Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0003660

Physical Location & Seq

Genomic Coordinates Forward (+)

6021558 .. 6024791

Gene Structure 3234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG077500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGCATCGTCTCCAATGGAATCTGGGGCATTGGTTTTATTGCAAGACCTACATCCATTTTCACCATACTTTAAGCAAGGGGCTTCACTAAGAGTAACCGGAAAGTTACAAGAGTATTCTGTTGAGACAGCTATTGCCACAGTAGTTGATGGAAATGACAGCTTAAAGATCGACACCAAACTCCTCAGAGAGCTTAACATTCGGGTTGGATCCATGTACCAGTTCATCGGCGAACTGCATATTGAACCCAATAATGAGGTAAGCGGTATACAAAAATCCAGTTACAAGTTACAACAAATGAAATGGTATAAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0000781 GO:0003674 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006139 GO:0006259 GO:0006457 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010521 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0030234 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0042592 GO:0043086 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044092 GO:0044183 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045934 GO:0046483 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051276 GO:0051338 GO:0051348 GO:0051972 GO:0051974 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098687 GO:0098727 GO:0098772 GO:1901360 GO:2000112 GO:2000113 GO:2000278 GO:2000279

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ten1_2

Protein Analysis

105

Amino Acids

11.82

Weight (kDa)

6.72

Isoelectric Point (pI)

47.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ten1_2	PF15490	6 - 86	5e-19	Telomere-capping, CST complex subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0003660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56260 AT1G56260
fragaria_vesca	FvH4_6g06960 FvH4_6g06960 FvH4_6g06960
malus_domestica	MD04G1197300.v1.1 MD12G1210100.v1.1
prunus_persica	Prupe.2G221300_v2.0.a1 Prupe.2G221300_v2.0.a1 Prupe.2G221300_v2.0.a1 Prupe.2G221300_v2.0.a1 Prupe.3G209800_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1
pyrus_communis	pycom04g17440 pycom12g19750
rosa_chinensis	RchiOBHm_Chr3g0456501
rosa_laevigata	RLG00000025300
rosa_multiflora	Rmu_sc0002607.1_g000009 Rmu_sc0031879.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422690
rosa_rugosa	Rorug03G0013400 Rorug03G0013400
rosa_samantha	Rh3AG073900 Rh3BG075800 Rh3CG075300 Rh3DG077500
rosa_wichuraiana	Rw3G006340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	268
AciI	CCGC	1 cut(s)	264
AclWI	GGATC	2 cut(s)	204, 217
AfaI	GTAC	1 cut(s)	218
AgsI	TTSAA	1 cut(s)	245
AluBI	AGCT	4 cut(s)	131, 162, 193, 313
AluI	AGCT	4 cut(s)	131, 162, 193, 313
Alw26I	GTCTC	2 cut(s)	15, 119
AlwI	GGATC	2 cut(s)	204, 217
AsuHPI	GGTGA	1 cut(s)	54
BamHI	GGATCC	1 cut(s)	209
BccI	CCATC	1 cut(s)	143
BcoDI	GTCTC	2 cut(s)	15, 119
BfaI	CTAG	1 cut(s)	316
BmiI	GGNNCC	1 cut(s)	211
BmsI	GCATC	1 cut(s)	14
BsaWI	WCCGGW	1 cut(s)	98
Bse1I	ACTGG	2 cut(s)	220, 279
BseGI	GGATG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	199
BseNI	ACTGG	2 cut(s)	220, 279
BseRI	GAGGAG	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	99
BsmAI	GTCTC	2 cut(s)	15, 119
BsmBI	CGTCTC	1 cut(s)	15
Bsp143I	GATC	2 cut(s)	168, 209
BspACI	CCGC	1 cut(s)	264
BspCNI	CTCAG	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	211
BspPI	GGATC	2 cut(s)	204, 217
BsrI	ACTGG	2 cut(s)	220, 279
BssMI	GATC	2 cut(s)	168, 209
BssNAI	GTATAC	1 cut(s)	269
Bst1107I	GTATAC	1 cut(s)	269
Bst4CI	ACNGT	1 cut(s)	142
BstDEI	CTNAG	2 cut(s)	89, 185
BstF5I	GGATG	1 cut(s)	52
BstKTI	GATC	2 cut(s)	171, 212
BstMAI	GTCTC	2 cut(s)	15, 119
BstMBI	GATC	2 cut(s)	168, 209
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
BstZ17I	GTATAC	1 cut(s)	269
BtsCI	GGATG	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	217
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	5 cut(s)	83, 131, 162, 193, 313
CviKI_1	RGCY	5 cut(s)	83, 131, 162, 193, 313
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	2 cut(s)	89, 185
DpnI	GATC	2 cut(s)	170, 211
DpnII	GATC	2 cut(s)	168, 209
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	1 cut(s)	217
FaiI	YATR	5 cut(s)	67, 215, 240, 269, 309
FatI	CATG	1 cut(s)	213
FblI	GTMKAC	1 cut(s)	268
FokI	GGATG	1 cut(s)	39
FspBI	CTAG	1 cut(s)	316
HapII	CCGG	1 cut(s)	99
Hin1II	CATG	1 cut(s)	217
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	1 cut(s)	54
Hpy166II	GTNNAC	1 cut(s)	269
Hpy188I	TCNGA	1 cut(s)	188
Hpy8I	GTNNAC	1 cut(s)	269
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4V	TGCA	2 cut(s)	43, 238
HpyF3I	CTNAG	2 cut(s)	89, 185
Hsp92II	CATG	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	168, 209
LpnPI	CCDG	4 cut(s)	9, 112, 233, 292
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	316
MaeIII	GTNAC	4 cut(s)	94, 105, 281, 288
MalI	GATC	2 cut(s)	170, 211
MboI	GATC	2 cut(s)	168, 209
MflI	RGATCY	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	2 cut(s)	194, 250
MseI	TTAA	3 cut(s)	72, 164, 195
MspI	CCGG	1 cut(s)	99
NdeII	GATC	2 cut(s)	168, 209
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	20
PspN4I	GGNNCC	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	209
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SaqAI	TTAA	3 cut(s)	72, 164, 195
Sau3AI	GATC	2 cut(s)	168, 209
SetI	ASST	6 cut(s)	51, 133, 164, 195, 261, 315
SfaNI	GCATC	1 cut(s)	14
SsiI	CCGC	1 cut(s)	264
SspMI	CTAG	1 cut(s)	316
TaaI	ACNGT	1 cut(s)	142
TaqI	TCGA	1 cut(s)	171
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	3 cut(s)	72, 164, 195
Tru9I	TTAA	3 cut(s)	72, 164, 195
TspDTI	ATGAA	2 cut(s)	214, 314
XmiI	GTMKAC	1 cut(s)	268
XspI	CTAG	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.