.5e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 497
AcoI YGGCCR 1 cut(s) 13
AcsI RAATTY 1 cut(s) 529
AcuI CTGAAG 1 cut(s) 196
AgsI TTSAA 4 cut(s) 32, 164, 191, 422
AjuI GAANNNNNNNTTGG 2 cut(s) 297, 329
AluBI AGCT 2 cut(s) 179, 407
AluI AGCT 2 cut(s) 179, 407
Alw21I GWGCWC 1 cut(s) 283
Alw26I GTCTC 1 cut(s) 111
AlwI GGATC 1 cut(s) 497
Ama87I CYCGRG 1 cut(s) 282
AoxI GGCC 2 cut(s) 13, 286
ApoI RAATTY 1 cut(s) 529
AspS9I GGNCC 1 cut(s) 286
AsuHPI GGTGA 2 cut(s) 256, 308
AvaI CYCGRG 1 cut(s) 282
AxyI CCTNAGG 1 cut(s) 240
BalI TGGCCA 1 cut(s) 15
Bbv12I GWGCWC 1 cut(s) 283
BccI CCATC 2 cut(s) 47, 341
BceAI ACGGC 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 1 cut(s) 198
BfmI CTRYAG 2 cut(s) 87, 447
BmeT110I CYCGRG 1 cut(s) 282
BmgT120I GGNCC 1 cut(s) 286
BmiI GGNNCC 2 cut(s) 132, 287
BpmI CTGGAG 1 cut(s) 327
BsaJI CCNNGG 2 cut(s) 373, 462
Bse21I CCTNAGG 1 cut(s) 240
Bse3DI GCAATG 1 cut(s) 308
BseDI CCNNGG 2 cut(s) 373, 462
BseGI GGATG 1 cut(s) 58
BseMI GCAATG 1 cut(s) 308
BseMII CTCAG 1 cut(s) 254
BshFI GGCC 2 cut(s) 15, 288
BsiHKAI GWGCWC 1 cut(s) 283
BsiHKCI CYCGRG 1 cut(s) 282
BslFI GGGAC 1 cut(s) 243
BsmAI GTCTC 1 cut(s) 111
BsmFI GGGAC 1 cut(s) 243
BsnI GGCC 2 cut(s) 15, 288
BsoBI CYCGRG 1 cut(s) 282
Bsp1286I GDGCHC 1 cut(s) 283
Bsp143I GATC 2 cut(s) 478, 502
Bsp19I CCATGG 1 cut(s) 462
BspANI GGCC 2 cut(s) 15, 288
BspCNI CTCAG 1 cut(s) 253
BspLI GGNNCC 2 cut(s) 132, 287
BspMAI CTGCAG 1 cut(s) 451
BspPI GGATC 1 cut(s) 497
BsrDI GCAATG 1 cut(s) 308
BssECI CCNNGG 2 cut(s) 373, 462
BssMI GATC 2 cut(s) 478, 502
BssT1I CCWWGG 2 cut(s) 373, 462
Bst6I CTCTTC 1 cut(s) 212
BstDEI CTNAG 1 cut(s) 240
BstDSI CCRYGG 1 cut(s) 462
BstF5I GGATG 1 cut(s) 58
BstKTI GATC 2 cut(s) 481, 505
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 2 cut(s) 478, 502
BstMWI GCNNNNNNNGC 1 cut(s) 515
BstSFI CTRYAG 2 cut(s) 87, 447
BstX2I RGATCY 1 cut(s) 502
BstXI CCANNNNNNTGG 2 cut(s) 77, 351
BstYI RGATCY 1 cut(s) 502
Bsu36I CCTNAGG 1 cut(s) 240
BsuRI GGCC 2 cut(s) 15, 288
BtgI CCRYGG 1 cut(s) 462
BtsCI GGATG 1 cut(s) 58
Cfr13I GGNCC 1 cut(s) 286
CviAII CATG 2 cut(s) 463, 519
CviJI RGCY 8 cut(s) 15, 57, 86, 133, 179, 288, 336, 407
CviKI_1 RGCY 8 cut(s) 15, 57, 86, 133, 179, 288, 336, 407
DdeI CTNAG 1 cut(s) 240
DpnI GATC 2 cut(s) 480, 504
DpnII GATC 2 cut(s) 478, 502
EaeI YGGCCR 1 cut(s) 13
Eam1104I CTCTTC 1 cut(s) 212
EarI CTCTTC 1 cut(s) 212
Eco130I CCWWGG 2 cut(s) 373, 462
Eco57I CTGAAG 1 cut(s) 196
Eco81I CCTNAGG 1 cut(s) 240
Eco88I CYCGRG 1 cut(s) 282
EcoO109I RGGNCCY 1 cut(s) 286
EcoT14I CCWWGG 2 cut(s) 373, 462
ErhI CCWWGG 2 cut(s) 373, 462
FaeI CATG 2 cut(s) 466, 522
FaqI GGGAC 1 cut(s) 243
FatI CATG 2 cut(s) 462, 518
FokI GGATG 1 cut(s) 65
FspBI CTAG 1 cut(s) 198
GsuI CTGGAG 1 cut(s) 327
HaeIII GGCC 2 cut(s) 15, 288
Hin1II CATG 2 cut(s) 466, 522
HinfI GANTC 2 cut(s) 191, 452
HphI GGTGA 2 cut(s) 256, 308
Hpy166II GTNNAC 2 cut(s) 148, 272
Hpy188I TCNGA 1 cut(s) 413
Hpy188III TCNNGA 2 cut(s) 23, 344
Hpy8I GTNNAC 2 cut(s) 148, 272
HpyAV CCTTC 2 cut(s) 118, 158
HpyCH4IV ACGT 1 cut(s) 356
HpyCH4V TGCA 3 cut(s) 4, 174, 449
HpyF10VI GCNNNNNNNGC 1 cut(s) 515
HpyF3I CTNAG 1 cut(s) 240
HpySE526I ACGT 1 cut(s) 356
Hsp92II CATG 2 cut(s) 466, 522
Kzo9I GATC 2 cut(s) 478, 502
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 6 cut(s) 35, 36, 165, 227, 357, 519
MaeI CTAG 1 cut(s) 198
MaeII ACGT 1 cut(s) 356
MalI GATC 2 cut(s) 480, 504
MboI GATC 2 cut(s) 478, 502
MboII GAAGA 2 cut(s) 199, 202
MflI RGATCY 1 cut(s) 502
MhlI GDGCHC 1 cut(s) 283
MlsI TGGCCA 1 cut(s) 15
MluCI AATT 5 cut(s) 92, 291, 366, 467, 529
MluNI TGGCCA 1 cut(s) 15
MmeI TCCRAC 1 cut(s) 332
MnlI CCTC 5 cut(s) 215, 249, 311, 319, 429
Mox20I TGGCCA 1 cut(s) 15
MscI TGGCCA 1 cut(s) 15
MseI TTAA 1 cut(s) 524
Msp20I TGGCCA 1 cut(s) 15
MwoI GCNNNNNNNGC 1 cut(s) 515
NcoI CCATGG 1 cut(s) 462
NdeII GATC 2 cut(s) 478, 502
NlaIII CATG 2 cut(s) 466, 522
NlaIV GGNNCC 2 cut(s) 132, 287
PfeI GAWTC 2 cut(s) 191, 452
PspN4I GGNNCC 2 cut(s) 132, 287
PspPI GGNCC 1 cut(s) 286
PstI CTGCAG 1 cut(s) 451
PsuI RGATCY 1 cut(s) 502
SaqAI TTAA 1 cut(s) 524
Sau3AI GATC 2 cut(s) 478, 502
Sau96I GGNCC 1 cut(s) 286
SduI GDGCHC 1 cut(s) 283
SfcI CTRYAG 2 cut(s) 87, 447
Sse9I AATT 5 cut(s) 92, 291, 366, 467, 529
SspI AATATT 2 cut(s) 139, 154
SspMI CTAG 1 cut(s) 198
StyI CCWWGG 2 cut(s) 373, 462
TaiI ACGT 1 cut(s) 359
TasI AATT 5 cut(s) 92, 291, 366, 467, 529
TfiI GAWTC 2 cut(s) 191, 452
Tru1I TTAA 1 cut(s) 524
Tru9I TTAA 1 cut(s) 524
TspDTI ATGAA 2 cut(s) 444, 522
XapI RAATTY 1 cut(s) 529
XspI CTAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.