Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0007665

Physical Location & Seq

Genomic Coordinates Forward (+)

2401073 .. 2402591

Gene Structure 1519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g03070.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTTGACTGCTTCAAGTACAATCGTTAACTCGCCTGTATTGCCAGCAGTAGGCCGATGCCGTGGACAATTTAAGCTTTCTAGCCGTGGAGCGAAAAAGGTACATTTTGATGGAAAAATGGTGCATCTTAAGATGGAAGTGATGGGGCTTGCACAGTTTCCACTCGAGAGGAGAAATCTGGTCATGGTTTCCAGTCGAACACAGTCTGCTTCTGTCATATGCGCTAGTGCTTTGAATGCCAGATGCGGTGCAGAACAAACGCAGACTGTTACACGTGAGGCTCCAACAATTACACATCTTCCTGGCAAGGAGAAGTCCCCACTGCTTGATGATGGCGGGAGTGGCTTCCCTCCTCGTGACGATGGCGATGGCGGTGGTGGTGGAGGCGGCGGTGGAGGCAACTGGTCCGGAGGTTTTGCCTTTTTCGGCTTTCTTCTTTTCCTAAGCTTCTTAAAGGATAAAGAAAGTGAGGGTTCATATCGAGAAAATAGGAGAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

17.66

Weight (kDa)

9.72

Isoelectric Point (pI)

47.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30475 AT1G30475 AT1G30475 AT1G30475 AT1G56200 AT1G56200
fragaria_vesca	FvH4_3g42270 FvH4_3g42270 FvH4_3g42270 FvH4_3g42270 FvH4_3g42270
malus_domestica	MD03G1035300.v1.1 MD11G1037000.v1.1
prunus_persica	Prupe.6G028300_v2.0.a1 Prupe.6G028300_v2.0.a1
pyrus_communis	pycom03g02750 pycom11g03070
rosa_chinensis	RchiOBHm_Chr5g0075591
rosa_laevigata	RLG00000036583
rosa_multiflora	Rmu_sc0001811.1_g000004
rosa_roxburghii	Rroxscaffold_1G00005970
rosa_rugosa	Rorug05G0441500
rosa_samantha	Rh5BG518900
rosa_wichuraiana	Rw5G046180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	407
AciI	CCGC	5 cut(s)	246, 336, 372, 387, 390
AcvI	CACGTG	1 cut(s)	275
AfaI	GTAC	2 cut(s)	19, 102
AfiI	CCNNNNNNNGG	1 cut(s)	50
AflII	CTTAAG	1 cut(s)	128
AflIII	ACRYGT	1 cut(s)	272
AgsI	TTSAA	2 cut(s)	15, 235
AjnI	CCWGG	1 cut(s)	301
AluBI	AGCT	2 cut(s)	76, 447
AluI	AGCT	2 cut(s)	76, 447
Ama87I	CYCGRG	1 cut(s)	164
Aor13HI	TCCGGA	1 cut(s)	407
AoxI	GGCC	1 cut(s)	52
AspLEI	GCGC	1 cut(s)	224
AspS9I	GGNCC	1 cut(s)	405
AvaI	CYCGRG	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	405
BauI	CACGAG	1 cut(s)	354
BbrPI	CACGTG	1 cut(s)	275
BccI	CCATC	6 cut(s)	104, 127, 136, 326, 356, 362
BceAI	ACGGC	2 cut(s)	45, 69
BciT130I	CCWGG	1 cut(s)	303
BfaI	CTAG	2 cut(s)	81, 225
BfrI	CTTAAG	1 cut(s)	128
BisI	GCNGC	1 cut(s)	388
BlsI	GCNGC	1 cut(s)	389
Bme1390I	CCNGG	1 cut(s)	303
Bme18I	GGWCC	1 cut(s)	405
BmeT110I	CYCGRG	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	405
BmiI	GGNNCC	1 cut(s)	282
BmrFI	CCNGG	1 cut(s)	303
BmsI	GCATC	3 cut(s)	47, 133, 233
Bpu10I	CCTNAGC	1 cut(s)	443
BsaAI	YACGTR	1 cut(s)	275
BsaJI	CCNNGG	2 cut(s)	61, 85
BsaWI	WCCGGW	1 cut(s)	407
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse1I	ACTGG	2 cut(s)	192, 407
BseAI	TCCGGA	1 cut(s)	407
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	2 cut(s)	61, 85
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseNI	ACTGG	2 cut(s)	192, 407
BseRI	GAGGAG	2 cut(s)	184, 342
BsgI	GTGCAG	1 cut(s)	270
BshFI	GGCC	1 cut(s)	54
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	408
BslFI	GGGAC	1 cut(s)	301
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	301
BsmI	GAATGC	1 cut(s)	241
BsnI	GGCC	1 cut(s)	54
BsoBI	CYCGRG	1 cut(s)	164
Bsp13I	TCCGGA	1 cut(s)	407
BspACI	CCGC	5 cut(s)	246, 336, 372, 387, 390
BspANI	GGCC	1 cut(s)	54
BspEI	TCCGGA	1 cut(s)	407
BspLI	GGNNCC	1 cut(s)	282
BspTI	CTTAAG	1 cut(s)	128
BsrI	ACTGG	2 cut(s)	192, 407
BssECI	CCNNGG	2 cut(s)	61, 85
BssSI	CACGAG	1 cut(s)	354
Bst2BI	CACGAG	1 cut(s)	354
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	3 cut(s)	156, 204, 268
BstAFI	CTTAAG	1 cut(s)	128
BstBAI	YACGTR	1 cut(s)	275
BstC8I	GCNNGC	2 cut(s)	45, 150
BstDEI	CTNAG	1 cut(s)	443
BstDSI	CCRYGG	2 cut(s)	61, 85
BstHHI	GCGC	1 cut(s)	224
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 236, 342, 396
BstNI	CCWGG	1 cut(s)	303
BstSCI	CCNGG	1 cut(s)	301
BsuRI	GGCC	1 cut(s)	54
BtgI	CCRYGG	2 cut(s)	61, 85
BtgZI	GCGATG	1 cut(s)	381
BtsI	GCAGTG	1 cut(s)	320
BtsIMutI	CAGTG	1 cut(s)	320
Cac8I	GCNNGC	2 cut(s)	45, 150
CfoI	GCGC	1 cut(s)	224
Cfr13I	GGNCC	1 cut(s)	405
Csp6I	GTAC	2 cut(s)	18, 101
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	8 cut(s)	54, 76, 84, 148, 281, 345, 429, 447
CviKI_1	RGCY	8 cut(s)	54, 76, 84, 148, 281, 345, 429, 447
CviQI	GTAC	2 cut(s)	18, 101
DdeI	CTNAG	1 cut(s)	443
Eco47I	GGWCC	1 cut(s)	405
Eco72I	CACGTG	1 cut(s)	275
Eco88I	CYCGRG	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	301
FaeI	CATG	1 cut(s)	187
FaiI	YATR	4 cut(s)	185, 218, 220, 478
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	1 cut(s)	183
FauI	CCCGC	1 cut(s)	329
FauNDI	CATATG	1 cut(s)	218
Fnu4HI	GCNGC	1 cut(s)	388
Fsp4HI	GCNGC	1 cut(s)	388
FspBI	CTAG	2 cut(s)	81, 225
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	1 cut(s)	388
HaeIII	GGCC	1 cut(s)	54
HapII	CCGG	1 cut(s)	408
HhaI	GCGC	1 cut(s)	224
Hin1II	CATG	1 cut(s)	187
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HincII	GTYRAC	2 cut(s)	6, 28
HindII	GTYRAC	2 cut(s)	6, 28
HindIII	AAGCTT	2 cut(s)	74, 445
HpaI	GTTAAC	1 cut(s)	28
HpaII	CCGG	1 cut(s)	408
Hpy166II	GTNNAC	3 cut(s)	6, 28, 65
Hpy188III	TCNNGA	4 cut(s)	166, 356, 408, 482
Hpy8I	GTNNAC	3 cut(s)	6, 28, 65
HpyAV	CCTTC	1 cut(s)	489
HpyCH4III	ACNGT	3 cut(s)	156, 204, 268
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	3 cut(s)	124, 152, 251
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 236, 342, 396
HpyF3I	CTNAG	1 cut(s)	443
HpySE526I	ACGT	1 cut(s)	274
Hsp92II	CATG	1 cut(s)	187
HspAI	GCGC	1 cut(s)	222
Kpn2I	TCCGGA	1 cut(s)	407
KspAI	GTTAAC	1 cut(s)	28
LmnI	GCTCC	2 cut(s)	89, 286
LpnPI	CCDG	9 cut(s)	48, 57, 164, 205, 253, 288, 315, 388, 421
LweI	GCATC	3 cut(s)	47, 133, 233
MaeI	CTAG	2 cut(s)	81, 225
MaeII	ACGT	1 cut(s)	274
MaeIII	GTNAC	2 cut(s)	268, 356
MboII	GAAGA	2 cut(s)	290, 425
MluCI	AATT	2 cut(s)	68, 288
MmeI	TCCRAC	1 cut(s)	308
MnlI	CCTC	8 cut(s)	162, 271, 360, 363, 377, 389, 404, 463
MroI	TCCGGA	1 cut(s)	407
MseI	TTAA	4 cut(s)	27, 72, 129, 452
MslI	CAYNNNNRTG	1 cut(s)	108
MspCI	CTTAAG	1 cut(s)	128
MspI	CCGG	1 cut(s)	408
MspR9I	CCNGG	1 cut(s)	303
Mva1269I	GAATGC	1 cut(s)	241
MvaI	CCWGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	4 cut(s)	40, 236, 342, 396
NdeI	CATATG	1 cut(s)	218
NlaIII	CATG	1 cut(s)	187
NlaIV	GGNNCC	1 cut(s)	282
NmuCI	GTSAC	1 cut(s)	356
PaeR7I	CTCGAG	1 cut(s)	164
PctI	GAATGC	1 cut(s)	241
PkrI	GCNGC	1 cut(s)	389
PmaCI	CACGTG	1 cut(s)	275
PmlI	CACGTG	1 cut(s)	275
Ppu21I	YACGTR	1 cut(s)	275
Psp6I	CCWGG	1 cut(s)	301
PspCI	CACGTG	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	1 cut(s)	282
PspPI	GGNCC	1 cut(s)	405
RsaI	GTAC	2 cut(s)	19, 102
RsaNI	GTAC	2 cut(s)	18, 101
RseI	CAYNNNNRTG	1 cut(s)	108
SaqAI	TTAA	4 cut(s)	27, 72, 129, 452
SatI	GCNGC	1 cut(s)	388
Sau96I	GGNCC	1 cut(s)	405
ScrFI	CCNGG	1 cut(s)	303
SetI	ASST	6 cut(s)	78, 102, 277, 415, 449, 500
SfaNI	GCATC	3 cut(s)	47, 133, 233
Sfr274I	CTCGAG	1 cut(s)	164
SinI	GGWCC	1 cut(s)	405
SlaI	CTCGAG	1 cut(s)	164
SmiMI	CAYNNNNRTG	1 cut(s)	108
SmlI	CTYRAG	2 cut(s)	128, 164
SmoI	CTYRAG	2 cut(s)	128, 164
Sse9I	AATT	2 cut(s)	68, 288
SsiI	CCGC	5 cut(s)	246, 336, 372, 387, 390
SspMI	CTAG	2 cut(s)	81, 225
StyD4I	CCNGG	1 cut(s)	301
TaaI	ACNGT	3 cut(s)	156, 204, 268
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	3 cut(s)	165, 196, 481
TasI	AATT	2 cut(s)	68, 288
TatI	WGTACW	1 cut(s)	17
TauI	GCSGC	1 cut(s)	390
Tru1I	TTAA	4 cut(s)	27, 72, 129, 452
Tru9I	TTAA	4 cut(s)	27, 72, 129, 452
TscAI	CASTG	1 cut(s)	327
TseFI	GTSAC	1 cut(s)	356
Tsp45I	GTSAC	1 cut(s)	356
TspDTI	ATGAA	1 cut(s)	465
TspRI	CASTG	1 cut(s)	327
Vha464I	CTTAAG	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	405
XhoI	CTCGAG	1 cut(s)	164
XspI	CTAG	2 cut(s)	81, 225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.