Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0003660

Physical Location & Seq

Genomic Coordinates Forward (+)

5947596 .. 5950854

Gene Structure 3259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG075300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGAAGTCGAGGTTACAAGGGTATTCTGTTGAGACAGCTATTGCCACAGTAGTTGATGGAAATGACAGCTTAAAGATCGACACCAAACTCCTCAGAGAGCTTAACATTCGGGTTGGATCCATGTACCAGTTCATCGGCGAACTGCATATTGAACCCAATAATGAGGCAGTCTTGCAAGCACGTGTGGGTAGGAATGTTGATGGCATTGACCTCAAGCTCTATTATCAGTCTCTGCAATTGCTAAGACAATTTCAAGCCAATCATCTGAAGAACCCAACAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0000781 GO:0003674 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006139 GO:0006259 GO:0006457 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010521 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0030234 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0042592 GO:0043086 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044092 GO:0044183 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045934 GO:0046483 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051276 GO:0051338 GO:0051348 GO:0051972 GO:0051974 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098687 GO:0098727 GO:0098772 GO:1901360 GO:2000112 GO:2000113 GO:2000278 GO:2000279

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ten1_2

Protein Analysis

94

Amino Acids

10.64

Weight (kDa)

8.05

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ten1_2	PF15490	4 - 87	1.9e-27	Telomere-capping, CST complex subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0003660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56260 AT1G56260
fragaria_vesca	FvH4_6g06960 FvH4_6g06960 FvH4_6g06960
malus_domestica	MD04G1197300.v1.1 MD12G1210100.v1.1
prunus_persica	Prupe.2G221300_v2.0.a1 Prupe.2G221300_v2.0.a1 Prupe.2G221300_v2.0.a1 Prupe.2G221300_v2.0.a1 Prupe.3G209800_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1
pyrus_communis	pycom04g17440 pycom12g19750
rosa_chinensis	RchiOBHm_Chr3g0456501
rosa_laevigata	RLG00000025300
rosa_multiflora	Rmu_sc0002607.1_g000009 Rmu_sc0031879.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422690
rosa_rugosa	Rorug03G0013400 Rorug03G0013400
rosa_samantha	Rh3AG073900 Rh3BG075800 Rh3CG075300 Rh3DG077500
rosa_wichuraiana	Rw3G006340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	111, 124
AcvI	CACGTG	1 cut(s)	182
AfaI	GTAC	1 cut(s)	125
AflIII	ACRYGT	1 cut(s)	181
AgsI	TTSAA	2 cut(s)	152, 254
AluBI	AGCT	5 cut(s)	38, 69, 100, 217, 281
AluI	AGCT	5 cut(s)	38, 69, 100, 217, 281
Alw26I	GTCTC	2 cut(s)	26, 234
AlwI	GGATC	2 cut(s)	111, 124
AlwNI	CAGNNNCTG	1 cut(s)	232
BamHI	GGATCC	1 cut(s)	116
BbrPI	CACGTG	1 cut(s)	182
BccI	CCATC	2 cut(s)	50, 194
BcoDI	GTCTC	2 cut(s)	26, 234
BmiI	GGNNCC	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	197
BsaAI	YACGTR	1 cut(s)	182
Bse1I	ACTGG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	106
BseNI	ACTGG	1 cut(s)	127
BseRI	GAGGAG	1 cut(s)	80
BsmAI	GTCTC	2 cut(s)	26, 234
Bsp143I	GATC	2 cut(s)	75, 116
BspCNI	CTCAG	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	118
BspPI	GGATC	2 cut(s)	111, 124
BsrI	ACTGG	1 cut(s)	127
BssMI	GATC	2 cut(s)	75, 116
Bst4CI	ACNGT	1 cut(s)	49
BstBAI	YACGTR	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	2 cut(s)	92, 242
BstKTI	GATC	2 cut(s)	78, 119
BstMAI	GTCTC	2 cut(s)	26, 234
BstMBI	GATC	2 cut(s)	75, 116
BstX2I	RGATCY	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	116
Cac8I	GCNNGC	1 cut(s)	177
CaiI	CAGNNNCTG	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	124
CspCI	CAANNNNNGTGG	2 cut(s)	34, 69
CviAII	CATG	1 cut(s)	121
CviJI	RGCY	6 cut(s)	38, 69, 100, 217, 257, 281
CviKI_1	RGCY	6 cut(s)	38, 69, 100, 217, 257, 281
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	2 cut(s)	92, 242
DpnI	GATC	2 cut(s)	77, 118
DpnII	GATC	2 cut(s)	75, 116
Eco72I	CACGTG	1 cut(s)	182
FaeI	CATG	1 cut(s)	124
FaiI	YATR	2 cut(s)	122, 147
FatI	CATG	1 cut(s)	120
Hin1II	CATG	1 cut(s)	124
Hpy188I	TCNGA	2 cut(s)	95, 267
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	3 cut(s)	145, 175, 235
HpyF3I	CTNAG	2 cut(s)	92, 242
HpySE526I	ACGT	1 cut(s)	181
Hsp92II	CATG	1 cut(s)	124
Kzo9I	GATC	2 cut(s)	75, 116
LpnPI	CCDG	1 cut(s)	140
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	1 cut(s)	12
MalI	GATC	2 cut(s)	77, 118
MboI	GATC	2 cut(s)	75, 116
MboII	GAAGA	1 cut(s)	280
MfeI	CAATTG	1 cut(s)	236
MflI	RGATCY	1 cut(s)	116
MluCI	AATT	2 cut(s)	236, 248
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	4 cut(s)	3, 101, 157, 221
MseI	TTAA	3 cut(s)	71, 102, 283
MunI	CAATTG	1 cut(s)	236
NdeII	GATC	2 cut(s)	75, 116
NlaIII	CATG	1 cut(s)	124
NlaIV	GGNNCC	1 cut(s)	118
PmaCI	CACGTG	1 cut(s)	182
PmlI	CACGTG	1 cut(s)	182
Ppu21I	YACGTR	1 cut(s)	182
PspCI	CACGTG	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	118
PstNI	CAGNNNCTG	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	116
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SaqAI	TTAA	3 cut(s)	71, 102, 283
Sau3AI	GATC	2 cut(s)	75, 116
SetI	ASST	8 cut(s)	14, 40, 71, 102, 184, 213, 219, 283
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	2 cut(s)	236, 248
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	1 cut(s)	184
TaqI	TCGA	2 cut(s)	8, 78
TasI	AATT	2 cut(s)	236, 248
Tru1I	TTAA	3 cut(s)	71, 102, 283
Tru9I	TTAA	3 cut(s)	71, 102, 283
TspDTI	ATGAA	2 cut(s)	17, 121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.