MD11G1037000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0007665
Physical Location & Seq
Forward (+)
3189212 .. 3191437
2226 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1037000.v1.1.491

Sequence Viewer

Length: 501 bp
ATGTTGACTGCTGCAAGTACAATCGTTAACTCGCCTGTATTGCCAGCAGTAGGTCAATGCCGTGGACAATTTAAGCTTTCTAGCCGTGGACCGAAAAAGGTACATGTTGATGGAAAAATGGTGCATCTTAAGATGGGAGCGGTGGGGCTTGCACAGTTTCCACTCGAGAGAAGAAATCCAGTCATGGTTTCCTGTCGAACACAGTCTGCTTCTGTAATATGCGCTAGTGCTTTGAATGCCAGATGCGGTGCAGAACAAACGCAGACTGTTACACGTGAGGCTCCAACAATTACACATCTTCCTGGCAAGGAGAAGTCTCCACTGCTTGATGATGGTGGGAGTGGCTTCCCTCCTCGTGACGATGGTGATGGTGGTGGCGGTGGAGGCGGCGGTGGAGGCAACTGGTCCGGAGGCTTTGCCTTTTTCGGCTTTCTACTTTTCCTAAGCTTCTTAAAGGATAAAGAAAGTGAGGGTTCATATAGAGAAAATAGGAGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

17.47

Weight (kDa)

9.59

Isoelectric Point (pI)

44.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 140
AccIII TCCGGA 1 cut(s) 407
AciI CCGC 5 cut(s) 140, 246, 378, 387, 390
AcvI CACGTG 1 cut(s) 275
AfaI GTAC 2 cut(s) 19, 102
AfiI CCNNNNNNNGG 1 cut(s) 50
AflII CTTAAG 1 cut(s) 128
AflIII ACRYGT 2 cut(s) 103, 272
AgsI TTSAA 1 cut(s) 235
AjnI CCWGG 1 cut(s) 301
AluBI AGCT 2 cut(s) 76, 447
AluI AGCT 2 cut(s) 76, 447
Alw26I GTCTC 1 cut(s) 321
Ama87I CYCGRG 1 cut(s) 164
Aor13HI TCCGGA 1 cut(s) 407
ApeKI GCWGC 1 cut(s) 11
AspLEI GCGC 1 cut(s) 224
AspS9I GGNCC 2 cut(s) 89, 405
AsuHPI GGTGA 1 cut(s) 377
AvaI CYCGRG 1 cut(s) 164
AvaII GGWCC 2 cut(s) 89, 405
BauI CACGAG 1 cut(s) 354
BbrPI CACGTG 1 cut(s) 275
BccI CCATC 5 cut(s) 104, 127, 326, 356, 362
BceAI ACGGC 2 cut(s) 45, 69
BciT130I CCWGG 1 cut(s) 303
BcoDI GTCTC 1 cut(s) 321
BfaI CTAG 2 cut(s) 81, 225
BfrI CTTAAG 1 cut(s) 128
BisI GCNGC 2 cut(s) 12, 388
BlsI GCNGC 2 cut(s) 13, 389
Bme1390I CCNGG 1 cut(s) 303
Bme18I GGWCC 2 cut(s) 89, 405
BmeT110I CYCGRG 1 cut(s) 164
BmgT120I GGNCC 2 cut(s) 89, 405
BmiI GGNNCC 1 cut(s) 282
BmrFI CCNGG 1 cut(s) 303
BmsI GCATC 2 cut(s) 133, 233
Bpu10I CCTNAGC 1 cut(s) 443
BsaAI YACGTR 1 cut(s) 275
BsaJI CCNNGG 2 cut(s) 61, 85
BsaWI WCCGGW 1 cut(s) 407
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse1I ACTGG 2 cut(s) 179, 407
BseAI TCCGGA 1 cut(s) 407
BseBI CCWGG 1 cut(s) 303
BseDI CCNNGG 2 cut(s) 61, 85
BseLI CCNNNNNNNGG 1 cut(s) 50
BseNI ACTGG 2 cut(s) 179, 407
BseRI GAGGAG 1 cut(s) 342
BsgI GTGCAG 1 cut(s) 270
BsiHKCI CYCGRG 1 cut(s) 164
BsiSI CCGG 1 cut(s) 408
BslI CCNNNNNNNGG 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 321
BsmI GAATGC 1 cut(s) 241
BsoBI CYCGRG 1 cut(s) 164
Bsp13I TCCGGA 1 cut(s) 407
BspACI CCGC 5 cut(s) 140, 246, 378, 387, 390
BspEI TCCGGA 1 cut(s) 407
BspLI GGNNCC 1 cut(s) 282
BspTI CTTAAG 1 cut(s) 128
BsrBI CCGCTC 1 cut(s) 140
BsrI ACTGG 2 cut(s) 179, 407
BssECI CCNNGG 2 cut(s) 61, 85
BssSI CACGAG 1 cut(s) 354
Bst2BI CACGAG 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 303
Bst4CI ACNGT 3 cut(s) 156, 204, 268
BstAFI CTTAAG 1 cut(s) 128
BstBAI YACGTR 1 cut(s) 275
BstC8I GCNNGC 2 cut(s) 45, 150
BstDEI CTNAG 1 cut(s) 443
BstDSI CCRYGG 2 cut(s) 61, 85
BstHHI GCGC 1 cut(s) 224
BstMAI GTCTC 1 cut(s) 321
BstMWI GCNNNNNNNGC 4 cut(s) 40, 236, 384, 396
BstNI CCWGG 1 cut(s) 303
BstNSI RCATGY 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 301
BtgI CCRYGG 2 cut(s) 61, 85
BtsI GCAGTG 1 cut(s) 320
BtsIMutI CAGTG 1 cut(s) 320
Cac8I GCNNGC 2 cut(s) 45, 150
CfoI GCGC 1 cut(s) 224
Cfr13I GGNCC 2 cut(s) 89, 405
Csp6I GTAC 2 cut(s) 18, 101
CviAII CATG 2 cut(s) 104, 184
CviJI RGCY 8 cut(s) 76, 84, 148, 281, 345, 414, 429, 447
CviKI_1 RGCY 8 cut(s) 76, 84, 148, 281, 345, 414, 429, 447
CviQI GTAC 2 cut(s) 18, 101
DdeI CTNAG 1 cut(s) 443
Eco47I GGWCC 2 cut(s) 89, 405
Eco72I CACGTG 1 cut(s) 275
Eco88I CYCGRG 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 301
FaeI CATG 2 cut(s) 107, 187
FaiI YATR 5 cut(s) 105, 185, 220, 478, 480
FatI CATG 2 cut(s) 103, 183
Fnu4HI GCNGC 2 cut(s) 12, 388
Fsp4HI GCNGC 2 cut(s) 12, 388
FspBI CTAG 2 cut(s) 81, 225
GlaI GCGC 1 cut(s) 223
GluI GCNGC 2 cut(s) 12, 388
HapII CCGG 1 cut(s) 408
HhaI GCGC 1 cut(s) 224
Hin1II CATG 2 cut(s) 107, 187
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HincII GTYRAC 2 cut(s) 6, 28
HindII GTYRAC 2 cut(s) 6, 28
HindIII AAGCTT 2 cut(s) 74, 445
HpaI GTTAAC 1 cut(s) 28
HpaII CCGG 1 cut(s) 408
HphI GGTGA 1 cut(s) 377
Hpy166II GTNNAC 4 cut(s) 6, 28, 65, 89
Hpy188III TCNNGA 3 cut(s) 166, 356, 408
Hpy8I GTNNAC 4 cut(s) 6, 28, 65, 89
HpyAV CCTTC 1 cut(s) 489
HpyCH4III ACNGT 3 cut(s) 156, 204, 268
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 4 cut(s) 14, 124, 152, 251
HpyF10VI GCNNNNNNNGC 4 cut(s) 40, 236, 384, 396
HpyF3I CTNAG 1 cut(s) 443
HpySE526I ACGT 1 cut(s) 274
Hsp92II CATG 2 cut(s) 107, 187
HspAI GCGC 1 cut(s) 222
Kpn2I TCCGGA 1 cut(s) 407
KspAI GTTAAC 1 cut(s) 28
LmnI GCTCC 2 cut(s) 137, 286
LpnPI CCDG 9 cut(s) 48, 57, 192, 205, 253, 288, 315, 388, 421
LweI GCATC 2 cut(s) 133, 233
MaeI CTAG 2 cut(s) 81, 225
MaeII ACGT 1 cut(s) 274
MaeIII GTNAC 2 cut(s) 268, 356
MbiI CCGCTC 1 cut(s) 140
MboII GAAGA 2 cut(s) 183, 290
MluCI AATT 2 cut(s) 68, 288
MmeI TCCRAC 1 cut(s) 308
MnlI CCTC 7 cut(s) 271, 360, 363, 377, 389, 404, 463
MroI TCCGGA 1 cut(s) 407
MseI TTAA 4 cut(s) 27, 72, 129, 452
MslI CAYNNNNRTG 1 cut(s) 108
MspCI CTTAAG 1 cut(s) 128
MspI CCGG 1 cut(s) 408
MspR9I CCNGG 1 cut(s) 303
Mva1269I GAATGC 1 cut(s) 241
MvaI CCWGG 1 cut(s) 303
MwoI GCNNNNNNNGC 4 cut(s) 40, 236, 384, 396
NlaIII CATG 2 cut(s) 107, 187
NlaIV GGNNCC 1 cut(s) 282
NmuCI GTSAC 1 cut(s) 356
NspI RCATGY 1 cut(s) 107
PaeR7I CTCGAG 1 cut(s) 164
PciI ACATGT 1 cut(s) 103
PctI GAATGC 1 cut(s) 241
PkrI GCNGC 2 cut(s) 13, 389
PmaCI CACGTG 1 cut(s) 275
PmlI CACGTG 1 cut(s) 275
Ppu21I YACGTR 1 cut(s) 275
PscI ACATGT 1 cut(s) 103
Psp6I CCWGG 1 cut(s) 301
PspCI CACGTG 1 cut(s) 275
PspGI CCWGG 1 cut(s) 301
PspN4I GGNNCC 1 cut(s) 282
PspPI GGNCC 2 cut(s) 89, 405
RsaI GTAC 2 cut(s) 19, 102
RsaNI GTAC 2 cut(s) 18, 101
RseI CAYNNNNRTG 1 cut(s) 108
SaqAI TTAA 4 cut(s) 27, 72, 129, 452
SatI GCNGC 2 cut(s) 12, 388
Sau96I GGNCC 2 cut(s) 89, 405
ScrFI CCNGG 1 cut(s) 303
SetI ASST 6 cut(s) 55, 78, 102, 277, 449, 500
SfaNI GCATC 2 cut(s) 133, 233
Sfr274I CTCGAG 1 cut(s) 164
SinI GGWCC 2 cut(s) 89, 405
SlaI CTCGAG 1 cut(s) 164
SmiMI CAYNNNNRTG 1 cut(s) 108
SmlI CTYRAG 2 cut(s) 128, 164
SmoI CTYRAG 2 cut(s) 128, 164
Sse9I AATT 2 cut(s) 68, 288
SsiI CCGC 5 cut(s) 140, 246, 378, 387, 390
SspMI CTAG 2 cut(s) 81, 225
StyD4I CCNGG 1 cut(s) 301
TaaI ACNGT 3 cut(s) 156, 204, 268
TaiI ACGT 1 cut(s) 277
TaqI TCGA 2 cut(s) 165, 196
TaqII GACCGA 1 cut(s) 106
TasI AATT 2 cut(s) 68, 288
TatI WGTACW 1 cut(s) 17
TauI GCSGC 1 cut(s) 390
Tru1I TTAA 4 cut(s) 27, 72, 129, 452
Tru9I TTAA 4 cut(s) 27, 72, 129, 452
TscAI CASTG 1 cut(s) 327
TseFI GTSAC 1 cut(s) 356
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 356
TspDTI ATGAA 1 cut(s) 465
TspRI CASTG 1 cut(s) 327
Vha464I CTTAAG 1 cut(s) 128
VpaK11BI GGWCC 2 cut(s) 89, 405
XceI RCATGY 1 cut(s) 107
XhoI CTCGAG 1 cut(s) 164
XspI CTAG 2 cut(s) 81, 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.