Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0007665

Physical Location & Seq

Genomic Coordinates Forward (+)

2835331 .. 2837584

Gene Structure 2254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1035300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGCCAATGTTGACTGGTGCAAGTGCAATCGTGAACTCGCCTCCATTGCCAGCAGGTCAGTGCCGTGGACAATTTAAGCTTTCTAGCTGTGGACCGAAAAAAGTACATGTTGATGGAAAAATGGTGCATCTTAAGATAGGAGCGGTGGGGCTTGGTGCACAGTTTCCACTCGAGAGAAGAAATCCAGTCACGGTTTCAAATCGAAGGCAGTCTGCTTCTGTGATATGTGCTAGTGCCTTGAATGCCAGATGTGGTGCAGAGCAAACGCAGACTGTTACACGTGAGGCTCCAACAATTACACATCTCCCTGGCAAGGAGAAGTCCCCACTGCTTGATGATGGTGGGAGTGGCTTCCCTCCTCGTGACGATGGTGATGGCGGTGGCGGTGGAGGTGGCGGTGGAGGCAACTTTTCCGGAGGCTTTGCCTTTTTCGGCTTTCTTCTTTTCCTAAGCTTCTTAAAGGATAAAGAAAGTGAGGGTTCCTATCGAGAGAATAGGAGAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

17.53

Weight (kDa)

9.59

Isoelectric Point (pI)

46.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30475 AT1G30475 AT1G30475 AT1G30475 AT1G56200 AT1G56200
fragaria_vesca	FvH4_3g42270 FvH4_3g42270 FvH4_3g42270 FvH4_3g42270 FvH4_3g42270
malus_domestica	MD03G1035300.v1.1 MD11G1037000.v1.1
prunus_persica	Prupe.6G028300_v2.0.a1 Prupe.6G028300_v2.0.a1
pyrus_communis	pycom03g02750 pycom11g03070
rosa_chinensis	RchiOBHm_Chr5g0075591
rosa_laevigata	RLG00000036583
rosa_multiflora	Rmu_sc0001811.1_g000004
rosa_roxburghii	Rroxscaffold_1G00005970
rosa_rugosa	Rorug05G0441500
rosa_samantha	Rh5BG518900
rosa_wichuraiana	Rw5G046180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	44
AccBSI	CCGCTC	1 cut(s)	143
AccIII	TCCGGA	1 cut(s)	413
AciI	CCGC	4 cut(s)	143, 378, 384, 396
AcvI	CACGTG	1 cut(s)	281
AfaI	GTAC	1 cut(s)	105
AfiI	CCNNNNNNNGG	1 cut(s)	313
AflII	CTTAAG	1 cut(s)	131
AflIII	ACRYGT	2 cut(s)	106, 278
AgsI	TTSAA	2 cut(s)	198, 241
AjnI	CCWGG	1 cut(s)	307
AluBI	AGCT	3 cut(s)	79, 87, 453
AluI	AGCT	3 cut(s)	79, 87, 453
Alw21I	GWGCWC	1 cut(s)	160
Alw44I	GTGCAC	1 cut(s)	156
Ama87I	CYCGRG	1 cut(s)	170
Aor13HI	TCCGGA	1 cut(s)	413
ApaLI	GTGCAC	1 cut(s)	156
AspS9I	GGNCC	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	383
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	92
BaeGI	GKGCMC	1 cut(s)	160
BauI	CACGAG	1 cut(s)	360
BbrPI	CACGTG	1 cut(s)	281
Bbv12I	GWGCWC	1 cut(s)	160
BccI	CCATC	4 cut(s)	107, 332, 362, 368
BceAI	ACGGC	1 cut(s)	48
BciT130I	CCWGG	1 cut(s)	309
BfaI	CTAG	2 cut(s)	84, 231
BfrI	CTTAAG	1 cut(s)	131
BfuAI	ACCTGC	1 cut(s)	44
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	1 cut(s)	92
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	92
BmiI	GGNNCC	2 cut(s)	288, 481
BmrFI	CCNGG	1 cut(s)	309
BmsI	GCATC	1 cut(s)	136
Bpu10I	CCTNAGC	1 cut(s)	449
BsaAI	YACGTR	1 cut(s)	281
BsaJI	CCNNGG	2 cut(s)	64, 307
BsaWI	WCCGGW	1 cut(s)	413
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse1I	ACTGG	2 cut(s)	19, 185
Bse3DI	GCAATG	1 cut(s)	44
BseAI	TCCGGA	1 cut(s)	413
BseBI	CCWGG	1 cut(s)	309
BseDI	CCNNGG	2 cut(s)	64, 307
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMI	GCAATG	1 cut(s)	44
BseNI	ACTGG	2 cut(s)	19, 185
BseRI	GAGGAG	1 cut(s)	348
BseSI	GKGCMC	1 cut(s)	160
BsgI	GTGCAG	1 cut(s)	276
BsiHKAI	GWGCWC	1 cut(s)	160
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	414
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmFI	GGGAC	1 cut(s)	307
BsmI	GAATGC	1 cut(s)	247
BsoBI	CYCGRG	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp13I	TCCGGA	1 cut(s)	413
BspACI	CCGC	4 cut(s)	143, 378, 384, 396
BspEI	TCCGGA	1 cut(s)	413
BspLI	GGNNCC	2 cut(s)	288, 481
BspMI	ACCTGC	1 cut(s)	44
BspTI	CTTAAG	1 cut(s)	131
BsrBI	CCGCTC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	44
BsrI	ACTGG	2 cut(s)	19, 185
BssECI	CCNNGG	2 cut(s)	64, 307
BssSI	CACGAG	1 cut(s)	360
Bst2BI	CACGAG	1 cut(s)	360
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	3 cut(s)	162, 193, 274
BstAFI	CTTAAG	1 cut(s)	131
BstBAI	YACGTR	1 cut(s)	281
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	1 cut(s)	449
BstDSI	CCRYGG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	3 cut(s)	46, 242, 402
BstNI	CCWGG	1 cut(s)	309
BstNSI	RCATGY	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	307
BstSLI	GKGCMC	1 cut(s)	160
BtgI	CCRYGG	1 cut(s)	64
BtsI	GCAGTG	1 cut(s)	326
BtsIMutI	CAGTG	2 cut(s)	65, 326
BveI	ACCTGC	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	51
Cfr13I	GGNCC	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	104
CviAII	CATG	1 cut(s)	107
CviJI	RGCY	8 cut(s)	79, 87, 151, 287, 351, 420, 435, 453
CviKI_1	RGCY	8 cut(s)	79, 87, 151, 287, 351, 420, 435, 453
CviQI	GTAC	1 cut(s)	104
DdeI	CTNAG	1 cut(s)	449
Eco47I	GGWCC	1 cut(s)	92
Eco72I	CACGTG	1 cut(s)	281
Eco88I	CYCGRG	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	307
FaeI	CATG	1 cut(s)	110
FaiI	YATR	2 cut(s)	108, 226
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	1 cut(s)	106
FspBI	CTAG	2 cut(s)	84, 231
HapII	CCGG	1 cut(s)	414
Hin1II	CATG	1 cut(s)	110
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HindIII	AAGCTT	2 cut(s)	77, 451
HpaII	CCGG	1 cut(s)	414
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	5 cut(s)	12, 34, 68, 92, 158
Hpy188III	TCNNGA	5 cut(s)	31, 172, 362, 414, 488
Hpy8I	GTNNAC	5 cut(s)	12, 34, 68, 92, 158
HpyAV	CCTTC	2 cut(s)	198, 495
HpyCH4III	ACNGT	3 cut(s)	162, 193, 274
HpyCH4IV	ACGT	1 cut(s)	280
HpyCH4V	TGCA	5 cut(s)	20, 26, 127, 158, 257
HpyF10VI	GCNNNNNNNGC	3 cut(s)	46, 242, 402
HpyF3I	CTNAG	1 cut(s)	449
HpySE526I	ACGT	1 cut(s)	280
Hsp92II	CATG	1 cut(s)	110
Kpn2I	TCCGGA	1 cut(s)	413
LmnI	GCTCC	2 cut(s)	140, 292
LpnPI	CCDG	7 cut(s)	39, 63, 198, 259, 294, 321, 427
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	2 cut(s)	84, 231
MaeII	ACGT	1 cut(s)	280
MaeIII	GTNAC	3 cut(s)	187, 274, 362
MbiI	CCGCTC	1 cut(s)	143
MboII	GAAGA	2 cut(s)	189, 431
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	2 cut(s)	71, 294
MmeI	TCCRAC	1 cut(s)	314
MnlI	CCTC	8 cut(s)	51, 277, 366, 369, 383, 395, 410, 469
MroI	TCCGGA	1 cut(s)	413
MseI	TTAA	3 cut(s)	75, 132, 458
MslI	CAYNNNNRTG	1 cut(s)	111
MspCI	CTTAAG	1 cut(s)	131
MspI	CCGG	1 cut(s)	414
MspR9I	CCNGG	1 cut(s)	309
Mva1269I	GAATGC	1 cut(s)	247
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	3 cut(s)	46, 242, 402
NlaIII	CATG	1 cut(s)	110
NlaIV	GGNNCC	2 cut(s)	288, 481
NmuCI	GTSAC	2 cut(s)	187, 362
NspI	RCATGY	1 cut(s)	110
PaeR7I	CTCGAG	1 cut(s)	170
PciI	ACATGT	1 cut(s)	106
PctI	GAATGC	1 cut(s)	247
PmaCI	CACGTG	1 cut(s)	281
PmlI	CACGTG	1 cut(s)	281
Ppu21I	YACGTR	1 cut(s)	281
PscI	ACATGT	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	307
PspCI	CACGTG	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	2 cut(s)	288, 481
PspPI	GGNCC	1 cut(s)	92
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
RseI	CAYNNNNRTG	1 cut(s)	111
SaqAI	TTAA	3 cut(s)	75, 132, 458
Sau96I	GGNCC	1 cut(s)	92
ScrFI	CCNGG	1 cut(s)	309
SduI	GDGCHC	1 cut(s)	160
SetI	ASST	7 cut(s)	58, 81, 89, 283, 394, 455, 506
SfaNI	GCATC	1 cut(s)	136
Sfr274I	CTCGAG	1 cut(s)	170
SinI	GGWCC	1 cut(s)	92
SlaI	CTCGAG	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	111
SmlI	CTYRAG	2 cut(s)	131, 170
SmoI	CTYRAG	2 cut(s)	131, 170
Sse9I	AATT	2 cut(s)	71, 294
SsiI	CCGC	4 cut(s)	143, 378, 384, 396
SspMI	CTAG	2 cut(s)	84, 231
StyD4I	CCNGG	1 cut(s)	307
TaaI	ACNGT	3 cut(s)	162, 193, 274
TaiI	ACGT	1 cut(s)	283
TaqI	TCGA	3 cut(s)	171, 202, 487
TaqII	GACCGA	1 cut(s)	109
TasI	AATT	2 cut(s)	71, 294
TatI	WGTACW	1 cut(s)	103
Tru1I	TTAA	3 cut(s)	75, 132, 458
Tru9I	TTAA	3 cut(s)	75, 132, 458
TscAI	CASTG	2 cut(s)	65, 333
TseFI	GTSAC	2 cut(s)	187, 362
Tsp45I	GTSAC	2 cut(s)	187, 362
TspRI	CASTG	2 cut(s)	65, 333
Vha464I	CTTAAG	1 cut(s)	131
VneI	GTGCAC	1 cut(s)	156
VpaK11BI	GGWCC	1 cut(s)	92
XceI	RCATGY	1 cut(s)	110
XhoI	CTCGAG	1 cut(s)	170
XspI	CTAG	2 cut(s)	84, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.