Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001577

Physical Location & Seq

Genomic Coordinates Reverse (-)

1038016 .. 1049831

Gene Structure 11816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0013400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGATGGCTTACATCCCTCCACACAAGCGAAGCTCAAATGAAGCTGAGAGGCCGTTTCCAACTCCAGACAAGCTTGCTCCTTTGTTTAAGAGAAATGTAAATATAAGGTCATCAAAGTCTAATGATAATTGGACTGGGAAGGTAATTTGGGCAGACCAAGCCATTTCGAAATGGTGGGCACTTGGTTTGGATGATGACACCCAGTTTCCATCTTCTGTTAATCTTGAACTCATTTCCTTGGAAACCATTGAGCACAAAATCGGAGAAAAGCATCTAGCTTTAATGAATTCTGGTCTTGCTACTGGTAGTGAGGTGAAATGGGACTTGCCAAAGAGTCCTTGGGTGTATATAGCAGAGAATGTGCTTGAAGACCTAATTGCGTCTTTTGACAATATGAGGAAGGAAATGGAGTCCCCAAAGTTAGAAGAACTGAAGCCTAATTTGGTTGCTCGAGTTGGAAAAGTTCTCTTCCATAGGAGCCCTTCAGTTAACCAGGAATCTCTGAGAGAAAACTTGACTACAAATATGTTGAAAAATTGGAAGAGATCATTTTACACAAATGTTCCTGTTTCCTATACGGAGAAGATTGTAAACGAAGTTGTCCCGAATATTGGGGTTGATTTTGAATCGGAGAAAGATATGTACCTAGTAAAGTTGGCTGATTCCACAACACCAGATTCAACTCTCCTCTGCAAATGTAGTGTGAAAGCAGATGGAAAGCTACAACTCTACAAGGTCGAACTAAACCAAGTGCGTAATATGGTGATGGATACATCCATCCCTAATAAGAATCTGGACCTGAGACTGATGTTAAACATGAAGAGAGTCATAACAACTCATACTGATGATGATATGCAAAGCATTAGGGATCTGGTTGATTCTGCGATTACAGATCCAGATGTGAAGGGTGGGTTGAGATGGCCCCTGGAGAAGACATCTTCTGGAAAGTACAATGTTGTTGGGGCCTGGCATGTAAGAGCCAAGGAATATAAAACTAAGTCATTAAGATTTAAGGTCAGGCATGCCGATCGATTTGATTTCAGAACCTCAATTGGTGAAGCTTCTTGGGAGATCAGTCTGAGGTTGAAAAAGCTAGTCTCAAAGTTGAAGGAAGAGAAGGTTGACATCGACTCTGTTTCTGAGATGCTGGAGGAAAATATGAAGTTCATATATGACAACTTCTTAAGCTGTGAAAGTTTTCTCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005319 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0006970 GO:0007275 GO:0007389 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009611 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009897 GO:0009965 GO:0009986 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0010876 GO:0015075 GO:0015245 GO:0015318 GO:0015399 GO:0015405 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0033036 GO:0033993 GO:0034220 GO:0042221 GO:0042623 GO:0042626 GO:0042802 GO:0042803 GO:0043492 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0080051 GO:0090698 GO:0097305 GO:0098552 GO:0098656 GO:0099402 GO:1901700 GO:1903825 GO:1905039 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

402

Amino Acids

46.17

Weight (kDa)

7.07

Isoelectric Point (pI)

37.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7903	PF25475	43 - 394	7.6e-154	Domain of unknown function (DUF7903)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16785 AT3G16785 AT3G16785 AT3G16785 AT3G16785 AT3G16785
fragaria_vesca	FvH4_4g18810 FvH4_6g06940 FvH4_6g06940 FvH4_6g06940
malus_domestica	MD04G1197500.v1.1 MD12G1210300.v1.1 MD13G1162600.v1.1 MD16G1162400.v1.1
prunus_persica	Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.6G317900_v2.0.a1 Prupe.6G317900_v2.0.a1 Prupe.6G317900_v2.0.a1
pyrus_communis	pycom04g17480 pycom13g13890 pycom16g13770
rosa_chinensis	RchiOBHm_Chr3g0456481 RchiOBHm_Chr4g0423621
rosa_laevigata	RLG00000007541 RLG00000025302
rosa_multiflora	Rmu_co8413375.1_g000001 Rmu_sc0000464.1_g000017 Rmu_sc0002607.1_g000011 Rmu_sc0008373.1_g000012 Rmu_sc0016309.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365830 Rroxscaffold_6G00422720
rosa_rugosa	Rorug03G0013400 Rorug03G0013400 Rorug03G0013400 Rorug04G0189100
rosa_samantha	Rh3AG073700 Rh3BG075600 Rh3DG076900 Rh4AG248700 Rh4BG254000 Rh4DG249000
rosa_wichuraiana	Rw3G006320 Rw4G021300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	876, 887
AcsI	RAATTY	1 cut(s)	286
AcuI	CTGAAG	2 cut(s)	452, 468
AfaI	GTAC	2 cut(s)	644, 950
AfiI	CCNNNNNNNGG	1 cut(s)	611
AflII	CTTAAG	1 cut(s)	1183
AgsI	TTSAA	7 cut(s)	227, 368, 532, 626, 681, 1087, 1108
AjnI	CCWGG	3 cut(s)	492, 924, 965
AjuI	GAANNNNNNNTTGG	2 cut(s)	425, 457
AluBI	AGCT	8 cut(s)	33, 44, 73, 278, 721, 1061, 1093, 1188
AluI	AGCT	8 cut(s)	33, 44, 73, 278, 721, 1061, 1093, 1188
Alw21I	GWGCWC	1 cut(s)	255
Alw26I	GTCTC	2 cut(s)	796, 1102
AlwI	GGATC	2 cut(s)	876, 887
Ama87I	CYCGRG	1 cut(s)	450
AoxI	GGCC	3 cut(s)	50, 920, 963
ApoI	RAATTY	1 cut(s)	286
Asp700I	GAANNNNTTC	1 cut(s)	1197
AspS9I	GGNCC	3 cut(s)	796, 921, 963
AsuHPI	GGTGA	3 cut(s)	325, 775, 1067
AsuII	TTCGAA	1 cut(s)	167
AvaI	CYCGRG	1 cut(s)	450
AvaII	GGWCC	1 cut(s)	796
BaeGI	GKGCMC	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	482
BbsI	GAAGAC	2 cut(s)	375, 938
Bbv12I	GWGCWC	1 cut(s)	255
BccI	CCATC	5 cut(s)	217, 707, 760, 785, 912
BceAI	ACGGC	1 cut(s)	37
BcgI	CGANNNNNNTGC	2 cut(s)	1010, 1044
BciT130I	CCWGG	3 cut(s)	494, 926, 967
BciVI	GTATCC	1 cut(s)	763
BcoDI	GTCTC	2 cut(s)	796, 1102
BfaI	CTAG	3 cut(s)	275, 647, 1094
BfrI	CTTAAG	1 cut(s)	1183
BfuI	GTATCC	1 cut(s)	763
Bme1390I	CCNGG	3 cut(s)	494, 926, 967
Bme18I	GGWCC	1 cut(s)	796
BmeT110I	CYCGRG	1 cut(s)	450
BmgT120I	GGNCC	3 cut(s)	796, 921, 963
BmiI	GGNNCC	3 cut(s)	479, 923, 964
BmrFI	CCNGG	3 cut(s)	494, 926, 967
BmrI	ACTGGG	2 cut(s)	144, 196
BmsI	GCATC	2 cut(s)	280, 1134
BmuI	ACTGGG	2 cut(s)	144, 196
BpiI	GAAGAC	2 cut(s)	375, 938
BpmI	CTGGAG	3 cut(s)	48, 947, 1169
Bpu14I	TTCGAA	1 cut(s)	167
Bsa29I	ATCGAT	1 cut(s)	1030
BsaJI	CCNNGG	4 cut(s)	237, 338, 924, 981
Bsc4I	CCNNNNNNNGG	1 cut(s)	611
Bse1I	ACTGG	3 cut(s)	139, 202, 307
BseBI	CCWGG	3 cut(s)	494, 926, 967
BseCI	ATCGAT	1 cut(s)	1030
BseDI	CCNNGG	4 cut(s)	237, 338, 924, 981
BseGI	GGATG	4 cut(s)	12, 196, 773, 777
BseLI	CCNNNNNNNGG	1 cut(s)	611
BseMII	CTCAG	5 cut(s)	36, 494, 791, 1070, 1131
BseNI	ACTGG	3 cut(s)	139, 202, 307
BseRI	GAGGAG	1 cut(s)	677
BseSI	GKGCMC	1 cut(s)	181
Bsh1285I	CGRYCG	1 cut(s)	1030
BshFI	GGCC	3 cut(s)	52, 922, 965
BshVI	ATCGAT	1 cut(s)	1030
BsiEI	CGRYCG	1 cut(s)	1030
BsiHKAI	GWGCWC	1 cut(s)	255
BsiHKCI	CYCGRG	1 cut(s)	450
BslFI	GGGAC	3 cut(s)	335, 397, 587
BslI	CCNNNNNNNGG	1 cut(s)	611
BsmAI	GTCTC	2 cut(s)	796, 1102
BsmFI	GGGAC	3 cut(s)	335, 397, 587
BsnI	GGCC	3 cut(s)	52, 922, 965
BsoBI	CYCGRG	1 cut(s)	450
Bsp119I	TTCGAA	1 cut(s)	167
Bsp1286I	GDGCHC	3 cut(s)	181, 255, 482
Bsp143I	GATC	5 cut(s)	545, 868, 892, 1027, 1071
BspANI	GGCC	3 cut(s)	52, 922, 965
BspCNI	CTCAG	5 cut(s)	37, 495, 792, 1071, 1132
BspDI	ATCGAT	1 cut(s)	1030
BspLI	GGNNCC	3 cut(s)	479, 923, 964
BspPI	GGATC	2 cut(s)	876, 887
BspT104I	TTCGAA	1 cut(s)	167
BspTI	CTTAAG	1 cut(s)	1183
BsrI	ACTGG	3 cut(s)	139, 202, 307
BssECI	CCNNGG	4 cut(s)	237, 338, 924, 981
BssMI	GATC	5 cut(s)	545, 868, 892, 1027, 1071
BssT1I	CCWWGG	3 cut(s)	237, 338, 981
Bst2UI	CCWGG	3 cut(s)	494, 926, 967
Bst6I	CTCTTC	4 cut(s)	473, 536, 815, 1107
BstAFI	CTTAAG	1 cut(s)	1183
BstBI	TTCGAA	1 cut(s)	167
BstC8I	GCNNGC	2 cut(s)	75, 1023
BstDEI	CTNAG	6 cut(s)	45, 503, 800, 996, 1079, 1140
BstF5I	GGATG	4 cut(s)	12, 196, 773, 777
BstKTI	GATC	5 cut(s)	548, 871, 895, 1030, 1074
BstMAI	GTCTC	2 cut(s)	796, 1102
BstMBI	GATC	5 cut(s)	545, 868, 892, 1027, 1071
BstMCI	CGRYCG	1 cut(s)	1030
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNI	CCWGG	3 cut(s)	494, 926, 967
BstNSI	RCATGY	2 cut(s)	974, 1025
BstSCI	CCNGG	3 cut(s)	492, 924, 965
BstSLI	GKGCMC	1 cut(s)	181
BstV2I	GAAGAC	2 cut(s)	375, 938
BstX2I	RGATCY	2 cut(s)	868, 892
BstYI	RGATCY	2 cut(s)	868, 892
Bsu15I	ATCGAT	1 cut(s)	1030
BsuI	GTATCC	1 cut(s)	763
BsuRI	GGCC	3 cut(s)	52, 922, 965
BsuTUI	ATCGAT	1 cut(s)	1030
BtsCI	GGATG	4 cut(s)	12, 196, 773, 777
Cac8I	GCNNGC	2 cut(s)	75, 1023
Cfr13I	GGNCC	3 cut(s)	796, 921, 963
ClaI	ATCGAT	1 cut(s)	1030
CseI	GACGC	1 cut(s)	369
Csp6I	GTAC	2 cut(s)	643, 949
CviAII	CATG	4 cut(s)	817, 971, 1022, 1206
CviQI	GTAC	2 cut(s)	643, 949
DdeI	CTNAG	6 cut(s)	45, 503, 800, 996, 1079, 1140
DpnI	GATC	5 cut(s)	547, 870, 894, 1029, 1073
DpnII	GATC	5 cut(s)	545, 868, 892, 1027, 1071
Eam1104I	CTCTTC	4 cut(s)	473, 536, 815, 1107
EarI	CTCTTC	4 cut(s)	473, 536, 815, 1107
Eco130I	CCWWGG	3 cut(s)	237, 338, 981
Eco24I	GRGCYC	1 cut(s)	482
Eco47I	GGWCC	1 cut(s)	796
Eco57I	CTGAAG	2 cut(s)	452, 468
Eco88I	CYCGRG	1 cut(s)	450
EcoO109I	RGGNCCY	1 cut(s)	963
EcoRI	GAATTC	1 cut(s)	286
EcoRII	CCWGG	3 cut(s)	492, 924, 965
EcoT14I	CCWWGG	3 cut(s)	237, 338, 981
EcoT38I	GRGCYC	1 cut(s)	482
ErhI	CCWWGG	3 cut(s)	237, 338, 981
FaeI	CATG	4 cut(s)	820, 974, 1025, 1209
FaqI	GGGAC	3 cut(s)	335, 397, 587
FatI	CATG	4 cut(s)	816, 970, 1021, 1205
FokI	GGATG	3 cut(s)	203, 760, 764
FriOI	GRGCYC	1 cut(s)	482
FspBI	CTAG	3 cut(s)	275, 647, 1094
GsuI	CTGGAG	3 cut(s)	48, 947, 1169
HaeIII	GGCC	3 cut(s)	52, 922, 965
HgaI	GACGC	1 cut(s)	369
Hin1II	CATG	4 cut(s)	820, 974, 1025, 1209
HincII	GTYRAC	2 cut(s)	490, 1123
HindII	GTYRAC	2 cut(s)	490, 1123
HindIII	AAGCTT	2 cut(s)	71, 1059
HpaI	GTTAAC	1 cut(s)	490
HphI	GGTGA	3 cut(s)	325, 775, 1067
Hpy166II	GTNNAC	3 cut(s)	490, 592, 1123
Hpy188I	TCNGA	6 cut(s)	263, 504, 631, 1043, 1080, 1141
Hpy188III	TCNNGA	6 cut(s)	65, 224, 604, 794, 896, 942
Hpy8I	GTNNAC	3 cut(s)	490, 592, 1123
HpyAV	CCTTC	6 cut(s)	133, 394, 492, 898, 1102, 1111
HpyCH4V	TGCA	2 cut(s)	693, 856
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	6 cut(s)	45, 503, 800, 996, 1079, 1140
Hsp92II	CATG	4 cut(s)	820, 974, 1025, 1209
KspAI	GTTAAC	1 cut(s)	490
Kzo9I	GATC	5 cut(s)	545, 868, 892, 1027, 1071
LmnI	GCTCC	2 cut(s)	82, 477
LweI	GCATC	2 cut(s)	280, 1134
MaeI	CTAG	3 cut(s)	275, 647, 1094
MalI	GATC	5 cut(s)	547, 870, 894, 1029, 1073
MboI	GATC	5 cut(s)	545, 868, 892, 1027, 1071
MfeI	CAATTG	1 cut(s)	1050
MflI	RGATCY	2 cut(s)	868, 892
MhlI	GDGCHC	3 cut(s)	181, 255, 482
MluCI	AATT	7 cut(s)	127, 144, 286, 375, 439, 535, 1050
MlyI	GAGTC	4 cut(s)	343, 419, 834, 1124
MmeI	TCCRAC	2 cut(s)	83, 436
MnlI	CCTC	8 cut(s)	27, 42, 304, 390, 698, 1057, 1074, 1144
MroXI	GAANNNNTTC	1 cut(s)	1197
MseI	TTAA	8 cut(s)	87, 219, 281, 489, 812, 1004, 1011, 1184
MslI	CAYNNNNRTG	1 cut(s)	843
MspCI	CTTAAG	1 cut(s)	1183
MspR9I	CCNGG	3 cut(s)	494, 926, 967
MunI	CAATTG	1 cut(s)	1050
MvaI	CCWGG	3 cut(s)	494, 926, 967
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeII	GATC	5 cut(s)	545, 868, 892, 1027, 1071
NlaIII	CATG	4 cut(s)	820, 974, 1025, 1209
NlaIV	GGNNCC	3 cut(s)	479, 923, 964
NspI	RCATGY	2 cut(s)	974, 1025
NspV	TTCGAA	1 cut(s)	167
PaeI	GCATGC	1 cut(s)	1025
PaeR7I	CTCGAG	1 cut(s)	450
PdmI	GAANNNNTTC	1 cut(s)	1197
PfeI	GAWTC	6 cut(s)	497, 626, 662, 677, 790, 878
Ple19I	CGATCG	1 cut(s)	1030
PleI	GAGTC	4 cut(s)	342, 418, 833, 1124
PpsI	GAGTC	4 cut(s)	342, 418, 833, 1124
Psp6I	CCWGG	3 cut(s)	492, 924, 965
PspGI	CCWGG	3 cut(s)	492, 924, 965
PspN4I	GGNNCC	3 cut(s)	479, 923, 964
PspPI	GGNCC	3 cut(s)	796, 921, 963
PspXI	VCTCGAGB	1 cut(s)	450
PsuI	RGATCY	2 cut(s)	868, 892
PvuI	CGATCG	1 cut(s)	1030
RsaI	GTAC	2 cut(s)	644, 950
RsaNI	GTAC	2 cut(s)	643, 949
RseI	CAYNNNNRTG	1 cut(s)	843
SaqAI	TTAA	8 cut(s)	87, 219, 281, 489, 812, 1004, 1011, 1184
Sau3AI	GATC	5 cut(s)	545, 868, 892, 1027, 1071
Sau96I	GGNCC	3 cut(s)	796, 921, 963
SchI	GAGTC	4 cut(s)	343, 419, 834, 1124
ScrFI	CCNGG	3 cut(s)	494, 926, 967
SduI	GDGCHC	3 cut(s)	181, 255, 482
SfaNI	GCATC	2 cut(s)	280, 1134
Sfr274I	CTCGAG	1 cut(s)	450
SfuI	TTCGAA	1 cut(s)	167
SinI	GGWCC	1 cut(s)	796
SlaI	CTCGAG	1 cut(s)	450
SmiMI	CAYNNNNRTG	1 cut(s)	843
SmlI	CTYRAG	2 cut(s)	450, 1183
SmoI	CTYRAG	2 cut(s)	450, 1183
SphI	GCATGC	1 cut(s)	1025
Sse9I	AATT	7 cut(s)	127, 144, 286, 375, 439, 535, 1050
SspI	AATATT	1 cut(s)	610
SspMI	CTAG	3 cut(s)	275, 647, 1094
StyD4I	CCNGG	3 cut(s)	492, 924, 965
StyI	CCWWGG	3 cut(s)	237, 338, 981
TaqI	TCGA	5 cut(s)	167, 451, 738, 1030, 1128
TasI	AATT	7 cut(s)	127, 144, 286, 375, 439, 535, 1050
TatI	WGTACW	1 cut(s)	948
TfiI	GAWTC	6 cut(s)	497, 626, 662, 677, 790, 878
Tru1I	TTAA	8 cut(s)	87, 219, 281, 489, 812, 1004, 1011, 1184
Tru9I	TTAA	8 cut(s)	87, 219, 281, 489, 812, 1004, 1011, 1184
TspDTI	ATGAA	5 cut(s)	54, 299, 833, 1156, 1175
TspGWI	ACGGA	1 cut(s)	593
Vha464I	CTTAAG	1 cut(s)	1183
VpaK11BI	GGWCC	1 cut(s)	796
XapI	RAATTY	1 cut(s)	286
XceI	RCATGY	2 cut(s)	974, 1025
XcmI	CCANNNNNNNNNTGG	1 cut(s)	336
XhoI	CTCGAG	1 cut(s)	450
XmnI	GAANNNNTTC	1 cut(s)	1197
XspI	CTAG	3 cut(s)	275, 647, 1094

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.