Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0003660

Physical Location & Seq

Genomic Coordinates Forward (+)

5998573 .. 6000755

Gene Structure 2183 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G006340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCATCGTCTCCAATGGAATCTGGGGCATTGGTTTTATTGCAAGACCTACATCCATTTTCACCATACTTTAGGCAAGGGGCTTCACTAAGAGTAACTGGAAAGTTACAAGAGTATTCTGTTGAGACAGCTATTGCCACAGTAGTTGATGGAAATGACAGCTTAAAGATCAACACCAAACTCCTCAGAGAGCTTAACATTCGGGTTGGATCCATGTACCAGTTCATCGGCGAACTGCATATTGAACCCAATAATGAGGCAGTCTTGCAAGCACGTGTGGGTAGGAATGTTGATGGCATTGACCTCGAGCTCTATTATCAGTCTCTGCAATTGCTAAGACAATTTCAAGCCAATCATCTGAAGAACCCAACAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0000781 GO:0003674 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006139 GO:0006259 GO:0006457 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010521 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0030234 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0042592 GO:0043086 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044092 GO:0044183 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045934 GO:0046483 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051276 GO:0051338 GO:0051348 GO:0051972 GO:0051974 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098687 GO:0098727 GO:0098772 GO:1901360 GO:2000112 GO:2000113 GO:2000278 GO:2000279

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ten1_2

Protein Analysis

125

Amino Acids

13.99

Weight (kDa)

5.87

Isoelectric Point (pI)

49.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ten1_2	PF15490	6 - 118	2e-34	Telomere-capping, CST complex subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56260 AT1G56260
fragaria_vesca	FvH4_6g06960 FvH4_6g06960 FvH4_6g06960
malus_domestica	MD04G1197300.v1.1 MD12G1210100.v1.1
prunus_persica	Prupe.2G221300_v2.0.a1 Prupe.2G221300_v2.0.a1 Prupe.2G221300_v2.0.a1 Prupe.2G221300_v2.0.a1 Prupe.3G209800_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1
pyrus_communis	pycom04g17440 pycom12g19750
rosa_chinensis	RchiOBHm_Chr3g0456501
rosa_laevigata	RLG00000025300
rosa_multiflora	Rmu_sc0002607.1_g000009 Rmu_sc0031879.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422690
rosa_rugosa	Rorug03G0013400 Rorug03G0013400
rosa_samantha	Rh3AG073900 Rh3BG075800 Rh3CG075300 Rh3DG077500
rosa_wichuraiana	Rw3G006340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	204, 217
AcvI	CACGTG	1 cut(s)	275
AfaI	GTAC	1 cut(s)	218
AflIII	ACRYGT	1 cut(s)	274
AgsI	TTSAA	2 cut(s)	245, 347
AluBI	AGCT	5 cut(s)	131, 162, 193, 310, 374
AluI	AGCT	5 cut(s)	131, 162, 193, 310, 374
Alw21I	GWGCWC	1 cut(s)	312
Alw26I	GTCTC	3 cut(s)	15, 119, 327
AlwI	GGATC	2 cut(s)	204, 217
AlwNI	CAGNNNCTG	1 cut(s)	325
Ama87I	CYCGRG	1 cut(s)	305
AsuHPI	GGTGA	1 cut(s)	54
AvaI	CYCGRG	1 cut(s)	305
BamHI	GGATCC	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	312
BbrPI	CACGTG	1 cut(s)	275
Bbv12I	GWGCWC	1 cut(s)	312
BccI	CCATC	2 cut(s)	143, 287
BcgI	CGANNNNNNTGC	2 cut(s)	286, 320
BcoDI	GTCTC	3 cut(s)	15, 119, 327
BmeT110I	CYCGRG	1 cut(s)	305
BmiI	GGNNCC	1 cut(s)	211
BmsI	GCATC	1 cut(s)	14
BsaAI	YACGTR	1 cut(s)	275
Bse1I	ACTGG	2 cut(s)	103, 220
BseGI	GGATG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	199
BseNI	ACTGG	2 cut(s)	103, 220
BseRI	GAGGAG	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	312
BsiHKCI	CYCGRG	1 cut(s)	305
BsmAI	GTCTC	3 cut(s)	15, 119, 327
BsmBI	CGTCTC	1 cut(s)	15
BsoBI	CYCGRG	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp143I	GATC	2 cut(s)	168, 209
BspCNI	CTCAG	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	211
BspPI	GGATC	2 cut(s)	204, 217
BsrI	ACTGG	2 cut(s)	103, 220
BssMI	GATC	2 cut(s)	168, 209
Bst4CI	ACNGT	1 cut(s)	142
BstBAI	YACGTR	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	3 cut(s)	89, 185, 335
BstF5I	GGATG	1 cut(s)	52
BstKTI	GATC	2 cut(s)	171, 212
BstMAI	GTCTC	3 cut(s)	15, 119, 327
BstMBI	GATC	2 cut(s)	168, 209
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	52
Cac8I	GCNNGC	1 cut(s)	270
CaiI	CAGNNNCTG	1 cut(s)	325
Csp6I	GTAC	1 cut(s)	217
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	7 cut(s)	83, 131, 162, 193, 310, 350, 374
CviKI_1	RGCY	7 cut(s)	83, 131, 162, 193, 310, 350, 374
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	3 cut(s)	89, 185, 335
DpnI	GATC	2 cut(s)	170, 211
DpnII	GATC	2 cut(s)	168, 209
Ecl136II	GAGCTC	1 cut(s)	310
Eco24I	GRGCYC	1 cut(s)	312
Eco53kI	GAGCTC	1 cut(s)	310
Eco72I	CACGTG	1 cut(s)	275
Eco88I	CYCGRG	1 cut(s)	305
EcoICRI	GAGCTC	1 cut(s)	310
EcoT38I	GRGCYC	1 cut(s)	312
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	1 cut(s)	217
FaiI	YATR	3 cut(s)	67, 215, 240
FatI	CATG	1 cut(s)	213
FokI	GGATG	1 cut(s)	39
FriOI	GRGCYC	1 cut(s)	312
Hin1II	CATG	1 cut(s)	217
HinfI	GANTC	1 cut(s)	20
HphI	GGTGA	1 cut(s)	54
Hpy188I	TCNGA	2 cut(s)	188, 360
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	4 cut(s)	43, 238, 268, 328
HpyF3I	CTNAG	3 cut(s)	89, 185, 335
HpySE526I	ACGT	1 cut(s)	274
Hsp92II	CATG	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	168, 209
LpnPI	CCDG	3 cut(s)	9, 84, 233
LweI	GCATC	1 cut(s)	14
MaeII	ACGT	1 cut(s)	274
MaeIII	GTNAC	2 cut(s)	94, 105
MalI	GATC	2 cut(s)	170, 211
MboI	GATC	2 cut(s)	168, 209
MboII	GAAGA	1 cut(s)	373
MfeI	CAATTG	1 cut(s)	329
MflI	RGATCY	1 cut(s)	209
MhlI	GDGCHC	1 cut(s)	312
MluCI	AATT	2 cut(s)	329, 341
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	3 cut(s)	194, 250, 314
MseI	TTAA	3 cut(s)	164, 195, 376
MunI	CAATTG	1 cut(s)	329
NdeII	GATC	2 cut(s)	168, 209
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	1 cut(s)	211
PaeR7I	CTCGAG	1 cut(s)	305
PfeI	GAWTC	1 cut(s)	20
PmaCI	CACGTG	1 cut(s)	275
PmlI	CACGTG	1 cut(s)	275
Ppu21I	YACGTR	1 cut(s)	275
Psp124BI	GAGCTC	1 cut(s)	312
PspCI	CACGTG	1 cut(s)	275
PspN4I	GGNNCC	1 cut(s)	211
PspXI	VCTCGAGB	1 cut(s)	305
PstNI	CAGNNNCTG	1 cut(s)	325
PsuI	RGATCY	1 cut(s)	209
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SacI	GAGCTC	1 cut(s)	312
SaqAI	TTAA	3 cut(s)	164, 195, 376
Sau3AI	GATC	2 cut(s)	168, 209
SduI	GDGCHC	1 cut(s)	312
SetI	ASST	8 cut(s)	51, 133, 164, 195, 277, 306, 312, 376
SfaNI	GCATC	1 cut(s)	14
Sfr274I	CTCGAG	1 cut(s)	305
SlaI	CTCGAG	1 cut(s)	305
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	2 cut(s)	329, 341
SstI	GAGCTC	1 cut(s)	312
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	1 cut(s)	306
TasI	AATT	2 cut(s)	329, 341
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	3 cut(s)	164, 195, 376
Tru9I	TTAA	3 cut(s)	164, 195, 376
TspDTI	ATGAA	1 cut(s)	214
XhoI	CTCGAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.