Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003660

Physical Location & Seq

Genomic Coordinates Reverse (-)

28224227 .. 28228058

Gene Structure 3832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G317700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCATCATCTGAAATAAAATCTGGGGCATTGGTTTCATTGCAAGACCTACATCCATCTTCCCCTTATTTCAAGCAAGGGGCTTCGTTGAGACTAACTGGAAAGTTACAAGAGTGTTCTGTAGAGACAGCCATTGCCACAATTGTTGATGGAAGTGACAGCTTAAAAATCAACACCCAACACCTCAGGGACCTTAGCTTTCGAGTCGGATCCATCTACCAGTTCATCGGCGAGCTGCTTATTCAACCCGATAATGAGGCAGTCTTGCAGGCACGTGTGGGTAGGAATGTTGATGGCATTGATCTCAATCTCTATTATCAATCTCTGCAATTGTTGAGACAATTTCAGGCTGATCATTTGAAGACCAAATTACCATCTACCCCCAACCCATCAAACAATGCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0000781 GO:0003674 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006139 GO:0006259 GO:0006457 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010521 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0030234 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0042592 GO:0043086 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044092 GO:0044183 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045934 GO:0046483 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051276 GO:0051338 GO:0051348 GO:0051972 GO:0051974 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098687 GO:0098727 GO:0098772 GO:1901360 GO:2000112 GO:2000113 GO:2000278 GO:2000279

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ten1_2

Protein Analysis

136

Amino Acids

14.85

Weight (kDa)

6.82

Isoelectric Point (pI)

40.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56260 AT1G56260
fragaria_vesca	FvH4_6g06960 FvH4_6g06960 FvH4_6g06960
malus_domestica	MD04G1197300.v1.1 MD12G1210100.v1.1
prunus_persica	Prupe.2G221300_v2.0.a1 Prupe.2G221300_v2.0.a1 Prupe.2G221300_v2.0.a1 Prupe.2G221300_v2.0.a1 Prupe.3G209800_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1
pyrus_communis	pycom04g17440 pycom12g19750
rosa_chinensis	RchiOBHm_Chr3g0456501
rosa_laevigata	RLG00000025300
rosa_multiflora	Rmu_sc0002607.1_g000009 Rmu_sc0031879.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422690
rosa_rugosa	Rorug03G0013400 Rorug03G0013400
rosa_samantha	Rh3AG073900 Rh3BG075800 Rh3CG075300 Rh3DG077500
rosa_wichuraiana	Rw3G006340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	204, 217
AcvI	CACGTG	1 cut(s)	275
AflIII	ACRYGT	1 cut(s)	274
AgsI	TTSAA	3 cut(s)	73, 245, 361
AluBI	AGCT	3 cut(s)	162, 198, 235
AluI	AGCT	3 cut(s)	162, 198, 235
Alw26I	GTCTC	3 cut(s)	85, 119, 331
AlwI	GGATC	2 cut(s)	204, 217
ApeKI	GCWGC	1 cut(s)	235
AspS9I	GGNCC	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	190
AxyI	CCTNAGG	1 cut(s)	185
BamHI	GGATCC	1 cut(s)	209
BbrPI	CACGTG	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	368
BbvI	GCAGC	1 cut(s)	222
BccI	CCATC	6 cut(s)	64, 143, 221, 287, 382, 397
BclI	TGATCA	1 cut(s)	352
BcoDI	GTCTC	3 cut(s)	85, 119, 331
BfmI	CTRYAG	1 cut(s)	120
BisI	GCNGC	1 cut(s)	236
BlsI	GCNGC	1 cut(s)	237
Bme18I	GGWCC	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	2 cut(s)	191, 211
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	368
Bpu10I	CCTNAGC	1 cut(s)	194
BsaAI	YACGTR	1 cut(s)	275
BsaBI	GATNNNNATC	1 cut(s)	306
Bse1I	ACTGG	2 cut(s)	103, 220
Bse21I	CCTNAGG	1 cut(s)	185
Bse3DI	GCAATG	2 cut(s)	38, 132
Bse8I	GATNNNNATC	1 cut(s)	306
BseGI	GGATG	1 cut(s)	52
BseJI	GATNNNNATC	1 cut(s)	306
BseMI	GCAATG	2 cut(s)	38, 132
BseMII	CTCAG	1 cut(s)	199
BseNI	ACTGG	2 cut(s)	103, 220
BseXI	GCAGC	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	203
BsmAI	GTCTC	3 cut(s)	85, 119, 331
BsmFI	GGGAC	1 cut(s)	203
Bsp143I	GATC	3 cut(s)	209, 301, 352
BspCNI	CTCAG	1 cut(s)	198
BspLI	GGNNCC	2 cut(s)	191, 211
BspPI	GGATC	2 cut(s)	204, 217
BsrDI	GCAATG	2 cut(s)	38, 132
BsrI	ACTGG	2 cut(s)	103, 220
BssMI	GATC	3 cut(s)	209, 301, 352
BstBAI	YACGTR	1 cut(s)	275
BstC8I	GCNNGC	2 cut(s)	233, 270
BstDEI	CTNAG	2 cut(s)	185, 194
BstF5I	GGATG	1 cut(s)	52
BstKTI	GATC	3 cut(s)	212, 304, 355
BstMAI	GTCTC	3 cut(s)	85, 119, 331
BstMBI	GATC	3 cut(s)	209, 301, 352
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	222
BstV2I	GAAGAC	1 cut(s)	368
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
Bsu36I	CCTNAGG	1 cut(s)	185
BtsCI	GGATG	1 cut(s)	52
Cac8I	GCNNGC	2 cut(s)	233, 270
Cfr13I	GGNCC	1 cut(s)	190
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviJI	RGCY	6 cut(s)	83, 131, 162, 198, 235, 350
CviKI_1	RGCY	6 cut(s)	83, 131, 162, 198, 235, 350
DdeI	CTNAG	2 cut(s)	185, 194
DpnI	GATC	3 cut(s)	211, 303, 354
DpnII	GATC	3 cut(s)	209, 301, 352
Eco47I	GGWCC	1 cut(s)	190
Eco72I	CACGTG	1 cut(s)	275
Eco81I	CCTNAGG	1 cut(s)	185
EcoO109I	RGGNCCY	1 cut(s)	190
FaqI	GGGAC	1 cut(s)	203
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	1 cut(s)	236
FokI	GGATG	1 cut(s)	39
Fsp4HI	GCNGC	1 cut(s)	236
GluI	GCNGC	1 cut(s)	236
HinfI	GANTC	1 cut(s)	204
Hpy188I	TCNGA	2 cut(s)	13, 209
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	4 cut(s)	43, 268, 328, 401
HpyF3I	CTNAG	2 cut(s)	185, 194
HpySE526I	ACGT	1 cut(s)	274
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	209, 301, 352
LpnPI	CCDG	6 cut(s)	9, 84, 172, 233, 254, 332
Lsp1109I	GCAGC	1 cut(s)	222
LweI	GCATC	1 cut(s)	14
MaeII	ACGT	1 cut(s)	274
MaeIII	GTNAC	2 cut(s)	105, 155
MalI	GATC	3 cut(s)	211, 303, 354
MboI	GATC	3 cut(s)	209, 301, 352
MboII	GAAGA	2 cut(s)	51, 373
MfeI	CAATTG	2 cut(s)	141, 329
MflI	RGATCY	1 cut(s)	209
MluCI	AATT	4 cut(s)	141, 329, 341, 368
MlyI	GAGTC	1 cut(s)	213
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	2 cut(s)	194, 250
MseI	TTAA	1 cut(s)	164
MunI	CAATTG	2 cut(s)	141, 329
NdeII	GATC	3 cut(s)	209, 301, 352
NlaIV	GGNNCC	2 cut(s)	191, 211
NmuCI	GTSAC	1 cut(s)	155
PkrI	GCNGC	1 cut(s)	237
PleI	GAGTC	1 cut(s)	212
PmaCI	CACGTG	1 cut(s)	275
PmlI	CACGTG	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	212
Ppu21I	YACGTR	1 cut(s)	275
PpuMI	RGGWCCY	1 cut(s)	190
Psp5II	RGGWCCY	1 cut(s)	190
PspCI	CACGTG	1 cut(s)	275
PspN4I	GGNNCC	2 cut(s)	191, 211
PspPI	GGNCC	1 cut(s)	190
PspPPI	RGGWCCY	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	164
SatI	GCNGC	1 cut(s)	236
Sau3AI	GATC	3 cut(s)	209, 301, 352
Sau96I	GGNCC	1 cut(s)	190
SchI	GAGTC	1 cut(s)	213
SetI	ASST	7 cut(s)	51, 164, 186, 195, 200, 237, 277
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	120
SinI	GGWCC	1 cut(s)	190
Sse9I	AATT	4 cut(s)	141, 329, 341, 368
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	1 cut(s)	202
TasI	AATT	4 cut(s)	141, 329, 341, 368
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	1 cut(s)	235
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	2 cut(s)	27, 214
VpaK11BI	GGWCC	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.