Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003660

Physical Location & Seq

Genomic Coordinates Forward (+)

5947596 .. 5950854

Gene Structure 3259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG073900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCATCGTCTCCAATGGAATCTGGGGCATTGGTTTTATTGCAAGACCTACATCCATTTTCACCATACTTTAAGCAAGGGGCTTCACTAAGAGTAACCGGAAAGTTACAAGGGTATTCTGTTGAGACAGCTATTGCCACAGTAGTTGATGGAAATGACAGCTTAAAGATCGACACCAAACTCCTCAGAGAGCTTAACATTCGGGTTGGATCCATGTACCAGTTCATCGGCGAACTGCATATTGAACCCAATAATGAGGCAGTCTTGCAAGCACGTGTGGGTAGGAATGTTGATGGCATTGACCTCAAGCTCTATTATCAGTCTCTGCAATTGCTAAGACAATTTCAAGCCAATCATCTGAAGAACCCAACAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0000781 GO:0003674 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006139 GO:0006259 GO:0006457 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010521 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0030234 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0042592 GO:0043086 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044092 GO:0044183 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045934 GO:0046483 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051276 GO:0051338 GO:0051348 GO:0051972 GO:0051974 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098687 GO:0098727 GO:0098772 GO:1901360 GO:2000112 GO:2000113 GO:2000278 GO:2000279

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ten1_2

Protein Analysis

125

Amino Acids

13.89

Weight (kDa)

6.83

Isoelectric Point (pI)

44.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ten1_2	PF15490	6 - 118	2.2e-34	Telomere-capping, CST complex subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56260 AT1G56260
fragaria_vesca	FvH4_6g06960 FvH4_6g06960 FvH4_6g06960
malus_domestica	MD04G1197300.v1.1 MD12G1210100.v1.1
prunus_persica	Prupe.2G221300_v2.0.a1 Prupe.2G221300_v2.0.a1 Prupe.2G221300_v2.0.a1 Prupe.2G221300_v2.0.a1 Prupe.3G209800_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1
pyrus_communis	pycom04g17440 pycom12g19750
rosa_chinensis	RchiOBHm_Chr3g0456501
rosa_laevigata	RLG00000025300
rosa_multiflora	Rmu_sc0002607.1_g000009 Rmu_sc0031879.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422690
rosa_rugosa	Rorug03G0013400 Rorug03G0013400
rosa_samantha	Rh3AG073900 Rh3BG075800 Rh3CG075300 Rh3DG077500
rosa_wichuraiana	Rw3G006340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	204, 217
AcvI	CACGTG	1 cut(s)	275
AfaI	GTAC	1 cut(s)	218
AflIII	ACRYGT	1 cut(s)	274
AgsI	TTSAA	2 cut(s)	245, 347
AluBI	AGCT	5 cut(s)	131, 162, 193, 310, 374
AluI	AGCT	5 cut(s)	131, 162, 193, 310, 374
Alw26I	GTCTC	3 cut(s)	15, 119, 327
AlwI	GGATC	2 cut(s)	204, 217
AlwNI	CAGNNNCTG	1 cut(s)	325
AsuHPI	GGTGA	1 cut(s)	54
BamHI	GGATCC	1 cut(s)	209
BbrPI	CACGTG	1 cut(s)	275
BccI	CCATC	2 cut(s)	143, 287
BcoDI	GTCTC	3 cut(s)	15, 119, 327
BmiI	GGNNCC	1 cut(s)	211
BmsI	GCATC	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	290
BsaAI	YACGTR	1 cut(s)	275
BsaWI	WCCGGW	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	220
BseGI	GGATG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	199
BseNI	ACTGG	1 cut(s)	220
BseRI	GAGGAG	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	99
BsmAI	GTCTC	3 cut(s)	15, 119, 327
BsmBI	CGTCTC	1 cut(s)	15
Bsp143I	GATC	2 cut(s)	168, 209
BspCNI	CTCAG	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	211
BspPI	GGATC	2 cut(s)	204, 217
BsrI	ACTGG	1 cut(s)	220
BssMI	GATC	2 cut(s)	168, 209
Bst4CI	ACNGT	1 cut(s)	142
BstBAI	YACGTR	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	3 cut(s)	89, 185, 335
BstF5I	GGATG	1 cut(s)	52
BstKTI	GATC	2 cut(s)	171, 212
BstMAI	GTCTC	3 cut(s)	15, 119, 327
BstMBI	GATC	2 cut(s)	168, 209
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	52
Cac8I	GCNNGC	1 cut(s)	270
CaiI	CAGNNNCTG	1 cut(s)	325
Csp6I	GTAC	1 cut(s)	217
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	7 cut(s)	83, 131, 162, 193, 310, 350, 374
CviKI_1	RGCY	7 cut(s)	83, 131, 162, 193, 310, 350, 374
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	3 cut(s)	89, 185, 335
DpnI	GATC	2 cut(s)	170, 211
DpnII	GATC	2 cut(s)	168, 209
Eco72I	CACGTG	1 cut(s)	275
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	1 cut(s)	217
FaiI	YATR	3 cut(s)	67, 215, 240
FatI	CATG	1 cut(s)	213
FokI	GGATG	1 cut(s)	39
HapII	CCGG	1 cut(s)	99
Hin1II	CATG	1 cut(s)	217
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	1 cut(s)	54
Hpy188I	TCNGA	2 cut(s)	188, 360
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	4 cut(s)	43, 238, 268, 328
HpyF3I	CTNAG	3 cut(s)	89, 185, 335
HpySE526I	ACGT	1 cut(s)	274
Hsp92II	CATG	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	168, 209
LpnPI	CCDG	3 cut(s)	9, 112, 233
LweI	GCATC	1 cut(s)	14
MaeII	ACGT	1 cut(s)	274
MaeIII	GTNAC	2 cut(s)	94, 105
MalI	GATC	2 cut(s)	170, 211
MboI	GATC	2 cut(s)	168, 209
MboII	GAAGA	1 cut(s)	373
MfeI	CAATTG	1 cut(s)	329
MflI	RGATCY	1 cut(s)	209
MluCI	AATT	2 cut(s)	329, 341
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	3 cut(s)	194, 250, 314
MseI	TTAA	4 cut(s)	72, 164, 195, 376
MspI	CCGG	1 cut(s)	99
MunI	CAATTG	1 cut(s)	329
NdeII	GATC	2 cut(s)	168, 209
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	20
PmaCI	CACGTG	1 cut(s)	275
PmlI	CACGTG	1 cut(s)	275
Ppu21I	YACGTR	1 cut(s)	275
PspCI	CACGTG	1 cut(s)	275
PspN4I	GGNNCC	1 cut(s)	211
PstNI	CAGNNNCTG	1 cut(s)	325
PsuI	RGATCY	1 cut(s)	209
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SaqAI	TTAA	4 cut(s)	72, 164, 195, 376
Sau3AI	GATC	2 cut(s)	168, 209
SetI	ASST	8 cut(s)	51, 133, 164, 195, 277, 306, 312, 376
SfaNI	GCATC	1 cut(s)	14
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	2 cut(s)	329, 341
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	1 cut(s)	171
TasI	AATT	2 cut(s)	329, 341
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	4 cut(s)	72, 164, 195, 376
Tru9I	TTAA	4 cut(s)	72, 164, 195, 376
TspDTI	ATGAA	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.