Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003660

Physical Location & Seq

Genomic Coordinates Reverse (-)

21064223 .. 21065875

Gene Structure 1653 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G56260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGCTAAATCACAAATTGAACCTGGTGTTCCCATTACTCTACAAGAGCTTTATCCTTCTTCTCTGTTTTACAAAGAAGGTGTTTCACTTAGAGTTACAGCTATGTTAAGAGGATATTCAGTTGAAACAGCTATAGGTGTTATTGAAGATGGAGGCAGAAGTCTCAAAATCAATACTCAGAACATAAGAGATGTTAGTTTCAGGGTTGGCTCTATTTATCAGTTTATTGGAGAGCTTCACATTGAACAACCCAATAATGAGGCGATCTTGCAGGCTCGAACAGGAAGAAATGTGGACGGGATCGATATGAACCTCTACCGGAAAACAATCGAACTCCTAAGGCAGTTTCTAAAAGAAGAAGACAACAGCAATATGGTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0000781 GO:0003674 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006139 GO:0006259 GO:0006457 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010521 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0030234 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0042592 GO:0043086 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044092 GO:0044183 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045934 GO:0046483 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051276 GO:0051338 GO:0051348 GO:0051972 GO:0051974 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098687 GO:0098727 GO:0098772 GO:1901360 GO:2000112 GO:2000113 GO:2000278 GO:2000279

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ten1_2

Protein Analysis

127

Amino Acids

14.38

Weight (kDa)

5.25

Isoelectric Point (pI)

59.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ten1_2	PF15490	6 - 119	1.6e-35	Telomere-capping, CST complex subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56260 AT1G56260
fragaria_vesca	FvH4_6g06960 FvH4_6g06960 FvH4_6g06960
malus_domestica	MD04G1197300.v1.1 MD12G1210100.v1.1
prunus_persica	Prupe.2G221300_v2.0.a1 Prupe.2G221300_v2.0.a1 Prupe.2G221300_v2.0.a1 Prupe.2G221300_v2.0.a1 Prupe.3G209800_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1
pyrus_communis	pycom04g17440 pycom12g19750
rosa_chinensis	RchiOBHm_Chr3g0456501
rosa_laevigata	RLG00000025300
rosa_multiflora	Rmu_sc0002607.1_g000009 Rmu_sc0031879.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422690
rosa_rugosa	Rorug03G0013400 Rorug03G0013400
rosa_samantha	Rh3AG073900 Rh3BG075800 Rh3CG075300 Rh3DG077500
rosa_wichuraiana	Rw3G006340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	308
AgsI	TTSAA	4 cut(s)	20, 125, 146, 245
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	4 cut(s)	49, 101, 131, 235
AluI	AGCT	4 cut(s)	49, 101, 131, 235
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	1 cut(s)	308
AxyI	CCTNAGG	1 cut(s)	338
BbsI	GAAGAC	1 cut(s)	366
BccI	CCATC	1 cut(s)	143
BciT130I	CCWGG	1 cut(s)	24
BcoDI	GTCTC	1 cut(s)	167
BfmI	CTRYAG	1 cut(s)	132
Bme1390I	CCNGG	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	24
BpiI	GAAGAC	1 cut(s)	366
Bsa29I	ATCGAT	1 cut(s)	303
BsaWI	WCCGGW	1 cut(s)	318
Bse21I	CCTNAGG	1 cut(s)	338
BseBI	CCWGG	1 cut(s)	24
BseCI	ATCGAT	1 cut(s)	303
BseMII	CTCAG	1 cut(s)	191
BshVI	ATCGAT	1 cut(s)	303
BsiSI	CCGG	1 cut(s)	319
BsmAI	GTCTC	1 cut(s)	167
Bsp143I	GATC	2 cut(s)	264, 300
BspCNI	CTCAG	1 cut(s)	190
BspDI	ATCGAT	1 cut(s)	303
BspPI	GGATC	1 cut(s)	308
BssMI	GATC	2 cut(s)	264, 300
Bst2UI	CCWGG	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	3 cut(s)	89, 177, 338
BstKTI	GATC	2 cut(s)	267, 303
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	2 cut(s)	264, 300
BstNI	CCWGG	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	22
BstSFI	CTRYAG	1 cut(s)	132
BstV2I	GAAGAC	1 cut(s)	366
Bsu15I	ATCGAT	1 cut(s)	303
Bsu36I	CCTNAGG	1 cut(s)	338
BsuTUI	ATCGAT	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	273
ClaI	ATCGAT	1 cut(s)	303
CsiI	ACCWGGT	1 cut(s)	22
CviJI	RGCY	7 cut(s)	5, 49, 101, 131, 210, 235, 275
CviKI_1	RGCY	7 cut(s)	5, 49, 101, 131, 210, 235, 275
DdeI	CTNAG	3 cut(s)	89, 177, 338
DpnI	GATC	2 cut(s)	266, 302
DpnII	GATC	2 cut(s)	264, 300
Eco81I	CCTNAGG	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	22
FaiI	YATR	5 cut(s)	104, 134, 185, 308, 374
HapII	CCGG	1 cut(s)	319
HpaII	CCGG	1 cut(s)	319
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	1 cut(s)	180
Hpy8I	GTNNAC	1 cut(s)	295
HpyAV	CCTTC	2 cut(s)	66, 71
HpyCH4V	TGCA	1 cut(s)	271
HpyF3I	CTNAG	3 cut(s)	89, 177, 338
Kzo9I	GATC	2 cut(s)	264, 300
LpnPI	CCDG	6 cut(s)	9, 36, 187, 257, 267, 332
MabI	ACCWGGT	1 cut(s)	22
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	2 cut(s)	266, 302
MboI	GATC	2 cut(s)	264, 300
MboII	GAAGA	5 cut(s)	51, 158, 297, 368, 371
MluCI	AATT	1 cut(s)	15
MnlI	CCTC	4 cut(s)	104, 146, 253, 323
MseI	TTAA	1 cut(s)	107
MspI	CCGG	1 cut(s)	319
MspR9I	CCNGG	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	24
NdeII	GATC	2 cut(s)	264, 300
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
SaqAI	TTAA	1 cut(s)	107
Sau3AI	GATC	2 cut(s)	264, 300
ScrFI	CCNGG	1 cut(s)	24
SetI	ASST	8 cut(s)	25, 51, 82, 103, 133, 139, 237, 315
SexAI	ACCWGGT	1 cut(s)	22
SfcI	CTRYAG	1 cut(s)	132
Sse9I	AATT	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	22
TaqI	TCGA	3 cut(s)	277, 303, 330
TasI	AATT	1 cut(s)	15
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TspDTI	ATGAA	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.