Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007665

Physical Location & Seq

Genomic Coordinates Reverse (-)

82115837 .. 82122370

Gene Structure 6534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036583

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGCTGAAAAGGTGGATAAAAAATTCCAAGGCCCAAGGGTGAAGTGCAAGGGTCCCAACCTAACCATACCAGAGTTTAGTTTGGAAGATTTCAAGAAGCATTCACATATTGCCACACCACCATCTGCAAAACCTCAAAGTGCAAGGTGGAAGAACTGCCTTTGCTCACCCACCACGCACATCGGATCATTCCGTTGCAGACACCACAGGACTTCAATTCCCCGCGGAGGTTCTGTTGGCTCCAACCTCTCCAACTACGCGGAGCTGACCGGGGCTCCGGCTGTTCAGTTTCAAAGGAGGAGTCTTTATCCGGTGGTTGTTATTATCAAGATGGTGATGCTTACTGCAGCAAGTGCAATTGCTAGCTCACCTCTACTGCCAGCAGGGTCAGTGGGTCAACAGGGCAGACGAGCTGGGGTTTATGGGTCCGGTCCAAGAAGAGTTTGTGTGGATAGAAGTGTGGTACGCTCTGACATTAGACCAGTGGGGCTTGGCACACGGTTATCACTTGAGAGAAGAAAACCATTATCACCAATCACGGGGTCTCGTCGAACGCAGTCTGCTTCTGTAATTTGTGCTTCTTCTTTGAATGCCAGATGCGGTGCAGAGCAAACGCAAACTGTTACACGTGAGGCTCCAACAATTACACATCTTCCTGGCAAGGAAAAATCTCCGCAGCTTGATGACGGCGGAACTGGATTCCCTCCCAGAGATGATGGTGGCGGTGGTGGCGGTGGGGGTGGTGGTGGAGGCAACTGGTCGGGAGGCTTCGCGTTTTTTGGATTTCTTCTTTTCCTCAGCTTTCTAAAGGATAAAGAAAGTGAAGGTTCTTATCGAGAAAATAGAAAAAGGTCGTCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

288

Amino Acids

30.66

Weight (kDa)

10.29

Isoelectric Point (pI)

55.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30475 AT1G30475 AT1G30475 AT1G30475 AT1G56200 AT1G56200
fragaria_vesca	FvH4_3g42270 FvH4_3g42270 FvH4_3g42270 FvH4_3g42270 FvH4_3g42270
malus_domestica	MD03G1035300.v1.1 MD11G1037000.v1.1
prunus_persica	Prupe.6G028300_v2.0.a1 Prupe.6G028300_v2.0.a1
pyrus_communis	pycom03g02750 pycom11g03070
rosa_chinensis	RchiOBHm_Chr5g0075591
rosa_laevigata	RLG00000036583
rosa_multiflora	Rmu_sc0001811.1_g000004
rosa_roxburghii	Rroxscaffold_1G00005970
rosa_rugosa	Rorug05G0441500
rosa_samantha	Rh5BG518900
rosa_wichuraiana	Rw5G046180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	225, 260, 773
AciI	CCGC	8 cut(s)	223, 225, 260, 600, 674, 690, 723, 732
AclWI	GGATC	1 cut(s)	193
AcsI	RAATTY	1 cut(s)	23
AcvI	CACGTG	1 cut(s)	629
AfaI	GTAC	1 cut(s)	465
AfiI	CCNNNNNNNGG	2 cut(s)	227, 539
AflIII	ACRYGT	1 cut(s)	626
AgsI	TTSAA	4 cut(s)	94, 216, 293, 589
AjnI	CCWGG	1 cut(s)	655
AluBI	AGCT	5 cut(s)	265, 366, 413, 679, 801
AluI	AGCT	5 cut(s)	265, 366, 413, 679, 801
Alw26I	GTCTC	1 cut(s)	549
AlwI	GGATC	1 cut(s)	193
AoxI	GGCC	1 cut(s)	31
ApeKI	GCWGC	2 cut(s)	347, 676
ApoI	RAATTY	1 cut(s)	23
ArsI	GACNNNNNNTTYG	2 cut(s)	286, 318
AspS9I	GGNCC	4 cut(s)	32, 53, 426, 431
AsuC2I	CCSGG	1 cut(s)	271
AsuHPI	GGTGA	5 cut(s)	52, 159, 346, 360, 522
AsuNHI	GCTAGC	1 cut(s)	362
AvaII	GGWCC	3 cut(s)	53, 426, 431
BanII	GRGCYC	1 cut(s)	277
BbrPI	CACGTG	1 cut(s)	629
BbvCI	CCTCAGC	1 cut(s)	797
BbvI	GCAGC	2 cut(s)	359, 688
BccI	CCATC	3 cut(s)	130, 325, 710
BceAI	ACGGC	1 cut(s)	703
BciT130I	CCWGG	1 cut(s)	657
BcnI	CCSGG	1 cut(s)	271
BcoDI	GTCTC	1 cut(s)	549
BfaI	CTAG	1 cut(s)	363
BfmI	CTRYAG	1 cut(s)	345
BisI	GCNGC	2 cut(s)	348, 677
BlsI	GCNGC	2 cut(s)	349, 678
Bme1390I	CCNGG	2 cut(s)	271, 657
Bme18I	GGWCC	3 cut(s)	53, 426, 431
BmgT120I	GGNCC	4 cut(s)	32, 53, 426, 431
BmiI	GGNNCC	6 cut(s)	54, 55, 241, 276, 427, 636
BmrFI	CCNGG	2 cut(s)	271, 657
BmsI	GCATC	2 cut(s)	327, 587
BmtI	GCTAGC	1 cut(s)	366
Bpu10I	CCTNAGC	1 cut(s)	797
BpuEI	CTTGAG	1 cut(s)	530
BpuMI	CCSGG	1 cut(s)	271
BsaAI	YACGTR	1 cut(s)	629
BsaI	GGTCTC	1 cut(s)	549
BsaJI	CCNNGG	4 cut(s)	28, 35, 223, 270
BsaWI	WCCGGW	2 cut(s)	310, 428
BsaXI	ACNNNNNCTCC	4 cut(s)	219, 249, 259, 289
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 539
Bse1I	ACTGG	3 cut(s)	482, 700, 761
BseBI	CCWGG	1 cut(s)	657
BseDI	CCNNGG	4 cut(s)	28, 35, 223, 270
BseLI	CCNNNNNNNGG	2 cut(s)	227, 539
BseMII	CTCAG	1 cut(s)	811
BseNI	ACTGG	3 cut(s)	482, 700, 761
BseRI	GAGGAG	1 cut(s)	313
BseXI	GCAGC	2 cut(s)	359, 688
BseYI	CCCAGC	1 cut(s)	413
BsgI	GTGCAG	1 cut(s)	624
Bsh1236I	CGCG	3 cut(s)	225, 260, 773
BshFI	GGCC	1 cut(s)	33
BsiSI	CCGG	4 cut(s)	270, 278, 311, 429
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	2 cut(s)	227, 539
BsmAI	GTCTC	1 cut(s)	549
BsmFI	GGGAC	1 cut(s)	39
BsmI	GAATGC	2 cut(s)	100, 595
BsnI	GGCC	1 cut(s)	33
Bso31I	GGTCTC	1 cut(s)	549
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp143I	GATC	1 cut(s)	185
BspACI	CCGC	8 cut(s)	223, 225, 260, 600, 674, 690, 723, 732
BspANI	GGCC	1 cut(s)	33
BspCNI	CTCAG	1 cut(s)	810
BspFNI	CGCG	3 cut(s)	225, 260, 773
BspLI	GGNNCC	6 cut(s)	54, 55, 241, 276, 427, 636
BspMAI	CTGCAG	1 cut(s)	349
BspOI	GCTAGC	1 cut(s)	366
BspPI	GGATC	1 cut(s)	193
BspTNI	GGTCTC	1 cut(s)	549
BsrI	ACTGG	3 cut(s)	482, 700, 761
BssECI	CCNNGG	4 cut(s)	28, 35, 223, 270
BssMI	GATC	1 cut(s)	185
BssT1I	CCWWGG	2 cut(s)	28, 35
Bst2UI	CCWGG	1 cut(s)	657
Bst4CI	ACNGT	2 cut(s)	501, 622
Bst6I	CTCTTC	1 cut(s)	433
BstAPI	GCANNNNNTGC	1 cut(s)	353
BstBAI	YACGTR	1 cut(s)	629
BstC8I	GCNNGC	2 cut(s)	364, 381
BstDEI	CTNAG	1 cut(s)	797
BstDSI	CCRYGG	1 cut(s)	223
BstFNI	CGCG	3 cut(s)	225, 260, 773
BstKTI	GATC	1 cut(s)	188
BstMAI	GTCTC	1 cut(s)	549
BstMBI	GATC	1 cut(s)	185
BstMWI	GCNNNNNNNGC	2 cut(s)	353, 729
BstNI	CCWGG	1 cut(s)	657
BstSCI	CCNGG	2 cut(s)	269, 655
BstSFI	CTRYAG	1 cut(s)	345
BstUI	CGCG	3 cut(s)	225, 260, 773
BstV1I	GCAGC	2 cut(s)	359, 688
BsuRI	GGCC	1 cut(s)	33
BtgI	CCRYGG	1 cut(s)	223
BtsIMutI	CAGTG	2 cut(s)	396, 489
Cac8I	GCNNGC	2 cut(s)	364, 381
Cfr13I	GGNCC	4 cut(s)	32, 53, 426, 431
Cfr42I	CCGCGG	1 cut(s)	226
Csp6I	GTAC	1 cut(s)	464
CviQI	GTAC	1 cut(s)	464
DdeI	CTNAG	1 cut(s)	797
DpnI	GATC	1 cut(s)	187
DpnII	GATC	1 cut(s)	185
Eam1104I	CTCTTC	1 cut(s)	433
EarI	CTCTTC	1 cut(s)	433
EciI	GGCGGA	1 cut(s)	705
Eco130I	CCWWGG	2 cut(s)	28, 35
Eco24I	GRGCYC	1 cut(s)	277
Eco31I	GGTCTC	1 cut(s)	549
Eco47I	GGWCC	3 cut(s)	53, 426, 431
Eco72I	CACGTG	1 cut(s)	629
EcoO109I	RGGNCCY	1 cut(s)	53
EcoRII	CCWGG	1 cut(s)	655
EcoT14I	CCWWGG	2 cut(s)	28, 35
EcoT38I	GRGCYC	1 cut(s)	277
ErhI	CCWWGG	2 cut(s)	28, 35
FaiI	YATR	4 cut(s)	68, 108, 423, 859
FaqI	GGGAC	1 cut(s)	39
FauI	CCCGC	1 cut(s)	230
Fnu4HI	GCNGC	2 cut(s)	348, 677
FriOI	GRGCYC	1 cut(s)	277
Fsp4HI	GCNGC	2 cut(s)	348, 677
FspBI	CTAG	1 cut(s)	363
GluI	GCNGC	2 cut(s)	348, 677
GsaI	CCCAGC	1 cut(s)	417
HaeIII	GGCC	1 cut(s)	33
HapII	CCGG	4 cut(s)	270, 278, 311, 429
HincII	GTYRAC	1 cut(s)	398
HindII	GTYRAC	1 cut(s)	398
HinfI	GANTC	2 cut(s)	301, 699
HpaII	CCGG	4 cut(s)	270, 278, 311, 429
HphI	GGTGA	5 cut(s)	52, 159, 346, 360, 522
Hpy166II	GTNNAC	1 cut(s)	398
Hpy188I	TCNGA	2 cut(s)	185, 472
Hpy188III	TCNNGA	4 cut(s)	94, 328, 762, 836
Hpy8I	GTNNAC	1 cut(s)	398
Hpy99I	CGWCG	1 cut(s)	552
HpyAV	CCTTC	1 cut(s)	818
HpyCH4III	ACNGT	2 cut(s)	501, 622
HpyCH4IV	ACGT	1 cut(s)	628
HpyCH4V	TGCA	7 cut(s)	48, 128, 143, 198, 347, 356, 605
HpyF10VI	GCNNNNNNNGC	2 cut(s)	353, 729
HpyF3I	CTNAG	1 cut(s)	797
HpySE526I	ACGT	1 cut(s)	628
KflI	GGGWCCC	1 cut(s)	53
KspI	CCGCGG	1 cut(s)	226
Kzo9I	GATC	1 cut(s)	185
LmnI	GCTCC	4 cut(s)	245, 262, 280, 640
Lsp1109I	GCAGC	2 cut(s)	359, 688
LweI	GCATC	2 cut(s)	327, 587
MaeI	CTAG	1 cut(s)	363
MaeII	ACGT	1 cut(s)	628
MaeIII	GTNAC	1 cut(s)	622
MalI	GATC	1 cut(s)	187
MboI	GATC	1 cut(s)	185
MboII	GAAGA	7 cut(s)	98, 163, 450, 528, 573, 644, 779
MfeI	CAATTG	1 cut(s)	357
MhlI	GDGCHC	1 cut(s)	277
MluCI	AATT	5 cut(s)	23, 216, 357, 570, 642
MlyI	GAGTC	1 cut(s)	310
MmeI	TCCRAC	3 cut(s)	267, 276, 662
MspA1I	CMGCKG	1 cut(s)	225
MspI	CCGG	4 cut(s)	270, 278, 311, 429
MspR9I	CCNGG	2 cut(s)	271, 657
MunI	CAATTG	1 cut(s)	357
Mva1269I	GAATGC	2 cut(s)	100, 595
MvaI	CCWGG	1 cut(s)	657
MvnI	CGCG	3 cut(s)	225, 260, 773
MwoI	GCNNNNNNNGC	2 cut(s)	353, 729
NciI	CCSGG	1 cut(s)	271
NdeII	GATC	1 cut(s)	185
NheI	GCTAGC	1 cut(s)	362
NlaIV	GGNNCC	6 cut(s)	54, 55, 241, 276, 427, 636
PctI	GAATGC	2 cut(s)	100, 595
PfeI	GAWTC	1 cut(s)	699
PkrI	GCNGC	2 cut(s)	349, 678
PleI	GAGTC	1 cut(s)	309
PmaCI	CACGTG	1 cut(s)	629
PmlI	CACGTG	1 cut(s)	629
PpsI	GAGTC	1 cut(s)	309
Ppu21I	YACGTR	1 cut(s)	629
PpuMI	RGGWCCY	1 cut(s)	53
Psp5II	RGGWCCY	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	655
PspCI	CACGTG	1 cut(s)	629
PspFI	CCCAGC	1 cut(s)	413
PspGI	CCWGG	1 cut(s)	655
PspN4I	GGNNCC	6 cut(s)	54, 55, 241, 276, 427, 636
PspPI	GGNCC	4 cut(s)	32, 53, 426, 431
PspPPI	RGGWCCY	1 cut(s)	53
PstI	CTGCAG	1 cut(s)	349
RsaI	GTAC	1 cut(s)	465
RsaNI	GTAC	1 cut(s)	464
SacII	CCGCGG	1 cut(s)	226
SatI	GCNGC	2 cut(s)	348, 677
Sau3AI	GATC	1 cut(s)	185
Sau96I	GGNCC	4 cut(s)	32, 53, 426, 431
SchI	GAGTC	1 cut(s)	310
ScrFI	CCNGG	2 cut(s)	271, 657
SduI	GDGCHC	1 cut(s)	277
SfaNI	GCATC	2 cut(s)	327, 587
SfcI	CTRYAG	1 cut(s)	345
Sfr303I	CCGCGG	1 cut(s)	226
SgrBI	CCGCGG	1 cut(s)	226
SinI	GGWCC	3 cut(s)	53, 426, 431
SmlI	CTYRAG	1 cut(s)	509
SmoI	CTYRAG	1 cut(s)	509
Sse9I	AATT	5 cut(s)	23, 216, 357, 570, 642
SsiI	CCGC	8 cut(s)	223, 225, 260, 600, 674, 690, 723, 732
SspMI	CTAG	1 cut(s)	363
StyD4I	CCNGG	2 cut(s)	269, 655
StyI	CCWWGG	2 cut(s)	28, 35
TaaI	ACNGT	2 cut(s)	501, 622
TaiI	ACGT	1 cut(s)	631
TaqI	TCGA	2 cut(s)	550, 835
TasI	AATT	5 cut(s)	23, 216, 357, 570, 642
TfiI	GAWTC	1 cut(s)	699
TscAI	CASTG	2 cut(s)	396, 489
TseI	GCWGC	2 cut(s)	347, 676
TspGWI	ACGGA	1 cut(s)	182
TspRI	CASTG	2 cut(s)	396, 489
VpaK11BI	GGWCC	3 cut(s)	53, 426, 431
XapI	RAATTY	1 cut(s)	23
XspI	CTAG	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.