Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007665

Physical Location & Seq

Genomic Coordinates Forward (+)

8006750 .. 8010017

Gene Structure 3268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00005970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGTGGTGCTTACTGCAGCAAGTGCAATTGCTAGCTCACCTATACTGCTAGCAGGGTCAGTGGGTCAACAGGGCAGACGAGCTGGGGCTTATGGGTCCGGTCCAAGAAGAGTTTGTGTGGATAGAAGTGTGGTACGCTCTGACATTAGACCAGTGGGGCTTGGCGCACGGTTATCACTTGAGAGAAGAAAACCATTATCACCAATCACGGGGTCTCGTCGAACGCAGTCTGCTTCTGTAATATGTGCTTCTTCTTTGAATGCCAGATGCGGTGCAGAGCAAACGCAAACTGTTACACGTGAGGCTCCAACAATTACACATCTTCCTGGTAAGAGCAGACACTTTAATGAAATTACAGGCAAGGAAAAATCTCCGCTGCTTGATGATGGCGGAACAGGATTCCCTCCCAGAGATGATGGTGGCGGTGGTGGCGGTGGGGGTGGTGGTGGAGGCAACTGGTCGGGAGGCTTCGCGTTTTTGGATTTCTTCTTTTCCTCAGCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

17.2

Weight (kDa)

10.44

Isoelectric Point (pI)

54.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30475 AT1G30475 AT1G30475 AT1G30475 AT1G56200 AT1G56200
fragaria_vesca	FvH4_3g42270 FvH4_3g42270 FvH4_3g42270 FvH4_3g42270 FvH4_3g42270
malus_domestica	MD03G1035300.v1.1 MD11G1037000.v1.1
prunus_persica	Prupe.6G028300_v2.0.a1 Prupe.6G028300_v2.0.a1
pyrus_communis	pycom03g02750 pycom11g03070
rosa_chinensis	RchiOBHm_Chr5g0075591
rosa_laevigata	RLG00000036583
rosa_multiflora	Rmu_sc0001811.1_g000004
rosa_roxburghii	Rroxscaffold_1G00005970
rosa_rugosa	Rorug05G0441500
rosa_samantha	Rh5BG518900
rosa_wichuraiana	Rw5G046180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	473
AciI	CCGC	5 cut(s)	270, 374, 390, 423, 432
AcvI	CACGTG	1 cut(s)	299
AfaI	GTAC	1 cut(s)	135
AfiI	CCNNNNNNNGG	1 cut(s)	209
AflIII	ACRYGT	1 cut(s)	296
AgsI	TTSAA	1 cut(s)	259
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	3 cut(s)	36, 83, 500
AluI	AGCT	3 cut(s)	36, 83, 500
Alw26I	GTCTC	1 cut(s)	219
ApeKI	GCWGC	2 cut(s)	17, 376
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	2 cut(s)	96, 101
AsuHPI	GGTGA	2 cut(s)	30, 192
AsuNHI	GCTAGC	2 cut(s)	32, 49
AvaII	GGWCC	2 cut(s)	96, 101
BbrPI	CACGTG	1 cut(s)	299
BbvCI	CCTCAGC	1 cut(s)	496
BbvI	GCAGC	2 cut(s)	29, 363
BccI	CCATC	2 cut(s)	380, 410
BciT130I	CCWGG	1 cut(s)	327
BcoDI	GTCTC	1 cut(s)	219
BfaI	CTAG	2 cut(s)	33, 50
BfmI	CTRYAG	1 cut(s)	15
BisI	GCNGC	2 cut(s)	18, 377
BlsI	GCNGC	2 cut(s)	19, 378
Bme1390I	CCNGG	1 cut(s)	327
Bme18I	GGWCC	2 cut(s)	96, 101
BmgT120I	GGNCC	2 cut(s)	96, 101
BmiI	GGNNCC	2 cut(s)	97, 306
BmrFI	CCNGG	1 cut(s)	327
BmsI	GCATC	1 cut(s)	257
BmtI	GCTAGC	2 cut(s)	36, 53
Bpu10I	CCTNAGC	1 cut(s)	496
BpuEI	CTTGAG	1 cut(s)	200
BsaAI	YACGTR	1 cut(s)	299
BsaI	GGTCTC	1 cut(s)	219
BsaWI	WCCGGW	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse1I	ACTGG	2 cut(s)	152, 461
BseBI	CCWGG	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseNI	ACTGG	2 cut(s)	152, 461
BseXI	GCAGC	2 cut(s)	29, 363
BseYI	CCCAGC	1 cut(s)	83
BsgI	GTGCAG	1 cut(s)	294
Bsh1236I	CGCG	1 cut(s)	473
BsiSI	CCGG	1 cut(s)	99
BslI	CCNNNNNNNGG	1 cut(s)	209
BsmAI	GTCTC	1 cut(s)	219
BsmI	GAATGC	1 cut(s)	265
Bso31I	GGTCTC	1 cut(s)	219
BspACI	CCGC	5 cut(s)	270, 374, 390, 423, 432
BspFNI	CGCG	1 cut(s)	473
BspLI	GGNNCC	2 cut(s)	97, 306
BspMAI	CTGCAG	1 cut(s)	19
BspOI	GCTAGC	2 cut(s)	36, 53
BspTNI	GGTCTC	1 cut(s)	219
BsrI	ACTGG	2 cut(s)	152, 461
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	2 cut(s)	171, 292
Bst6I	CTCTTC	1 cut(s)	103
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstBAI	YACGTR	1 cut(s)	299
BstC8I	GCNNGC	2 cut(s)	34, 51
BstDEI	CTNAG	1 cut(s)	496
BstFNI	CGCG	1 cut(s)	473
BstHHI	GCGC	1 cut(s)	167
BstMAI	GTCTC	1 cut(s)	219
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 429
BstNI	CCWGG	1 cut(s)	327
BstSCI	CCNGG	1 cut(s)	325
BstSFI	CTRYAG	1 cut(s)	15
BstUI	CGCG	1 cut(s)	473
BstV1I	GCAGC	2 cut(s)	29, 363
BtsIMutI	CAGTG	2 cut(s)	66, 159
Cac8I	GCNNGC	2 cut(s)	34, 51
CfoI	GCGC	1 cut(s)	167
Cfr13I	GGNCC	2 cut(s)	96, 101
Csp6I	GTAC	1 cut(s)	134
CviJI	RGCY	7 cut(s)	36, 83, 89, 160, 305, 468, 500
CviKI_1	RGCY	7 cut(s)	36, 83, 89, 160, 305, 468, 500
CviQI	GTAC	1 cut(s)	134
DdeI	CTNAG	1 cut(s)	496
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
EciI	GGCGGA	1 cut(s)	405
Eco31I	GGTCTC	1 cut(s)	219
Eco47I	GGWCC	2 cut(s)	96, 101
Eco72I	CACGTG	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	325
FaiI	YATR	3 cut(s)	44, 93, 244
Fnu4HI	GCNGC	2 cut(s)	18, 377
Fsp4HI	GCNGC	2 cut(s)	18, 377
FspBI	CTAG	2 cut(s)	33, 50
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	2 cut(s)	18, 377
GsaI	CCCAGC	1 cut(s)	87
HapII	CCGG	1 cut(s)	99
HhaI	GCGC	1 cut(s)	167
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HincII	GTYRAC	1 cut(s)	68
HindII	GTYRAC	1 cut(s)	68
HinfI	GANTC	1 cut(s)	399
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	2 cut(s)	30, 192
Hpy166II	GTNNAC	1 cut(s)	68
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	1 cut(s)	462
Hpy8I	GTNNAC	1 cut(s)	68
Hpy99I	CGWCG	1 cut(s)	222
HpyCH4III	ACNGT	2 cut(s)	171, 292
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	3 cut(s)	17, 26, 275
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 429
HpyF3I	CTNAG	1 cut(s)	496
HpySE526I	ACGT	1 cut(s)	298
HspAI	GCGC	1 cut(s)	165
LmnI	GCTCC	1 cut(s)	310
Lsp1109I	GCAGC	2 cut(s)	29, 363
LweI	GCATC	1 cut(s)	257
MaeI	CTAG	2 cut(s)	33, 50
MaeII	ACGT	1 cut(s)	298
MaeIII	GTNAC	1 cut(s)	292
MboII	GAAGA	5 cut(s)	120, 198, 243, 314, 478
MfeI	CAATTG	1 cut(s)	27
MluCI	AATT	3 cut(s)	27, 312, 351
MmeI	TCCRAC	1 cut(s)	332
MnlI	CCTC	5 cut(s)	295, 414, 443, 458, 505
MseI	TTAA	1 cut(s)	345
MslI	CAYNNNNRTG	1 cut(s)	345
MspA1I	CMGCKG	1 cut(s)	376
MspI	CCGG	1 cut(s)	99
MspR9I	CCNGG	1 cut(s)	327
MunI	CAATTG	1 cut(s)	27
Mva1269I	GAATGC	1 cut(s)	265
MvaI	CCWGG	1 cut(s)	327
MvnI	CGCG	1 cut(s)	473
MwoI	GCNNNNNNNGC	2 cut(s)	23, 429
NheI	GCTAGC	2 cut(s)	32, 49
NlaIV	GGNNCC	2 cut(s)	97, 306
PctI	GAATGC	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	399
PkrI	GCNGC	2 cut(s)	19, 378
PmaCI	CACGTG	1 cut(s)	299
PmlI	CACGTG	1 cut(s)	299
Ppu21I	YACGTR	1 cut(s)	299
Psp6I	CCWGG	1 cut(s)	325
PspCI	CACGTG	1 cut(s)	299
PspFI	CCCAGC	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	2 cut(s)	97, 306
PspPI	GGNCC	2 cut(s)	96, 101
PstI	CTGCAG	1 cut(s)	19
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
RseI	CAYNNNNRTG	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	2 cut(s)	18, 377
Sau96I	GGNCC	2 cut(s)	96, 101
ScrFI	CCNGG	1 cut(s)	327
SetI	ASST	5 cut(s)	38, 43, 85, 301, 502
SfaNI	GCATC	1 cut(s)	257
SfcI	CTRYAG	1 cut(s)	15
SinI	GGWCC	2 cut(s)	96, 101
SmiMI	CAYNNNNRTG	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	3 cut(s)	27, 312, 351
SsiI	CCGC	5 cut(s)	270, 374, 390, 423, 432
SspMI	CTAG	2 cut(s)	33, 50
StyD4I	CCNGG	1 cut(s)	325
TaaI	ACNGT	2 cut(s)	171, 292
TaiI	ACGT	1 cut(s)	301
TaqI	TCGA	1 cut(s)	220
TasI	AATT	3 cut(s)	27, 312, 351
TfiI	GAWTC	1 cut(s)	399
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TscAI	CASTG	2 cut(s)	66, 159
TseI	GCWGC	2 cut(s)	17, 376
TspDTI	ATGAA	1 cut(s)	363
TspRI	CASTG	2 cut(s)	66, 159
VpaK11BI	GGWCC	2 cut(s)	96, 101
XspI	CTAG	2 cut(s)	33, 50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.