Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0003660

Physical Location & Seq

Genomic Coordinates Reverse (-)

28538332 .. 28540178

Gene Structure 1847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1197300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCATCATCTGAGATAACATCGGGGGCATTGGTCACATTGCAAGATTTGCATCCATCTTCCCCATATTTCAAGCAAGGAGCATCGTTACGAGTAACCGGAAAGTTACACGATTACTCTGTAGAGACAGTCATTGCCACAATCGTCGATGGAAGTGAGAGGTTAAAAATCAACACGCAGCACCTCCGGGAGCTCAGCTTTCGAGTTGGATCCATCTACCAGTTCATCGGCGAGCTGCTTATTCAACCGGATAATGAGGCAGTGTTGCAGGCGCGTATGGGAAGGAATGTTGACGGCATTGACCTCAATCTATATCATCAGTCTCTGCAACTGTTAAGACAATTTCAGGCCGACCATTTGAAGAAGCCAGCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0000781 GO:0003674 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006139 GO:0006259 GO:0006457 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010521 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0030234 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0042592 GO:0043086 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044092 GO:0044183 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045934 GO:0046483 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051276 GO:0051338 GO:0051348 GO:0051972 GO:0051974 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098687 GO:0098727 GO:0098772 GO:1901360 GO:2000112 GO:2000113 GO:2000278 GO:2000279

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ten1_2

Protein Analysis

126

Amino Acids

13.96

Weight (kDa)

6.5

Isoelectric Point (pI)

32.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ten1_2	PF15490	7 - 118	2.8e-35	Telomere-capping, CST complex subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56260 AT1G56260
fragaria_vesca	FvH4_6g06960 FvH4_6g06960 FvH4_6g06960
malus_domestica	MD04G1197300.v1.1 MD12G1210100.v1.1
prunus_persica	Prupe.2G221300_v2.0.a1 Prupe.2G221300_v2.0.a1 Prupe.2G221300_v2.0.a1 Prupe.2G221300_v2.0.a1 Prupe.3G209800_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1
pyrus_communis	pycom04g17440 pycom12g19750
rosa_chinensis	RchiOBHm_Chr3g0456501
rosa_laevigata	RLG00000025300
rosa_multiflora	Rmu_sc0002607.1_g000009 Rmu_sc0031879.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422690
rosa_rugosa	Rorug03G0013400 Rorug03G0013400
rosa_samantha	Rh3AG073900 Rh3BG075800 Rh3CG075300 Rh3DG077500
rosa_wichuraiana	Rw3G006340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	274
AclWI	GGATC	2 cut(s)	204, 217
AgsI	TTSAA	3 cut(s)	73, 245, 361
AluBI	AGCT	3 cut(s)	193, 198, 235
AluI	AGCT	3 cut(s)	193, 198, 235
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	2 cut(s)	119, 327
AlwI	GGATC	2 cut(s)	204, 217
AlwNI	CAGNNNCTG	1 cut(s)	325
AoxI	GGCC	1 cut(s)	348
ApeKI	GCWGC	2 cut(s)	178, 235
AspLEI	GCGC	1 cut(s)	274
AsuC2I	CCSGG	1 cut(s)	188
BamHI	GGATCC	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	2 cut(s)	190, 222
BccI	CCATC	3 cut(s)	64, 143, 221
BceAI	ACGGC	1 cut(s)	310
BcnI	CCSGG	1 cut(s)	188
BcoDI	GTCTC	2 cut(s)	119, 327
BfmI	CTRYAG	1 cut(s)	120
BisI	GCNGC	2 cut(s)	179, 236
BlpI	GCTNAGC	1 cut(s)	194
BlsI	GCNGC	2 cut(s)	180, 237
Bme1390I	CCNGG	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	211
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	3 cut(s)	14, 61, 92
Bpu1102I	GCTNAGC	1 cut(s)	194
BpuMI	CCSGG	1 cut(s)	188
BsaBI	GATNNNNATC	1 cut(s)	51
BsaWI	WCCGGW	2 cut(s)	98, 247
Bse1I	ACTGG	1 cut(s)	220
Bse3DI	GCAATG	2 cut(s)	38, 132
Bse8I	GATNNNNATC	1 cut(s)	51
BseGI	GGATG	1 cut(s)	52
BseJI	GATNNNNATC	1 cut(s)	51
BseMI	GCAATG	2 cut(s)	38, 132
BseMII	CTCAG	1 cut(s)	208
BseNI	ACTGG	1 cut(s)	220
BseXI	GCAGC	2 cut(s)	190, 222
Bsh1236I	CGCG	1 cut(s)	274
BshFI	GGCC	1 cut(s)	350
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	3 cut(s)	99, 187, 248
BsmAI	GTCTC	2 cut(s)	119, 327
BsnI	GGCC	1 cut(s)	350
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	1 cut(s)	209
Bsp1720I	GCTNAGC	1 cut(s)	194
BspANI	GGCC	1 cut(s)	350
BspCNI	CTCAG	2 cut(s)	4, 207
BspFNI	CGCG	1 cut(s)	274
BspLI	GGNNCC	1 cut(s)	211
BspPI	GGATC	2 cut(s)	204, 217
BsrDI	GCAATG	2 cut(s)	38, 132
BsrI	ACTGG	1 cut(s)	220
BssMI	GATC	1 cut(s)	209
Bst4CI	ACNGT	2 cut(s)	130, 333
BstAPI	GCANNNNNTGC	1 cut(s)	49
BstC8I	GCNNGC	3 cut(s)	233, 270, 369
BstDEI	CTNAG	2 cut(s)	12, 194
BstF5I	GGATG	1 cut(s)	52
BstFNI	CGCG	1 cut(s)	274
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	1 cut(s)	212
BstMAI	GTCTC	2 cut(s)	119, 327
BstMBI	GATC	1 cut(s)	209
BstMWI	GCNNNNNNNGC	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	186
BstSFI	CTRYAG	1 cut(s)	120
BstUI	CGCG	1 cut(s)	274
BstV1I	GCAGC	2 cut(s)	190, 222
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
BsuRI	GGCC	1 cut(s)	350
BtsCI	GGATG	1 cut(s)	52
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	1 cut(s)	267
Cac8I	GCNNGC	3 cut(s)	233, 270, 369
CaiI	CAGNNNCTG	1 cut(s)	325
CfoI	GCGC	1 cut(s)	274
CviJI	RGCY	5 cut(s)	193, 198, 235, 350, 367
CviKI_1	RGCY	5 cut(s)	193, 198, 235, 350, 367
DdeI	CTNAG	2 cut(s)	12, 194
DpnI	GATC	1 cut(s)	211
DpnII	GATC	1 cut(s)	209
Ecl136II	GAGCTC	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	195
Eco53kI	GAGCTC	1 cut(s)	193
EcoICRI	GAGCTC	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	195
FaiI	YATR	3 cut(s)	67, 278, 313
Fnu4HI	GCNGC	2 cut(s)	179, 236
FokI	GGATG	1 cut(s)	39
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	2 cut(s)	179, 236
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	2 cut(s)	179, 236
HaeIII	GGCC	1 cut(s)	350
HapII	CCGG	3 cut(s)	99, 187, 248
HhaI	GCGC	1 cut(s)	274
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HpaII	CCGG	3 cut(s)	99, 187, 248
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	1 cut(s)	13
Hpy8I	GTNNAC	1 cut(s)	292
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	276
HpyCH4III	ACNGT	2 cut(s)	130, 333
HpyCH4V	TGCA	4 cut(s)	43, 52, 268, 328
HpyF10VI	GCNNNNNNNGC	1 cut(s)	49
HpyF3I	CTNAG	2 cut(s)	12, 194
HspAI	GCGC	1 cut(s)	272
Kzo9I	GATC	1 cut(s)	209
LmnI	GCTCC	2 cut(s)	80, 190
LpnPI	CCDG	6 cut(s)	112, 200, 233, 254, 261, 332
Lsp1109I	GCAGC	2 cut(s)	190, 222
LweI	GCATC	3 cut(s)	14, 61, 92
MaeIII	GTNAC	4 cut(s)	34, 87, 94, 105
MalI	GATC	1 cut(s)	211
MboI	GATC	1 cut(s)	209
MboII	GAAGA	2 cut(s)	51, 373
MflI	RGATCY	1 cut(s)	209
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	1 cut(s)	341
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	4 cut(s)	153, 194, 250, 314
MseI	TTAA	3 cut(s)	164, 335, 376
MspI	CCGG	3 cut(s)	99, 187, 248
MspR9I	CCNGG	1 cut(s)	188
MvnI	CGCG	1 cut(s)	274
MwoI	GCNNNNNNNGC	1 cut(s)	49
NciI	CCSGG	1 cut(s)	188
NdeII	GATC	1 cut(s)	209
NlaIV	GGNNCC	1 cut(s)	211
NmuCI	GTSAC	1 cut(s)	34
PfoI	TCCNGGA	1 cut(s)	186
PkrI	GCNGC	2 cut(s)	180, 237
Psp124BI	GAGCTC	1 cut(s)	195
PspN4I	GGNNCC	1 cut(s)	211
PstNI	CAGNNNCTG	1 cut(s)	325
PsuI	RGATCY	1 cut(s)	209
SacI	GAGCTC	1 cut(s)	195
SaqAI	TTAA	3 cut(s)	164, 335, 376
SatI	GCNGC	2 cut(s)	179, 236
Sau3AI	GATC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	6 cut(s)	164, 186, 195, 200, 237, 306
SfaNI	GCATC	3 cut(s)	14, 61, 92
SfcI	CTRYAG	1 cut(s)	120
Sse9I	AATT	1 cut(s)	341
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	186
TaaI	ACNGT	2 cut(s)	130, 333
TaqI	TCGA	2 cut(s)	147, 202
TasI	AATT	1 cut(s)	341
Tru1I	TTAA	3 cut(s)	164, 335, 376
Tru9I	TTAA	3 cut(s)	164, 335, 376
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	2 cut(s)	178, 235
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	214
TspRI	CASTG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.