Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003660

Physical Location & Seq

Genomic Coordinates Reverse (-)

43698827 .. 43700598

Gene Structure 1772 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025300

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGAATCTGGGGCATTGGTTTTATTGCAAGACCTACATCCATATTCACCATTCTTTAAGCAAGGGGCTTCACTAAGAGTAACTGGAAAGTTACAAGAGTATTCTGTTGAGACAGCTATTGCCACAGTAGTTGATGGAAATGACAGCTTAAAGATCGACACCAAACTCCTCAGAGAGCTTAACATTCGGGTTGGATCCATGTACCAGTTCATCGGCGAACTGCATATTGAACCCAATAATGAGGCAGTCTTGCAAGCACGTGTGGGTAGGAATGTTGATGGCATTGACCTCAAGCTCTATTATCAGTCTCTGCAATTGCTAAGACAATTTCAAGCCAATCATCTGAAGAACCCAACAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0000781 GO:0003674 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006139 GO:0006259 GO:0006457 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010521 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0030234 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0042592 GO:0043086 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044092 GO:0044183 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045934 GO:0046483 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051276 GO:0051338 GO:0051348 GO:0051972 GO:0051974 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098687 GO:0098727 GO:0098772 GO:1901360 GO:2000112 GO:2000113 GO:2000278 GO:2000279

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ten1_2

Protein Analysis

121

Amino Acids

13.49

Weight (kDa)

6.27

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ten1_2	PF15490	2 - 113	3.2e-35	Telomere-capping, CST complex subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0003660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56260 AT1G56260
fragaria_vesca	FvH4_6g06960 FvH4_6g06960 FvH4_6g06960
malus_domestica	MD04G1197300.v1.1 MD12G1210100.v1.1
prunus_persica	Prupe.2G221300_v2.0.a1 Prupe.2G221300_v2.0.a1 Prupe.2G221300_v2.0.a1 Prupe.2G221300_v2.0.a1 Prupe.3G209800_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1
pyrus_communis	pycom04g17440 pycom12g19750
rosa_chinensis	RchiOBHm_Chr3g0456501
rosa_laevigata	RLG00000025300
rosa_multiflora	Rmu_sc0002607.1_g000009 Rmu_sc0031879.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422690
rosa_rugosa	Rorug03G0013400 Rorug03G0013400
rosa_samantha	Rh3AG073900 Rh3BG075800 Rh3CG075300 Rh3DG077500
rosa_wichuraiana	Rw3G006340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	189, 202
AcvI	CACGTG	1 cut(s)	260
AfaI	GTAC	1 cut(s)	203
AflIII	ACRYGT	1 cut(s)	259
AgsI	TTSAA	2 cut(s)	230, 332
AluBI	AGCT	5 cut(s)	116, 147, 178, 295, 359
AluI	AGCT	5 cut(s)	116, 147, 178, 295, 359
Alw26I	GTCTC	2 cut(s)	104, 312
AlwI	GGATC	2 cut(s)	189, 202
AlwNI	CAGNNNCTG	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	39
BamHI	GGATCC	1 cut(s)	194
BbrPI	CACGTG	1 cut(s)	260
BccI	CCATC	2 cut(s)	128, 272
BcoDI	GTCTC	2 cut(s)	104, 312
BmiI	GGNNCC	1 cut(s)	196
BpuEI	CTTGAG	1 cut(s)	275
BsaAI	YACGTR	1 cut(s)	260
Bse1I	ACTGG	2 cut(s)	88, 205
BseGI	GGATG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	184
BseNI	ACTGG	2 cut(s)	88, 205
BseRI	GAGGAG	1 cut(s)	158
BsmAI	GTCTC	2 cut(s)	104, 312
Bsp143I	GATC	2 cut(s)	153, 194
BspCNI	CTCAG	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	196
BspPI	GGATC	2 cut(s)	189, 202
BsrI	ACTGG	2 cut(s)	88, 205
BssMI	GATC	2 cut(s)	153, 194
Bst4CI	ACNGT	1 cut(s)	127
BstBAI	YACGTR	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	3 cut(s)	74, 170, 320
BstF5I	GGATG	1 cut(s)	37
BstKTI	GATC	2 cut(s)	156, 197
BstMAI	GTCTC	2 cut(s)	104, 312
BstMBI	GATC	2 cut(s)	153, 194
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BtsCI	GGATG	1 cut(s)	37
Cac8I	GCNNGC	1 cut(s)	255
CaiI	CAGNNNCTG	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	202
CspCI	CAANNNNNGTGG	2 cut(s)	112, 147
CviAII	CATG	1 cut(s)	199
CviJI	RGCY	7 cut(s)	68, 116, 147, 178, 295, 335, 359
CviKI_1	RGCY	7 cut(s)	68, 116, 147, 178, 295, 335, 359
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	3 cut(s)	74, 170, 320
DpnI	GATC	2 cut(s)	155, 196
DpnII	GATC	2 cut(s)	153, 194
Eco72I	CACGTG	1 cut(s)	260
FaeI	CATG	1 cut(s)	202
FaiI	YATR	3 cut(s)	43, 200, 225
FatI	CATG	1 cut(s)	198
FokI	GGATG	1 cut(s)	24
Hin1II	CATG	1 cut(s)	202
HinfI	GANTC	1 cut(s)	5
HphI	GGTGA	1 cut(s)	39
Hpy188I	TCNGA	2 cut(s)	173, 345
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4IV	ACGT	1 cut(s)	259
HpyCH4V	TGCA	4 cut(s)	28, 223, 253, 313
HpyF3I	CTNAG	3 cut(s)	74, 170, 320
HpySE526I	ACGT	1 cut(s)	259
Hsp92II	CATG	1 cut(s)	202
Kzo9I	GATC	2 cut(s)	153, 194
LpnPI	CCDG	2 cut(s)	69, 218
MaeII	ACGT	1 cut(s)	259
MaeIII	GTNAC	2 cut(s)	79, 90
MalI	GATC	2 cut(s)	155, 196
MboI	GATC	2 cut(s)	153, 194
MboII	GAAGA	1 cut(s)	358
MfeI	CAATTG	1 cut(s)	314
MflI	RGATCY	1 cut(s)	194
MluCI	AATT	2 cut(s)	314, 326
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	3 cut(s)	179, 235, 299
MseI	TTAA	4 cut(s)	57, 149, 180, 361
MunI	CAATTG	1 cut(s)	314
NdeII	GATC	2 cut(s)	153, 194
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	1 cut(s)	196
PfeI	GAWTC	1 cut(s)	5
PmaCI	CACGTG	1 cut(s)	260
PmlI	CACGTG	1 cut(s)	260
Ppu21I	YACGTR	1 cut(s)	260
PspCI	CACGTG	1 cut(s)	260
PspN4I	GGNNCC	1 cut(s)	196
PstNI	CAGNNNCTG	1 cut(s)	310
PsuI	RGATCY	1 cut(s)	194
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SaqAI	TTAA	4 cut(s)	57, 149, 180, 361
Sau3AI	GATC	2 cut(s)	153, 194
SetI	ASST	8 cut(s)	36, 118, 149, 180, 262, 291, 297, 361
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	2 cut(s)	314, 326
TaaI	ACNGT	1 cut(s)	127
TaiI	ACGT	1 cut(s)	262
TaqI	TCGA	1 cut(s)	156
TasI	AATT	2 cut(s)	314, 326
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	4 cut(s)	57, 149, 180, 361
Tru9I	TTAA	4 cut(s)	57, 149, 180, 361
TspDTI	ATGAA	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.