Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001577

Physical Location & Seq

Genomic Coordinates Forward (+)

4180908 .. 4190978

Gene Structure 10071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g06940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3288 bp

ATGTCGTCGGAGAAGCTCATTCCCAACGGTGCTGTACACTCCGATTCGTTCCGGCAATGCGGGGAGACGGCGCCGATTTTTGCAGAGCTGCCGGTGGCCACTATCGTATCGGTGTCGCGACCCGATACCGGAGATATCAGCCCCATGCTTTTGTCTTACACAATTGAGTTTCAGTACAAACAGTTCAAGTGGCGGTTACTGAAGAAAGCATCACAAGTTCTTTATCTACATTTTGCTTTGAAGAAACGTGCTATAATTGAGGAATTTCATGAGAAACAAGAGCAGGTTAAAGAATGGCTCCACAGCTTAGGAATAGCAGATCAGACAGCAGTAGTACAAGATGATGATGAACCAGATGATGGGGCTGTTCCTTTACATCATGACGATAGTGTTAGAAATAGATATGTTCCATCTCGTGCCGCATTTCCCATCATCCGCCCAGCGCTAGGAGGGCAGCAGTGCATTTCAGATCGAGCAAAGGTGGTGATGCTGGGTTATTTGAACCATTTTTTGGGAAACATGGATCTAGTGAATTCTCGAGAGGTTTGCAAATTTTTGGAGGTTTCACGGTTGTCCTTCTTACAAGAGTATGGACCAAAGTTGAAAGAAGGCTATGTCATGGTGAAACATCTACCAAAATTTTCAGGGGCTAATTCTGATGTGGCATCTTGTGCTGGCTTTTGTCTGGGTTGTTGCAGCAACAATTGGCAAAAGGTCTGGGCTGTTCTAAAACCTGGGTTCTTGGCCTTACTAGATGATCCTTTTGACACTGAACTTCTGGATATTATCATTTTCAATGCTCCTCCACCCTTGAATGGAAATGGACAGTGTGAAAATTATCTAGCAAGTCAAATAAAGGAACGGAACCCTTTACGTTATACATTTCGGGTTGCTTCTGGAAATCAAAACTTAAGGTTAAGAACCACTAGCAAAGCAAAAGTTAAAGATTGGATTACTGCAATTAATGATACTGGCCTCAGGCCTCATGAAGGTTGTTGTCATCCTCATCGTTTCGGTTCCTTTGCTCCTCCCAGAGGTTTGACTGATGATGGGAGTCAAGCTCAGTGGTTCATAGATGGTGAAGCAGCATTTGAAGCTATTGCTTCCTCTATTGAGGGTGCAAACTCAGAGATATTCATTACTGGCTGGTGGCTTTGCCCAGAACTGTATCTAAGACGTCCTTTCAGTAGCAACTCTTCTTCTAGGCTTGATGCTTTACTAGAAACAAAAGCTAAGCAAGGGGTTCAGATTTACATTCTTCTCTACAAGGAGGTTTCTCTTGCTTTAAAGATCAACAGCTTATACAGTAAGAAGAAGCTTTCAAAGATTCATGAGAACGTTAGAGTAATGCGCTATCCGGACCGTTTTCCCACAGGAATTTACTTATGGTCACACCATGAAAAACTTGTCATTGTTGATTATCAGATTTGCTACATTGGAGGATTAGATTTGTGCTTTGGCCGTTATGACACGGTTGAACACAAAGTAGGTGACTGTCCTCCTTCTGTATGGCCAGGGAAGGATTATTATAACCCAAGAGAATCTGAACCAAACTCATGGGAAGATGTAATGAAAGATGAATTGGAGCGCGAAAAAGTTCCGCGTATGCCATGGCATGATGTCCACTGTGCTCTTTGGGGACCTCCTTGCCGTGACATTGCCAGACACTTTGTTCAAAGGTGGAATCATGCTAAGAGAAACAAAGCTCCAAATGAACAAGCACTTCCACTACTTATGCCACAACACCACATGGTAATTCCTCATTACATGGGAAAAAGTAGAGAGATAGACATTGAGAAAAGCAAAGTGGAAGAGAACCAGAACGGGATCCAGAGAGAGAATTCATATTCCTCTCTGTCACCATTGCAAAATATCCCGTTGCTTTTGCCTCAAGAAGCTGACTGTTTGGATCCTCCTGGTGTAGATCAAAAGTTAAGTGCCCAGCACACGCATTGTTATCCTGTTAACCCGCCTAATGGGATATCTGGTAGTGTTTTTTTCTCTTCCATGAATCCCAAAGTTGAAGCTCTAGAACCAGATACACAGATGATGGATGATCTTTATTCTATGGATCTTGAAAGTGGAACCAATATAAACTCAGTGGTCCAATCTGGCTTGACAACTACAAATGAATTGTCAGAAAGTTCAGAGGAAACTGATCATGCTGTTGCTACTGATGACGGTGGACAAACAGGTCCTCGTGCTGCATGCAAATGTCAGGTAATTCGAAGTGTGAGCCAGTGGTCCGCTGGAACTAGCCAAACTGAAGAAAGCATACATAATGCTTATTGCTATCTCATCGAAAAGGCAGAACACTTTGTTTATATTGAGAATCAATTTTTCATATCAGGGTTTTCAGGGGATGAGATTATACAGAACCGTATCCTGGAAGTATTATACAGGCGCATTGTTCTAGCACACAAAGAACAAAAGTGTTTTAGGGTTATTGTTGTCATGCCACTCTTGCCTGGCTTTCAGGGTGGCGTGGATGATTATGGTGCAGCAACTGTTAGAGCCATTATGCATTGGCAGTATCGAACCATTAGCTGGGAGAAGTACTCAATACTTCATAAACTTAAAGTTTTGCTTGGTGCTAAGACACACGACTACATTTCTTTCTATGGTCTGAGAACATATGGAAAACTTTCTGAAGGTGGCCCTTTATCCACAAGTCAGGTATATGTACACAGTAAAGTGATGATTGTAGATGACCGTGTTGCTTTGATTGGATCATCAAATATTAATGACAGAAGTTTACTTGGATCAAGAGACTCTGAGATTGGTGTTGTCATTGAAGATAAAGAGTTTCTCGAATCATCCATGGCCGGACAGCCTTGGAAGGCCGGAAAGTTTTCTTATAGTCTTAGGTGCTCTCTGTGGTCTGAACACCTGGGTCTTCATGCAGGAGAGATAAATCAAATCAGTGATCCTGTGTCGGACTCAACATACAAGTATCTGTGGCTAGCAACTGCAAAGGAAAATTCAATTATATACCAAGAGGTATTCTCTTGTATTCCGAATGATTCTATAAACTCAAGGGCTGCTCTCAGAGAATCCATGGCTTTTTGGAAAGAGAAACTTGGGCAAACTACAATTGATCTGGGAATAGCTCCTAAGAAGCTAGAATCGTGGGAGAACGGACAGTACAAAGAAACAGATCCAATGGAAAGATTGAAACAGATAAGGGGACTCCTTGTTTCCTTTCCTTTAGAGTTTATGAACCAGGAAGATTTGAGACCAGTGTTTAACGAAAGTGAATTTTATACATCTCCTCAAGTATTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006629 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0006950 GO:0006995 GO:0007154 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009247 GO:0009267 GO:0009395 GO:0009605 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0009991 GO:0010033 GO:0016036 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019374 GO:0019375 GO:0019637 GO:0022622 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0032879 GO:0033554 GO:0042221 GO:0042578 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046434 GO:0046467 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051716 GO:0060627 GO:0065007 GO:0071496 GO:0071704 GO:0099402 GO:1901135 GO:1901137 GO:1901575 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

PH PLDc PLDc_2

Protein Analysis

1096

Amino Acids

124.01

Weight (kDa)

5.93

Isoelectric Point (pI)

40.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLDc	PF00614	461 - 488	6.1e-07	Phospholipase D Active site motif
PLDc_2	PF13091	860 - 938	5e-09	PLD-like domain
PLDc	PF00614	895 - 918	1.4e-07	Phospholipase D Active site motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16785 AT3G16785 AT3G16785 AT3G16785 AT3G16785 AT3G16785
fragaria_vesca	FvH4_4g18810 FvH4_6g06940 FvH4_6g06940 FvH4_6g06940
malus_domestica	MD04G1197500.v1.1 MD12G1210300.v1.1 MD13G1162600.v1.1 MD16G1162400.v1.1
prunus_persica	Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.6G317900_v2.0.a1 Prupe.6G317900_v2.0.a1 Prupe.6G317900_v2.0.a1
pyrus_communis	pycom04g17480 pycom13g13890 pycom16g13770
rosa_chinensis	RchiOBHm_Chr3g0456481 RchiOBHm_Chr4g0423621
rosa_laevigata	RLG00000007541 RLG00000025302
rosa_multiflora	Rmu_co8413375.1_g000001 Rmu_sc0000464.1_g000017 Rmu_sc0002607.1_g000011 Rmu_sc0008373.1_g000012 Rmu_sc0016309.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365830 Rroxscaffold_6G00422720
rosa_rugosa	Rorug03G0013400 Rorug03G0013400 Rorug03G0013400 Rorug04G0189100
rosa_samantha	Rh3AG073700 Rh3BG075600 Rh3DG076900 Rh4AG248700 Rh4BG254000 Rh4DG249000
rosa_wichuraiana	Rw3G006320 Rw4G021300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1530
AasI	GACNNNNNNGTC	1 cut(s)	2193
AatII	GACGTC	1 cut(s)	1180
Acc36I	ACCTGC	1 cut(s)	274
AccB1I	GGYRCC	1 cut(s)	70
AccB7I	CCANNNNNTGG	3 cut(s)	359, 511, 2547
AccII	CGCG	3 cut(s)	118, 1590, 1603
AccIII	TCCGGA	1 cut(s)	1357
AciI	CCGC	7 cut(s)	60, 193, 420, 436, 1601, 1970, 2247
AclI	AACGTT	1 cut(s)	1338
AcoI	YGGCCR	4 cut(s)	96, 1459, 1511, 2823
AcsI	RAATTY	8 cut(s)	263, 532, 551, 638, 1377, 1840, 2980, 3257
AcuI	CTGAAG	3 cut(s)	221, 2286, 2670
AcyI	GRCGYC	2 cut(s)	71, 1177
AfaI	GTAC	6 cut(s)	36, 176, 336, 2558, 2685, 3146
AfeI	AGCGCT	1 cut(s)	444
AflII	CTTAAG	1 cut(s)	910
AjnI	CCWGG	7 cut(s)	733, 1513, 1915, 2385, 2467, 2889, 3222
AjuI	GAANNNNNNNTTGG	4 cut(s)	494, 526, 1565, 1597
Alw21I	GWGCWC	2 cut(s)	1633, 2873
Alw26I	GTCTC	3 cut(s)	59, 2763, 3229
AlwNI	CAGNNNCTG	1 cut(s)	2507
Ama87I	CYCGRG	1 cut(s)	537
Aor13HI	TCCGGA	1 cut(s)	1357
Aor51HI	AGCGCT	1 cut(s)	444
AoxI	GGCC	9 cut(s)	96, 744, 973, 980, 1459, 1511, 2656, 2823, 2841
ApeKI	GCWGC	7 cut(s)	88, 454, 696, 1085, 2204, 2501, 3041
ApoI	RAATTY	8 cut(s)	263, 532, 551, 638, 1377, 1840, 2980, 3257
ArsI	GACNNNNNNTTYG	2 cut(s)	2120, 2152
AseI	ATTAAT	2 cut(s)	963, 2742
Asp700I	GAANNNNTTC	3 cut(s)	1596, 2644, 2851
AspLEI	GCGC	5 cut(s)	73, 445, 1353, 1590, 2406
AspS9I	GGNCC	7 cut(s)	593, 1360, 1640, 2104, 2195, 2244, 2657
AsuHPI	GGTGA	5 cut(s)	496, 634, 1091, 1502, 1851
AsuII	TTCGAA	1 cut(s)	2227
AsuNHI	GCTAGC	1 cut(s)	2962
AvaI	CYCGRG	1 cut(s)	537
AvaII	GGWCC	6 cut(s)	593, 1360, 1640, 2104, 2195, 2244
AxyI	CCTNAGG	1 cut(s)	977
BaeGI	GKGCMC	1 cut(s)	1942
BaeI	ACNNNNGTAYC	2 cut(s)	90, 123
BalI	TGGCCA	2 cut(s)	98, 1513
BamHI	GGATCC	2 cut(s)	1827, 1909
BanI	GGYRCC	1 cut(s)	70
BarI	GAAGNNNNNNTAC	4 cut(s)	1180, 1212, 2259, 2291
BauI	CACGAG	2 cut(s)	414, 2199
BbsI	GAAGAC	1 cut(s)	2888
Bbv12I	GWGCWC	2 cut(s)	1633, 2873
BbvI	GCAGC	7 cut(s)	75, 466, 708, 1097, 2191, 2513, 3028
BccI	CCATC	6 cut(s)	353, 418, 437, 1043, 1070, 2044
BceAI	ACGGC	3 cut(s)	84, 1446, 1635
BcgI	CGANNNNNNTGC	2 cut(s)	528, 562
BciT130I	CCWGG	7 cut(s)	735, 1515, 1917, 2387, 2469, 2891, 3224
BciVI	GTATCC	1 cut(s)	2393
BclI	TGATCA	1 cut(s)	2158
BcoDI	GTCTC	3 cut(s)	59, 2763, 3229
BfoI	RGCGCY	2 cut(s)	74, 446
BfrI	CTTAAG	1 cut(s)	910
BfuAI	ACCTGC	1 cut(s)	274
BfuI	GTATCC	1 cut(s)	2393
BisI	GCNGC	8 cut(s)	89, 420, 455, 697, 1086, 2205, 2502, 3042
BlpI	GCTNAGC	1 cut(s)	1233
BlsI	GCNGC	8 cut(s)	90, 421, 456, 698, 1087, 2206, 2503, 3043
BmcAI	AGTACT	1 cut(s)	2558
Bme1390I	CCNGG	7 cut(s)	735, 1515, 1917, 2387, 2469, 2891, 3224
Bme18I	GGWCC	6 cut(s)	593, 1360, 1640, 2104, 2195, 2244
BmeT110I	CYCGRG	1 cut(s)	537
BmgT120I	GGNCC	7 cut(s)	593, 1360, 1640, 2104, 2195, 2244, 2657
BmiI	GGNNCC	8 cut(s)	72, 299, 866, 1018, 1641, 1829, 1911, 2086
BmrFI	CCNGG	7 cut(s)	735, 1515, 1917, 2387, 2469, 2891, 3224
BmsI	GCATC	4 cut(s)	218, 477, 674, 1201
BmtI	GCTAGC	1 cut(s)	2966
BpiI	GAAGAC	1 cut(s)	2888
BplI	GAGNNNNNCTC	6 cut(s)	1045, 1077, 2543, 2575, 2990, 3022
Bpu10I	CCTNAGC	1 cut(s)	307
Bpu1102I	GCTNAGC	1 cut(s)	1233
Bpu14I	TTCGAA	1 cut(s)	2227
BpuEI	CTTGAG	3 cut(s)	1875, 3019, 3258
BsaHI	GRCGYC	2 cut(s)	71, 1177
BsaI	GGTCTC	1 cut(s)	3229
BsaJI	CCNNGG	7 cut(s)	734, 1514, 1610, 2820, 2834, 2890, 3057
BsaWI	WCCGGW	2 cut(s)	128, 1357
Bse118I	RCCGGY	1 cut(s)	91
Bse1I	ACTGG	4 cut(s)	976, 1147, 2239, 3239
Bse21I	CCTNAGG	1 cut(s)	977
Bse3DI	GCAATG	3 cut(s)	62, 1656, 1862
BseAI	TCCGGA	1 cut(s)	1357
BseBI	CCWGG	7 cut(s)	735, 1515, 1917, 2387, 2469, 2891, 3224
BseDI	CCNNGG	7 cut(s)	734, 1514, 1610, 2820, 2834, 2890, 3057
BseGI	GGATG	6 cut(s)	432, 1000, 2059, 2368, 2494, 2816
BseMI	GCAATG	3 cut(s)	62, 1656, 1862
BseMII	CTCAG	7 cut(s)	991, 1076, 1140, 2112, 2618, 2766, 3061
BseNI	ACTGG	4 cut(s)	976, 1147, 2239, 3239
BseRI	GAGGAG	3 cut(s)	792, 1017, 3261
BseSI	GKGCMC	1 cut(s)	1942
BseXI	GCAGC	7 cut(s)	75, 466, 708, 1097, 2191, 2513, 3028
BseYI	CCCAGC	4 cut(s)	439, 490, 1941, 2547
BsgI	GTGCAG	1 cut(s)	2520
Bsh1236I	CGCG	3 cut(s)	118, 1590, 1603
BshFI	GGCC	9 cut(s)	98, 746, 975, 982, 1461, 1513, 2658, 2825, 2843
BshNI	GGYRCC	1 cut(s)	70
BsiHKAI	GWGCWC	2 cut(s)	1633, 2873
BsiHKCI	CYCGRG	1 cut(s)	537
BsiSI	CCGG	6 cut(s)	52, 92, 129, 1358, 2826, 2844
BslFI	GGGAC	2 cut(s)	1653, 3201
BsmAI	GTCTC	3 cut(s)	59, 2763, 3229
BsmBI	CGTCTC	1 cut(s)	59
BsmFI	GGGAC	2 cut(s)	1653, 3201
BsnI	GGCC	9 cut(s)	98, 746, 975, 982, 1461, 1513, 2658, 2825, 2843
Bso31I	GGTCTC	1 cut(s)	3229
BsoBI	CYCGRG	1 cut(s)	537
Bsp119I	TTCGAA	1 cut(s)	2227
Bsp1286I	GDGCHC	3 cut(s)	1633, 1942, 2873
Bsp13I	TCCGGA	1 cut(s)	1357
Bsp1407I	TGTACA	2 cut(s)	34, 2683
Bsp1720I	GCTNAGC	1 cut(s)	1233
Bsp19I	CCATGG	3 cut(s)	1610, 2820, 3057
Bsp68I	TCGCGA	1 cut(s)	118
BspACI	CCGC	7 cut(s)	60, 193, 420, 436, 1601, 1970, 2247
BspANI	GGCC	9 cut(s)	98, 746, 975, 982, 1461, 1513, 2658, 2825, 2843
BspCNI	CTCAG	7 cut(s)	990, 1075, 1139, 2111, 2619, 2767, 3060
BspEI	TCCGGA	1 cut(s)	1357
BspFNI	CGCG	3 cut(s)	118, 1590, 1603
BspHI	TCATGA	4 cut(s)	268, 379, 985, 1330
BspLI	GGNNCC	8 cut(s)	72, 299, 866, 1018, 1641, 1829, 1911, 2086
BspMI	ACCTGC	1 cut(s)	274
BspOI	GCTAGC	1 cut(s)	2966
BspT104I	TTCGAA	1 cut(s)	2227
BspT107I	GGYRCC	1 cut(s)	70
BspTI	CTTAAG	1 cut(s)	910
BspTNI	GGTCTC	1 cut(s)	3229
BsrDI	GCAATG	3 cut(s)	62, 1656, 1862
BsrFI	RCCGGY	1 cut(s)	91
BsrGI	TGTACA	2 cut(s)	34, 2683
BsrI	ACTGG	4 cut(s)	976, 1147, 2239, 3239
BssAI	RCCGGY	1 cut(s)	91
BssECI	CCNNGG	7 cut(s)	734, 1514, 1610, 2820, 2834, 2890, 3057
BssNI	GRCGYC	2 cut(s)	71, 1177
BssSI	CACGAG	2 cut(s)	414, 2199
BssT1I	CCWWGG	4 cut(s)	1610, 2820, 2834, 3057
Bst2BI	CACGAG	2 cut(s)	414, 2199
Bst2UI	CCWGG	7 cut(s)	735, 1515, 1917, 2387, 2469, 2891, 3224
Bst6I	CTCTTC	3 cut(s)	1201, 1806, 2008
BstACI	GRCGYC	2 cut(s)	71, 1177
BstAFI	CTTAAG	1 cut(s)	910
BstAPI	GCANNNNNTGC	1 cut(s)	671
BstAUI	TGTACA	2 cut(s)	34, 2683
BstBI	TTCGAA	1 cut(s)	2227
BstC8I	GCNNGC	3 cut(s)	676, 2209, 2964
BstDSI	CCRYGG	3 cut(s)	1610, 2820, 3057
BstENI	CCTNNNNNAGG	2 cut(s)	987, 1032
BstF5I	GGATG	6 cut(s)	432, 1000, 2059, 2368, 2494, 2816
BstFNI	CGCG	3 cut(s)	118, 1590, 1603
BstH2I	RGCGCY	2 cut(s)	74, 446
BstHHI	GCGC	5 cut(s)	73, 445, 1353, 1590, 2406
BstMAI	GTCTC	3 cut(s)	59, 2763, 3229
BstMWI	GCNNNNNNNGC	4 cut(s)	451, 671, 1094, 2464
BstNI	CCWGG	7 cut(s)	735, 1515, 1917, 2387, 2469, 2891, 3224
BstNSI	RCATGY	1 cut(s)	2211
BstSCI	CCNGG	7 cut(s)	733, 1513, 1915, 2385, 2467, 2889, 3222
BstSLI	GKGCMC	1 cut(s)	1942
BstUI	CGCG	3 cut(s)	118, 1590, 1603
BstV1I	GCAGC	7 cut(s)	75, 466, 708, 1097, 2191, 2513, 3028
BstV2I	GAAGAC	1 cut(s)	2888
BstX2I	RGATCY	5 cut(s)	523, 1827, 1909, 2071, 3157
BstXI	CCANNNNNNTGG	1 cut(s)	1557
BstYI	RGATCY	5 cut(s)	523, 1827, 1909, 2071, 3157
Bsu36I	CCTNAGG	1 cut(s)	977
BsuI	GTATCC	1 cut(s)	2393
BsuRI	GGCC	9 cut(s)	98, 746, 975, 982, 1461, 1513, 2658, 2825, 2843
BtgI	CCRYGG	3 cut(s)	1610, 2820, 3057
BtsCI	GGATG	6 cut(s)	432, 1000, 2059, 2368, 2494, 2816
BtsI	GCAGTG	1 cut(s)	464
BtsIMutI	CAGTG	9 cut(s)	464, 768, 833, 1070, 1624, 2106, 2246, 2929, 3246
BtuMI	TCGCGA	1 cut(s)	118
BveI	ACCTGC	1 cut(s)	274
Cac8I	GCNNGC	3 cut(s)	676, 2209, 2964
CaiI	CAGNNNCTG	1 cut(s)	2507
CciI	TCATGA	4 cut(s)	268, 379, 985, 1330
CfoI	GCGC	5 cut(s)	73, 445, 1353, 1590, 2406
Cfr10I	RCCGGY	1 cut(s)	91
Cfr13I	GGNCC	7 cut(s)	593, 1360, 1640, 2104, 2195, 2244, 2657
CpoI	CGGWCCG	1 cut(s)	1360
Csp6I	GTAC	6 cut(s)	35, 175, 335, 2557, 2684, 3145
CspCI	CAANNNNNGTGG	2 cut(s)	1046, 1081
CspI	CGGWCCG	1 cut(s)	1360
CviQI	GTAC	6 cut(s)	35, 175, 335, 2557, 2684, 3145
DinI	GGCGCC	1 cut(s)	72
DraI	TTTAAA	1 cut(s)	1287
DrdI	GACNNNNNNGTC	1 cut(s)	2193
DseDI	GACNNNNNNGTC	1 cut(s)	2193
EaeI	YGGCCR	4 cut(s)	96, 1459, 1511, 2823
Eam1104I	CTCTTC	3 cut(s)	1201, 1806, 2008
EarI	CTCTTC	3 cut(s)	1201, 1806, 2008
EciI	GGCGGA	1 cut(s)	425
Eco130I	CCWWGG	4 cut(s)	1610, 2820, 2834, 3057
Eco147I	AGGCCT	1 cut(s)	982
Eco31I	GGTCTC	1 cut(s)	3229
Eco32I	GATATC	2 cut(s)	136, 1983
Eco47I	GGWCC	6 cut(s)	593, 1360, 1640, 2104, 2195, 2244
Eco47III	AGCGCT	1 cut(s)	444
Eco57I	CTGAAG	3 cut(s)	221, 2286, 2670
Eco81I	CCTNAGG	1 cut(s)	977
Eco88I	CYCGRG	1 cut(s)	537
EcoNI	CCTNNNNNAGG	2 cut(s)	987, 1032
EcoO109I	RGGNCCY	2 cut(s)	1640, 2195
EcoRI	GAATTC	2 cut(s)	532, 1840
EcoRII	CCWGG	7 cut(s)	733, 1513, 1915, 2385, 2467, 2889, 3222
EcoRV	GATATC	2 cut(s)	136, 1983
EcoT14I	CCWWGG	4 cut(s)	1610, 2820, 2834, 3057
EcoT22I	ATGCAT	1 cut(s)	2526
EgeI	GGCGCC	1 cut(s)	72
EheI	GGCGCC	1 cut(s)	72
ErhI	CCWWGG	4 cut(s)	1610, 2820, 2834, 3057
Esp3I	CGTCTC	1 cut(s)	59
FalI	AAGNNNNNCTT	6 cut(s)	1165, 1197, 2571, 2603, 3063, 3095
FaqI	GGGAC	2 cut(s)	1653, 3201
FauI	CCCGC	2 cut(s)	53, 1977
FauNDI	CATATG	1 cut(s)	2635
FbaI	TGATCA	1 cut(s)	2158
Fnu4HI	GCNGC	8 cut(s)	89, 420, 455, 697, 1086, 2205, 2502, 3042
FokI	GGATG	6 cut(s)	419, 987, 2066, 2375, 2501, 2803
Fsp4HI	GCNGC	8 cut(s)	89, 420, 455, 697, 1086, 2205, 2502, 3042
GlaI	GCGC	5 cut(s)	72, 444, 1352, 1589, 2405
GluI	GCNGC	8 cut(s)	89, 420, 455, 697, 1086, 2205, 2502, 3042
GsaI	CCCAGC	4 cut(s)	443, 494, 1945, 2551
HaeII	RGCGCY	2 cut(s)	74, 446
HaeIII	GGCC	9 cut(s)	98, 746, 975, 982, 1461, 1513, 2658, 2825, 2843
HapII	CCGG	6 cut(s)	52, 92, 129, 1358, 2826, 2844
HhaI	GCGC	5 cut(s)	73, 445, 1353, 1590, 2406
Hin1I	GRCGYC	2 cut(s)	71, 1177
Hin6I	GCGC	5 cut(s)	71, 443, 1351, 1588, 2404
HinP1I	GCGC	5 cut(s)	71, 443, 1351, 1588, 2404
HincII	GTYRAC	1 cut(s)	1966
HindII	GTYRAC	1 cut(s)	1966
HindIII	AAGCTT	1 cut(s)	1316
HpaI	GTTAAC	1 cut(s)	1966
HpaII	CCGG	6 cut(s)	52, 92, 129, 1358, 2826, 2844
HphI	GGTGA	5 cut(s)	496, 634, 1091, 1502, 1851
Hpy166II	GTNNAC	6 cut(s)	37, 1624, 1966, 2186, 2686, 2756
Hpy8I	GTNNAC	6 cut(s)	37, 1624, 1966, 2186, 2686, 2756
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	7 cut(s)	586, 602, 983, 1512, 1513, 2645, 2833
HpyCH4IV	ACGT	4 cut(s)	247, 874, 1177, 1338
HpyF10VI	GCNNNNNNNGC	4 cut(s)	451, 671, 1094, 2464
HpySE526I	ACGT	4 cut(s)	247, 874, 1177, 1338
Hsp92I	GRCGYC	2 cut(s)	71, 1177
HspAI	GCGC	5 cut(s)	71, 443, 1351, 1588, 2404
KasI	GGCGCC	1 cut(s)	70
Kpn2I	TCCGGA	1 cut(s)	1357
Ksp22I	TGATCA	1 cut(s)	2158
KspAI	GTTAAC	1 cut(s)	1966
LmnI	GCTCC	6 cut(s)	303, 805, 1030, 1585, 1711, 3115
Lsp1109I	GCAGC	7 cut(s)	75, 466, 708, 1097, 2191, 2513, 3028
LweI	GCATC	4 cut(s)	218, 477, 674, 1201
MaeII	ACGT	4 cut(s)	247, 874, 1177, 1338
MaeIII	GTNAC	5 cut(s)	195, 1389, 1490, 1652, 1857
MfeI	CAATTG	3 cut(s)	162, 703, 3093
MflI	RGATCY	5 cut(s)	523, 1827, 1909, 2071, 3157
MhlI	GDGCHC	3 cut(s)	1633, 1942, 2873
MlsI	TGGCCA	2 cut(s)	98, 1513
MluNI	TGGCCA	2 cut(s)	98, 1513
Mly113I	GGCGCC	1 cut(s)	71
MlyI	GAGTC	4 cut(s)	1063, 2765, 2933, 3183
MmeI	TCCRAC	1 cut(s)	2916
Mox20I	TGGCCA	2 cut(s)	98, 1513
Mph1103I	ATGCAT	1 cut(s)	2526
MroI	TCCGGA	1 cut(s)	1357
MroXI	GAANNNNTTC	3 cut(s)	1596, 2644, 2851
MscI	TGGCCA	2 cut(s)	98, 1513
MslI	CAYNNNNRTG	1 cut(s)	2212
Msp20I	TGGCCA	2 cut(s)	98, 1513
MspA1I	CMGCKG	1 cut(s)	2249
MspCI	CTTAAG	1 cut(s)	910
MspI	CCGG	6 cut(s)	52, 92, 129, 1358, 2826, 2844
MspR9I	CCNGG	7 cut(s)	735, 1515, 1917, 2387, 2469, 2891, 3224
MunI	CAATTG	3 cut(s)	162, 703, 3093
MvaI	CCWGG	7 cut(s)	735, 1515, 1917, 2387, 2469, 2891, 3224
MvnI	CGCG	3 cut(s)	118, 1590, 1603
MwoI	GCNNNNNNNGC	4 cut(s)	451, 671, 1094, 2464
NarI	GGCGCC	1 cut(s)	71
NcoI	CCATGG	3 cut(s)	1610, 2820, 3057
NdeI	CATATG	1 cut(s)	2635
NheI	GCTAGC	1 cut(s)	2962
NlaIV	GGNNCC	8 cut(s)	72, 299, 866, 1018, 1641, 1829, 1911, 2086
NmuCI	GTSAC	4 cut(s)	1389, 1490, 1652, 1857
NruI	TCGCGA	1 cut(s)	118
NsiI	ATGCAT	1 cut(s)	2526
NspI	RCATGY	1 cut(s)	2211
NspV	TTCGAA	1 cut(s)	2227
PaeI	GCATGC	1 cut(s)	2211
PaeR7I	CTCGAG	1 cut(s)	537
PagI	TCATGA	4 cut(s)	268, 379, 985, 1330
PceI	AGGCCT	1 cut(s)	982
PdmI	GAANNNNTTC	3 cut(s)	1596, 2644, 2851
PflMI	CCANNNNNTGG	3 cut(s)	359, 511, 2547
PfoI	TCCNGGA	1 cut(s)	2385
PkrI	GCNGC	8 cut(s)	90, 421, 456, 698, 1087, 2206, 2503, 3043
PleI	GAGTC	4 cut(s)	1062, 2765, 2933, 3183
PluTI	GGCGCC	1 cut(s)	74
PpsI	GAGTC	4 cut(s)	1062, 2765, 2933, 3183
PpuMI	RGGWCCY	2 cut(s)	1640, 2195
PshBI	ATTAAT	2 cut(s)	963, 2742
PsiI	TTATAA	1 cut(s)	1530
Psp1406I	AACGTT	1 cut(s)	1338
Psp5II	RGGWCCY	2 cut(s)	1640, 2195
Psp6I	CCWGG	7 cut(s)	733, 1513, 1915, 2385, 2467, 2889, 3222
PspFI	CCCAGC	4 cut(s)	439, 490, 1941, 2547
PspGI	CCWGG	7 cut(s)	733, 1513, 1915, 2385, 2467, 2889, 3222
PspN4I	GGNNCC	8 cut(s)	72, 299, 866, 1018, 1641, 1829, 1911, 2086
PspPI	GGNCC	7 cut(s)	593, 1360, 1640, 2104, 2195, 2244, 2657
PspPPI	RGGWCCY	2 cut(s)	1640, 2195
PsrI	GAACNNNNNNTAC	4 cut(s)	167, 199, 3128, 3160
PstNI	CAGNNNCTG	1 cut(s)	2507
PsuI	RGATCY	5 cut(s)	523, 1827, 1909, 2071, 3157
RruI	TCGCGA	1 cut(s)	118
RsaI	GTAC	6 cut(s)	36, 176, 336, 2558, 2685, 3146
RsaNI	GTAC	6 cut(s)	35, 175, 335, 2557, 2684, 3145
RseI	CAYNNNNRTG	1 cut(s)	2212
Rsr2I	CGGWCCG	1 cut(s)	1360
RsrII	CGGWCCG	1 cut(s)	1360
SatI	GCNGC	8 cut(s)	89, 420, 455, 697, 1086, 2205, 2502, 3042
Sau96I	GGNCC	7 cut(s)	593, 1360, 1640, 2104, 2195, 2244, 2657
ScaI	AGTACT	1 cut(s)	2558
SchI	GAGTC	4 cut(s)	1063, 2765, 2933, 3183
ScrFI	CCNGG	7 cut(s)	735, 1515, 1917, 2387, 2469, 2891, 3224
SduI	GDGCHC	3 cut(s)	1633, 1942, 2873
SfaNI	GCATC	4 cut(s)	218, 477, 674, 1201
SfoI	GGCGCC	1 cut(s)	72
Sfr274I	CTCGAG	1 cut(s)	537
SfuI	TTCGAA	1 cut(s)	2227
SinI	GGWCC	6 cut(s)	593, 1360, 1640, 2104, 2195, 2244
SlaI	CTCGAG	1 cut(s)	537
SmiMI	CAYNNNNRTG	1 cut(s)	2212
SmlI	CTYRAG	5 cut(s)	537, 910, 1890, 3034, 3273
SmoI	CTYRAG	5 cut(s)	537, 910, 1890, 3034, 3273
SphI	GCATGC	1 cut(s)	2211
SseBI	AGGCCT	1 cut(s)	982
SsiI	CCGC	7 cut(s)	60, 193, 420, 436, 1601, 1970, 2247
SspDI	GGCGCC	1 cut(s)	70
SspI	AATATT	1 cut(s)	2740
StuI	AGGCCT	1 cut(s)	982
StyD4I	CCNGG	7 cut(s)	733, 1513, 1915, 2385, 2467, 2889, 3222
StyI	CCWWGG	4 cut(s)	1610, 2820, 2834, 3057
TaiI	ACGT	4 cut(s)	250, 877, 1180, 1341
TaqI	TCGA	6 cut(s)	472, 538, 2227, 2301, 2536, 2811
TatI	WGTACW	6 cut(s)	34, 174, 334, 2556, 2683, 3144
TauI	GCSGC	1 cut(s)	422
TscAI	CASTG	9 cut(s)	464, 775, 833, 1070, 1631, 2106, 2246, 2929, 3246
TseFI	GTSAC	4 cut(s)	1389, 1490, 1652, 1857
TseI	GCWGC	7 cut(s)	88, 454, 696, 1085, 2204, 2501, 3041
Tsp45I	GTSAC	4 cut(s)	1389, 1490, 1652, 1857
TspGWI	ACGGA	2 cut(s)	877, 3153
TspRI	CASTG	9 cut(s)	464, 775, 833, 1070, 1631, 2106, 2246, 2929, 3246
Van91I	CCANNNNNTGG	3 cut(s)	359, 511, 2547
Vha464I	CTTAAG	1 cut(s)	910
VpaK11BI	GGWCC	6 cut(s)	593, 1360, 1640, 2104, 2195, 2244
VspI	ATTAAT	2 cut(s)	963, 2742
XagI	CCTNNNNNAGG	2 cut(s)	987, 1032
XapI	RAATTY	8 cut(s)	263, 532, 551, 638, 1377, 1840, 2980, 3257
XbaI	TCTAGA	1 cut(s)	2029
XceI	RCATGY	1 cut(s)	2211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2246
XhoI	CTCGAG	1 cut(s)	537
XmnI	GAANNNNTTC	3 cut(s)	1596, 2644, 2851
ZraI	GACGTC	1 cut(s)	1178
ZrmI	AGTACT	1 cut(s)	2558
Zsp2I	ATGCAT	1 cut(s)	2526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.