Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007665

Physical Location & Seq

Genomic Coordinates Reverse (-)

35284050 .. 35286861

Gene Structure 2812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g42270.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGTGATGCTGACTGCAGCAAGTGCAATTGCTAGCTCACCTCTACTGCCAGCAGGGTCAGTTAGTCGATACCATGGACGAGCTGGGCTATATGGGTCTGGTCCGAGAAGAGTTTGTGTGGTATGCTCTAGCATTAGACCAGTGGGGCTTGGCACACGGTTATCACTTGAGGGAAGAAAATCATTATCACCAATGACAGGGTCTCGTCGAATGCAGTCTGCTTTTGTAATATGTGCTTCTTCTTTGAATGCAAGATGCGGTGCAGAGCAAACACAAACTGTTACACGTGAGGCTCCAACAATTACACATCTTCCTGGCAAGGAAAAAAATCCACTGCTAGATGATGGTGGATCGGGATTCCCTCCCAGAGATGATGGTGGTGGTGGTGGCGGAGGGGGTGGTGGTGGAGGCAACTGGTCGGGAGGCTTTGCCTTTTTTGGCTTTCTTCTTTTTCTCAGCTTTCTAAAGGATAAAGAAAGTGAGGGCTCTTATCGAGAAAATAGGAAAAGGTCTTCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

17.99

Weight (kDa)

9.89

Isoelectric Point (pI)

47.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30475 AT1G30475 AT1G30475 AT1G30475 AT1G56200 AT1G56200
fragaria_vesca	FvH4_3g42270 FvH4_3g42270 FvH4_3g42270 FvH4_3g42270 FvH4_3g42270
malus_domestica	MD03G1035300.v1.1 MD11G1037000.v1.1
prunus_persica	Prupe.6G028300_v2.0.a1 Prupe.6G028300_v2.0.a1
pyrus_communis	pycom03g02750 pycom11g03070
rosa_chinensis	RchiOBHm_Chr5g0075591
rosa_laevigata	RLG00000036583
rosa_multiflora	Rmu_sc0001811.1_g000004
rosa_roxburghii	Rroxscaffold_1G00005970
rosa_rugosa	Rorug05G0441500
rosa_samantha	Rh5BG518900
rosa_wichuraiana	Rw5G046180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	258, 390
AclWI	GGATC	1 cut(s)	358
AcvI	CACGTG	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	197
AflIII	ACRYGT	1 cut(s)	284
AgsI	TTSAA	1 cut(s)	247
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	3 cut(s)	36, 83, 459
AluI	AGCT	3 cut(s)	36, 83, 459
Alw26I	GTCTC	1 cut(s)	207
AlwI	GGATC	1 cut(s)	358
ApeKI	GCWGC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	101
AsuHPI	GGTGA	3 cut(s)	16, 30, 180
AsuNHI	GCTAGC	1 cut(s)	32
AvaII	GGWCC	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	488
BbrPI	CACGTG	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	504
BbvI	GCAGC	1 cut(s)	29
BccI	CCATC	2 cut(s)	338, 368
BciT130I	CCWGG	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	207
BfaI	CTAG	3 cut(s)	33, 129, 338
BfmI	CTRYAG	1 cut(s)	15
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
Bme1390I	CCNGG	1 cut(s)	315
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	1 cut(s)	294
BmrFI	CCNGG	1 cut(s)	315
BmsI	GCATC	1 cut(s)	245
BmtI	GCTAGC	1 cut(s)	36
BpiI	GAAGAC	1 cut(s)	504
BpuEI	CTTGAG	1 cut(s)	188
BsaAI	YACGTR	1 cut(s)	287
BsaI	GGTCTC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse1I	ACTGG	2 cut(s)	140, 419
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	73
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	469
BseNI	ACTGG	2 cut(s)	140, 419
BseXI	GCAGC	1 cut(s)	29
BseYI	CCCAGC	1 cut(s)	83
BsgI	GTGCAG	1 cut(s)	282
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmAI	GTCTC	1 cut(s)	207
BsmI	GAATGC	2 cut(s)	216, 253
Bso31I	GGTCTC	1 cut(s)	207
Bsp1286I	GDGCHC	1 cut(s)	488
Bsp143I	GATC	1 cut(s)	350
Bsp19I	CCATGG	1 cut(s)	73
BspACI	CCGC	2 cut(s)	258, 390
BspCNI	CTCAG	1 cut(s)	468
BspLI	GGNNCC	1 cut(s)	294
BspMAI	CTGCAG	1 cut(s)	19
BspOI	GCTAGC	1 cut(s)	36
BspPI	GGATC	1 cut(s)	358
BspTNI	GGTCTC	1 cut(s)	207
BsrI	ACTGG	2 cut(s)	140, 419
BssECI	CCNNGG	1 cut(s)	73
BssMI	GATC	1 cut(s)	350
BssT1I	CCWWGG	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	2 cut(s)	159, 280
Bst6I	CTCTTC	1 cut(s)	103
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstBAI	YACGTR	1 cut(s)	287
BstC8I	GCNNGC	2 cut(s)	34, 51
BstDEI	CTNAG	1 cut(s)	455
BstDSI	CCRYGG	1 cut(s)	73
BstKTI	GATC	1 cut(s)	353
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	1 cut(s)	350
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNI	CCWGG	1 cut(s)	315
BstSCI	CCNGG	1 cut(s)	313
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	29
BstV2I	GAAGAC	1 cut(s)	504
BtgI	CCRYGG	1 cut(s)	73
BtsI	GCAGTG	1 cut(s)	332
BtsIMutI	CAGTG	2 cut(s)	147, 332
Cac8I	GCNNGC	2 cut(s)	34, 51
Cfr13I	GGNCC	1 cut(s)	101
CviAII	CATG	1 cut(s)	74
CviJI	RGCY	9 cut(s)	36, 83, 88, 148, 293, 426, 441, 459, 486
CviKI_1	RGCY	9 cut(s)	36, 83, 88, 148, 293, 426, 441, 459, 486
DdeI	CTNAG	1 cut(s)	455
DpnI	GATC	1 cut(s)	352
DpnII	GATC	1 cut(s)	350
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
EciI	GGCGGA	1 cut(s)	405
Eco130I	CCWWGG	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	488
Eco31I	GGTCTC	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	101
Eco72I	CACGTG	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	73
EcoT38I	GRGCYC	1 cut(s)	488
ErhI	CCWWGG	1 cut(s)	73
FaeI	CATG	1 cut(s)	77
FaiI	YATR	6 cut(s)	75, 91, 93, 124, 232, 517
FatI	CATG	1 cut(s)	73
Fnu4HI	GCNGC	1 cut(s)	18
FriOI	GRGCYC	1 cut(s)	488
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	3 cut(s)	33, 129, 338
GluI	GCNGC	1 cut(s)	18
GsaI	CCCAGC	1 cut(s)	87
Hin1II	CATG	1 cut(s)	77
HinfI	GANTC	1 cut(s)	357
HphI	GGTGA	3 cut(s)	16, 30, 180
Hpy188I	TCNGA	1 cut(s)	105
Hpy188III	TCNNGA	3 cut(s)	354, 420, 494
Hpy99I	CGWCG	1 cut(s)	210
HpyCH4III	ACNGT	2 cut(s)	159, 280
HpyCH4IV	ACGT	1 cut(s)	286
HpyCH4V	TGCA	5 cut(s)	17, 26, 214, 251, 263
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	1 cut(s)	455
HpySE526I	ACGT	1 cut(s)	286
Hsp92II	CATG	1 cut(s)	77
Kzo9I	GATC	1 cut(s)	350
LmnI	GCTCC	1 cut(s)	298
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	1 cut(s)	245
MaeI	CTAG	3 cut(s)	33, 129, 338
MaeII	ACGT	1 cut(s)	286
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	1 cut(s)	352
MboI	GATC	1 cut(s)	350
MboII	GAAGA	6 cut(s)	120, 186, 231, 302, 437, 504
MfeI	CAATTG	1 cut(s)	27
MhlI	GDGCHC	1 cut(s)	488
MluCI	AATT	2 cut(s)	27, 300
MmeI	TCCRAC	1 cut(s)	320
MnlI	CCTC	8 cut(s)	51, 163, 283, 372, 386, 401, 416, 475
MspR9I	CCNGG	1 cut(s)	315
MunI	CAATTG	1 cut(s)	27
Mva1269I	GAATGC	2 cut(s)	216, 253
MvaI	CCWGG	1 cut(s)	315
MwoI	GCNNNNNNNGC	1 cut(s)	23
NcoI	CCATGG	1 cut(s)	73
NdeII	GATC	1 cut(s)	350
NheI	GCTAGC	1 cut(s)	32
NlaIII	CATG	1 cut(s)	77
NlaIV	GGNNCC	1 cut(s)	294
PctI	GAATGC	2 cut(s)	216, 253
PfeI	GAWTC	1 cut(s)	357
PflFI	GACNNNGTC	1 cut(s)	199
PkrI	GCNGC	1 cut(s)	19
PmaCI	CACGTG	1 cut(s)	287
PmlI	CACGTG	1 cut(s)	287
Ppu21I	YACGTR	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	313
PspCI	CACGTG	1 cut(s)	287
PspFI	CCCAGC	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	1 cut(s)	294
PspPI	GGNCC	1 cut(s)	101
PstI	CTGCAG	1 cut(s)	19
PsyI	GACNNNGTC	1 cut(s)	199
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	1 cut(s)	350
Sau96I	GGNCC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	1 cut(s)	488
SetI	ASST	6 cut(s)	38, 43, 85, 289, 461, 512
SfaNI	GCATC	1 cut(s)	245
SfcI	CTRYAG	1 cut(s)	15
SinI	GGWCC	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	2 cut(s)	27, 300
SsiI	CCGC	2 cut(s)	258, 390
SspMI	CTAG	3 cut(s)	33, 129, 338
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	1 cut(s)	73
TaaI	ACNGT	2 cut(s)	159, 280
TaiI	ACGT	1 cut(s)	289
TaqI	TCGA	3 cut(s)	67, 208, 493
TasI	AATT	2 cut(s)	27, 300
TfiI	GAWTC	1 cut(s)	357
TscAI	CASTG	2 cut(s)	147, 339
TseI	GCWGC	1 cut(s)	17
TspDTI	ATGAA	1 cut(s)	504
TspRI	CASTG	2 cut(s)	147, 339
Tth111I	GACNNNGTC	1 cut(s)	199
VpaK11BI	GGWCC	1 cut(s)	101
XcmI	CCANNNNNNNNNTGG	1 cut(s)	80
XspI	CTAG	3 cut(s)	33, 129, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.