Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001577

Physical Location & Seq

Genomic Coordinates Forward (+)

42512337 .. 42520984

Gene Structure 8648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG254000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3240 bp

ATGGAATCGGAGCAGTTGATATCATCGACGGGGAGCGGTTCCCGGTATATGCAAATGCGATCGGAGCAGTTAACGTCGCCGTCGTCGCTGTTATCGTTCCGGCACTCGTCCTTCGAGTTGCCCCCGCGGATTTTCGACGAGTTGCCCAGCGCCACCATCGTCTCCGTCTCCCGCCCCGACGCCGGCGATATCAGCCCCATGCTTCTCTCCTACACTATCGAGTTCCAATACAAGCAGTTTAAGTGGCGCCTATTGAAGAAAGCATCACATGTATTCTACTTGCATTTTGCGTTGAAGAAACGGGCATTTATTGAGGAAATTCACGAAAAGCAGGAACAGGTTAAAGAATGGCTTCAAAATCTAGGAATAGGAGATCATACGGACGTGGTGCACGATGATGAGGATATTGATGATGAGACTGTTCCCCTGCATCACAATGATGAAAGTGCTAAAAACAGAGATGTTCCATCTAGTGCCGCTCTACCAATCATTCGGCCAGCCCTTGGTAGGCAGCAATCCATTTCGGACAGATCAAAGATTGCAATGCAAGGATATCTTAATCACTTTCTTGGAAACATGGACATTGTGAACTCTCAAGAGGTCTGCAAGTTTTTGGAGGTCTCTATGCTATCATTTTCCCCAGAATATGGCCCTAAGCTGAAAGAAGATTTTGTAATGGTGAAACATCTACCAAAATTGCCAAAGAATGATCCTTCCAGGAAATGTTGCTCATGTCGTTGGTTCAGTTGTTGTAATGACAACTGGCAAAAGGTTTGGGCTGTATTAAAACCAGGATTCTTGGCCTTTCTGGCAGATCCTTTTGATACCCAACCTTTAGACATAATAGTATTTGATGTACTACCAGCCTCGGATGGTAATGGGGATGGCCGTGTATCACTAGCGAAAGAGATAAAAGATAGAAATCCACTACGCCATGCATTTCAGGTGGCTTGTGGAAGCCGGAGCATTAAATTAAGAGTTAGGAGTAGTAGTAAAGTTAAAGATTGGGTAGCCTCAATCAATGATGCGGGACTCAGGCCTCCTGAAGGTTGGTGTCATCCTCACCGCTTTGGCTCCTTTGCGCCTCCAAGAGGCTTGACTGAAGATGGTAGTCAGGCTCAATGGTTTGTAGATGGTCGGGCGGCATTTGAAGCTATTGCTTCTGCAATTGAGGATGCAAAATCAGAGATATTTATTTGTGGTTGGTGGCTGTGTCCAGAATTGTACATGCGGCGTCCGTTTCTTACTCATGCTTCTTCTAAACTTGATTCTCTGCTGGAAGCAAAAGCTAAGGAAGGGGTTCAGATTTACATTCTTCTCTATAAAGAGGTAGCTCTTGCTCTGAAAATCAACAGCGTTTATAGCAAGAGAAAACTTCTTGGGATTCATGAGAATGTGAGGGTATTACGTTATCCTGACCACTTCTCTAGTGGTGTTTACTTATGGTCCCACCATGAAAAACTTGTCATTGTTGATCATCAGATTTGCTTTGTTGGAGGACTTGATTTATGCTTTGGTCGTTATGATACTGCTGAACATAAAGTGGGTGACTGCCCTCCTAACATTTGGCCTGGAAAGGACTATTACAACCCCAGGGAATCTGAACCAAACTCGTGGGAGGATACAATGCGAGATGAGTTGGACCGTGAAAAATATCCTCGCATGCCTTGGCATGATGTCCACTGTGCTATTTGGGGACCTCCTTGCCGTGATGTAGCTAGGCATTTCGTTCAGCGGTGGAACTATGCAAAGAGAAATAAAGCTCCAAACGAGCAGGCAATTCCACTACTTATGCCACAACAGCACATGGTAATTCCTCATTACATGGGGAAAAGCTCAGATGTGGAGATTGAAAATGAGAATGCCAGCAATAGTAAAGACATTAAAAGGCAGGATTCCTTTTCGTCGAAATCATCCTATCAGGATATCCCCTTGCTTATACCTCAAGAGGCTGATGGGTTGAATGAAAACCCAAGACCATATGGGGTGGACTCTCCTCATTGCCTCGATCAGTCAAGCAGAGTTGGTAACAATCTTGCTTTCCCTTTTCGGAAGACAAAAATTGAACCAGTAGGTCCAGATACGCCAATGAGGGGATTTGTAGATGACTTTGAATCTATGGATCGACATGGGAAATTGGCTTCAGACGTGGTGGCACATCCTGCAATCACAAATTCAGATCCAGAGTGGTGGGAAATACAAGAACGGGGAAATAAGGGTGGTTTCACAGATGAATCAGGACAAGTTGGTCCTTCTAGTTCATGCCGTTGTCAGGTTATCAGAAGTGTCAGTCAGTGGTCAGCAGGAACAAGCCAAGTTGAAGATAGCATTCACAGTGCTTATTGTTCTCTTATCGATAAAGCTGAGCACTTTATTTACATTGAGAATCAATTTTTCATCTCAGGTCTTTCAGGAGATGAAATAATACGGAATCGTGTGTTAGAAGCATTATTCCGTCGTATTATGCGAGCATACAATGATAAGAAGTGTTTTAGAGTTATAATTGTCATACCACTCGTACCCGGTTTTCAAGGTGGTTTGGATGATGCTGGTGCGGCATCTGTGAGAGCTGTTATGCATTGGCAATATCGAACCATTTGCAGAGGGCATAATTCAATTCTACACAATTTATATGAACTTCTTGGTCCAAAGACACACGACTACATTTCTTTCTATGGCCTTAGAGCCTATGGTAAACTCTTTGATGGCGGTCCTGTGGCCTCCAGTCAGATTGGTCTTCTTATTGAAGACAAAGAGTTGGTTAATTCATATATGGGAGGAAAACCATGGAAGGCTGGAAAATTTTCATTGAGTCTTCGCATGTCGCTATGGTCTGAACATCTTGGTATTCGCGCTGGAGAGATGGACCAAATAATCGATCCAACTGTTGATTCAATTTACAAGGATATATGGATGGCGACAGCTAAGGCAAATACCACCATCTACCAAGATGTCTTTTCCTGTGTACCAAATGATTTTATACATTCTAGAGCTGCATTTAGACAAAACATAGCCTTTTGGAAGGAGAAGGTAGGGCACACAACCATTGATTTAGGAATTGCTCCTGGAACGCTAGAGTCATATCAAAATGGAGATGTCAAGAAAGCTGATCCCATGGAGAGGTTAGAATCTATAAAGGGGCATCTTGTTTCTTTCCCTTTGGATTTCATGTTGAAAGAAGATTTGAGACCTGTGTTCAATGAGAGTGAGTATTATGCGTCGCCTCAAGTATTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0006629 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0016298 GO:0016787 GO:0016788 GO:0022622 GO:0032501 GO:0032502 GO:0042578 GO:0044238 GO:0048364 GO:0048731 GO:0048856 GO:0071704 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

PLDc PLDc_2

Protein Analysis

1079

Amino Acids

122.59

Weight (kDa)

6.25

Isoelectric Point (pI)

46.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLDc	PF00614	480 - 507	9.3e-08	Phospholipase D Active site motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16785 AT3G16785 AT3G16785 AT3G16785 AT3G16785 AT3G16785
fragaria_vesca	FvH4_4g18810 FvH4_6g06940 FvH4_6g06940 FvH4_6g06940
malus_domestica	MD04G1197500.v1.1 MD12G1210300.v1.1 MD13G1162600.v1.1 MD16G1162400.v1.1
prunus_persica	Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.6G317900_v2.0.a1 Prupe.6G317900_v2.0.a1 Prupe.6G317900_v2.0.a1
pyrus_communis	pycom04g17480 pycom13g13890 pycom16g13770
rosa_chinensis	RchiOBHm_Chr3g0456481 RchiOBHm_Chr4g0423621
rosa_laevigata	RLG00000007541 RLG00000025302
rosa_multiflora	Rmu_co8413375.1_g000001 Rmu_sc0000464.1_g000017 Rmu_sc0002607.1_g000011 Rmu_sc0008373.1_g000012 Rmu_sc0016309.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365830 Rroxscaffold_6G00422720
rosa_rugosa	Rorug03G0013400 Rorug03G0013400 Rorug03G0013400 Rorug04G0189100
rosa_samantha	Rh3AG073700 Rh3BG075600 Rh3DG076900 Rh4AG248700 Rh4BG254000 Rh4DG249000
rosa_wichuraiana	Rw3G006320 Rw4G021300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2501
AasI	GACNNNNNNGTC	1 cut(s)	2247
AccB1I	GGYRCC	1 cut(s)	246
AccB7I	CCANNNNNTGG	2 cut(s)	503, 647
AccBSI	CCGCTC	2 cut(s)	36, 479
AccII	CGCG	2 cut(s)	127, 2853
AclWI	GGATC	6 cut(s)	704, 809, 2130, 2174, 2873, 3104
AcoI	YGGCCR	2 cut(s)	494, 886
AcsI	RAATTY	3 cut(s)	318, 2173, 2801
AcuI	CTGAAG	3 cut(s)	1065, 1122, 2127
AcyI	GRCGYC	3 cut(s)	180, 247, 1234
AfaI	GTAC	4 cut(s)	858, 1226, 2520, 2967
AfiI	CCNNNNNNNGG	9 cut(s)	182, 503, 507, 647, 1046, 1091, 2093, 2272, 3120
AflIII	ACRYGT	1 cut(s)	268
AjiI	CACGTC	2 cut(s)	385, 2149
AjnI	CCWGG	5 cut(s)	716, 790, 1570, 1592, 3064
AjuI	GAANNNNNNNTTGG	2 cut(s)	2875, 2907
Alw21I	GWGCWC	2 cut(s)	393, 2370
Alw26I	GTCTC	5 cut(s)	166, 172, 410, 625, 3181
Alw44I	GTGCAC	1 cut(s)	389
AlwI	GGATC	6 cut(s)	704, 809, 2130, 2174, 2873, 3104
AoxI	GGCC	8 cut(s)	494, 649, 801, 886, 1037, 1568, 2677, 2718
ApaLI	GTGCAC	1 cut(s)	389
ApeKI	GCWGC	2 cut(s)	511, 2993
ApoI	RAATTY	3 cut(s)	318, 2173, 2801
Asp700I	GAANNNNTTC	3 cut(s)	351, 1299, 2803
AspLEI	GCGC	4 cut(s)	152, 249, 1084, 2855
AspS9I	GGNCC	9 cut(s)	650, 1446, 1642, 1697, 2075, 2249, 2645, 2711, 2866
AsuC2I	CCSGG	2 cut(s)	43, 2523
AsuHPI	GGTGA	3 cut(s)	691, 1055, 1559
AvaII	GGWCC	8 cut(s)	1446, 1642, 1697, 2075, 2249, 2645, 2711, 2866
BaeGI	GKGCMC	2 cut(s)	393, 3039
BanI	GGYRCC	1 cut(s)	246
BauI	CACGAG	1 cut(s)	1612
BbsI	GAAGAC	4 cut(s)	2060, 2729, 2754, 2807
Bbv12I	GWGCWC	2 cut(s)	393, 2370
BbvI	GCAGC	2 cut(s)	523, 2980
BceAI	ACGGC	4 cut(s)	64, 873, 1692, 2250
BcgI	CGANNNNNNTGC	2 cut(s)	2580, 2614
BciT130I	CCWGG	5 cut(s)	718, 792, 1572, 1594, 3066
BciVI	GTATCC	1 cut(s)	1615
BclI	TGATCA	1 cut(s)	1474
BcnI	CCSGG	2 cut(s)	43, 2523
BcoDI	GTCTC	5 cut(s)	166, 172, 410, 625, 3181
BfaI	CTAG	8 cut(s)	362, 471, 899, 1428, 1719, 2256, 2988, 3074
BfoI	RGCGCY	2 cut(s)	153, 250
BfuI	GTATCC	1 cut(s)	1615
BglI	GCCNNNNNGGC	1 cut(s)	809
BisI	GCNGC	6 cut(s)	477, 512, 1143, 1232, 2556, 2994
BlpI	GCTNAGC	1 cut(s)	2364
BlsI	GCNGC	6 cut(s)	478, 513, 1144, 1233, 2557, 2995
Bme1390I	CCNGG	7 cut(s)	43, 718, 792, 1572, 1594, 2523, 3066
Bme18I	GGWCC	8 cut(s)	1446, 1642, 1697, 2075, 2249, 2645, 2711, 2866
BmgBI	CACGTC	2 cut(s)	385, 2149
BmgT120I	GGNCC	9 cut(s)	650, 1446, 1642, 1697, 2075, 2249, 2645, 2711, 2866
BmiI	GGNNCC	5 cut(s)	40, 248, 1075, 1448, 1698
BmrFI	CCNGG	7 cut(s)	43, 718, 792, 1572, 1594, 2523, 3066
BmsI	GCATC	7 cut(s)	272, 439, 1015, 1165, 2536, 2567, 3151
BpiI	GAAGAC	4 cut(s)	2060, 2729, 2754, 2807
BpmI	CTGGAG	2 cut(s)	2707, 2877
Bpu10I	CCTNAGC	3 cut(s)	654, 1290, 2925
Bpu1102I	GCTNAGC	1 cut(s)	2364
BpuEI	CTTGAG	3 cut(s)	579, 1929, 3210
BpuMI	CCSGG	2 cut(s)	43, 2523
Bsa29I	ATCGAT	2 cut(s)	2355, 2877
BsaBI	GATNNNNATC	1 cut(s)	921
BsaHI	GRCGYC	3 cut(s)	180, 247, 1234
BsaI	GGTCTC	2 cut(s)	625, 3181
BsaJI	CCNNGG	8 cut(s)	125, 502, 867, 1592, 1593, 1667, 2786, 3114
BsaXI	ACNNNNNCTCC	2 cut(s)	976, 1006
Bsc4I	CCNNNNNNNGG	9 cut(s)	182, 503, 507, 647, 1046, 1091, 2093, 2272, 3120
Bse118I	RCCGGY	1 cut(s)	182
Bse1I	ACTGG	3 cut(s)	767, 2069, 2724
Bse3DI	GCAATG	2 cut(s)	549, 1999
Bse8I	GATNNNNATC	1 cut(s)	921
BseBI	CCWGG	5 cut(s)	718, 792, 1572, 1594, 3066
BseCI	ATCGAT	2 cut(s)	2355, 2877
BseDI	CCNNGG	8 cut(s)	125, 502, 867, 1592, 1593, 1667, 2786, 3114
BseGI	GGATG	8 cut(s)	877, 889, 1057, 1180, 1913, 2158, 2548, 2919
BseJI	GATNNNNATC	1 cut(s)	921
BseLI	CCNNNNNNNGG	9 cut(s)	182, 503, 507, 647, 1046, 1091, 2093, 2272, 3120
BseMI	GCAATG	2 cut(s)	549, 1999
BseMII	CTCAG	4 cut(s)	1048, 1851, 2355, 2415
BseNI	ACTGG	3 cut(s)	767, 2069, 2724
BseRI	GAGGAG	1 cut(s)	1986
BseSI	GKGCMC	2 cut(s)	393, 3039
BseXI	GCAGC	2 cut(s)	523, 2980
BseYI	CCCAGC	1 cut(s)	146
Bsh1236I	CGCG	2 cut(s)	127, 2853
Bsh1285I	CGRYCG	1 cut(s)	62
BshFI	GGCC	8 cut(s)	496, 651, 803, 888, 1039, 1570, 2679, 2720
BshNI	GGYRCC	1 cut(s)	246
BshVI	ATCGAT	2 cut(s)	2355, 2877
BsiEI	CGRYCG	1 cut(s)	62
BsiHKAI	GWGCWC	2 cut(s)	393, 2370
BsiSI	CCGG	5 cut(s)	43, 100, 183, 961, 2523
BslFI	GGGAC	3 cut(s)	1044, 1432, 1710
BslI	CCNNNNNNNGG	9 cut(s)	182, 503, 507, 647, 1046, 1091, 2093, 2272, 3120
BsmAI	GTCTC	5 cut(s)	166, 172, 410, 625, 3181
BsmBI	CGTCTC	2 cut(s)	166, 172
BsmFI	GGGAC	3 cut(s)	1044, 1432, 1710
BsmI	GAATGC	2 cut(s)	1867, 2328
BsnI	GGCC	8 cut(s)	496, 651, 803, 888, 1039, 1570, 2679, 2720
Bso31I	GGTCTC	2 cut(s)	625, 3181
Bsp1286I	GDGCHC	3 cut(s)	393, 2370, 3039
Bsp1407I	TGTACA	1 cut(s)	1224
Bsp1720I	GCTNAGC	1 cut(s)	2364
Bsp19I	CCATGG	2 cut(s)	2786, 3114
BspANI	GGCC	8 cut(s)	496, 651, 803, 888, 1039, 1570, 2679, 2720
BspCNI	CTCAG	4 cut(s)	1047, 1850, 2356, 2414
BspDI	ATCGAT	2 cut(s)	2355, 2877
BspFNI	CGCG	2 cut(s)	127, 2853
BspHI	TCATGA	1 cut(s)	1387
BspLI	GGNNCC	5 cut(s)	40, 248, 1075, 1448, 1698
BspPI	GGATC	6 cut(s)	704, 809, 2130, 2174, 2873, 3104
BspT107I	GGYRCC	1 cut(s)	246
BspTNI	GGTCTC	2 cut(s)	625, 3181
BsrBI	CCGCTC	2 cut(s)	36, 479
BsrDI	GCAATG	2 cut(s)	549, 1999
BsrFI	RCCGGY	1 cut(s)	182
BsrGI	TGTACA	1 cut(s)	1224
BsrI	ACTGG	3 cut(s)	767, 2069, 2724
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	8 cut(s)	125, 502, 867, 1592, 1593, 1667, 2786, 3114
BssNI	GRCGYC	3 cut(s)	180, 247, 1234
BssSI	CACGAG	1 cut(s)	1612
BssT1I	CCWWGG	4 cut(s)	502, 1667, 2786, 3114
Bst2BI	CACGAG	1 cut(s)	1612
Bst2UI	CCWGG	5 cut(s)	718, 792, 1572, 1594, 3066
Bst4CI	ACNGT	5 cut(s)	421, 1646, 1685, 2336, 2887
BstACI	GRCGYC	3 cut(s)	180, 247, 1234
BstAPI	GCANNNNNTGC	1 cut(s)	2162
BstAUI	TGTACA	1 cut(s)	1224
BstC8I	GCNNGC	6 cut(s)	184, 498, 1664, 1776, 1867, 2469
BstDEI	CTNAG	8 cut(s)	654, 1034, 1290, 1837, 2364, 2401, 2681, 2925
BstDSI	CCRYGG	3 cut(s)	125, 2786, 3114
BstENI	CCTNNNNNAGG	2 cut(s)	1044, 1089
BstF5I	GGATG	8 cut(s)	877, 889, 1057, 1180, 1913, 2158, 2548, 2919
BstFNI	CGCG	2 cut(s)	127, 2853
BstH2I	RGCGCY	2 cut(s)	153, 250
BstHHI	GCGC	4 cut(s)	152, 249, 1084, 2855
BstMAI	GTCTC	5 cut(s)	166, 172, 410, 625, 3181
BstMCI	CGRYCG	1 cut(s)	62
BstMWI	GCNNNNNNNGC	9 cut(s)	64, 85, 192, 809, 1151, 1362, 1801, 2162, 2555
BstNI	CCWGG	5 cut(s)	718, 792, 1572, 1594, 3066
BstNSI	RCATGY	4 cut(s)	272, 1231, 1666, 2824
BstSCI	CCNGG	7 cut(s)	41, 716, 790, 1570, 1592, 2521, 3064
BstSLI	GKGCMC	2 cut(s)	393, 3039
BstUI	CGCG	2 cut(s)	127, 2853
BstV1I	GCAGC	2 cut(s)	523, 2980
BstV2I	GAAGAC	4 cut(s)	2060, 2729, 2754, 2807
BstX2I	RGATCY	2 cut(s)	814, 2179
BstXI	CCANNNNNNTGG	2 cut(s)	1614, 2190
BstYI	RGATCY	2 cut(s)	814, 2179
Bsu15I	ATCGAT	2 cut(s)	2355, 2877
BsuI	GTATCC	1 cut(s)	1615
BsuRI	GGCC	8 cut(s)	496, 651, 803, 888, 1039, 1570, 2679, 2720
BsuTUI	ATCGAT	2 cut(s)	2355, 2877
BtgI	CCRYGG	3 cut(s)	125, 2786, 3114
BtrI	CACGTC	2 cut(s)	385, 2149
BtsCI	GGATG	8 cut(s)	877, 889, 1057, 1180, 1913, 2158, 2548, 2919
BtsIMutI	CAGTG	3 cut(s)	1681, 2300, 2341
Cac8I	GCNNGC	6 cut(s)	184, 498, 1664, 1776, 1867, 2469
CciI	TCATGA	1 cut(s)	1387
CfoI	GCGC	4 cut(s)	152, 249, 1084, 2855
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	9 cut(s)	650, 1446, 1642, 1697, 2075, 2249, 2645, 2711, 2866
Cfr42I	CCGCGG	1 cut(s)	128
ClaI	ATCGAT	2 cut(s)	2355, 2877
CseI	GACGC	3 cut(s)	188, 1223, 3207
Csp6I	GTAC	4 cut(s)	857, 1225, 2519, 2966
CviQI	GTAC	4 cut(s)	857, 1225, 2519, 2966
DdeI	CTNAG	8 cut(s)	654, 1034, 1290, 1837, 2364, 2401, 2681, 2925
DinI	GGCGCC	1 cut(s)	248
DrdI	GACNNNNNNGTC	1 cut(s)	2247
DseDI	GACNNNNNNGTC	1 cut(s)	2247
EaeI	YGGCCR	2 cut(s)	494, 886
Eco130I	CCWWGG	4 cut(s)	502, 1667, 2786, 3114
Eco147I	AGGCCT	1 cut(s)	1039
Eco31I	GGTCTC	2 cut(s)	625, 3181
Eco32I	GATATC	4 cut(s)	21, 190, 554, 1927
Eco47I	GGWCC	8 cut(s)	1446, 1642, 1697, 2075, 2249, 2645, 2711, 2866
Eco57I	CTGAAG	3 cut(s)	1065, 1122, 2127
EcoNI	CCTNNNNNAGG	2 cut(s)	1044, 1089
EcoO109I	RGGNCCY	1 cut(s)	1697
EcoRII	CCWGG	5 cut(s)	716, 790, 1570, 1592, 3064
EcoRV	GATATC	4 cut(s)	21, 190, 554, 1927
EcoT14I	CCWWGG	4 cut(s)	502, 1667, 2786, 3114
EcoT22I	ATGCAT	2 cut(s)	940, 2580
EgeI	GGCGCC	1 cut(s)	248
EheI	GGCGCC	1 cut(s)	248
ErhI	CCWWGG	4 cut(s)	502, 1667, 2786, 3114
Esp3I	CGTCTC	2 cut(s)	166, 172
FalI	AAGNNNNNCTT	4 cut(s)	336, 368, 540, 572
FaqI	GGGAC	3 cut(s)	1044, 1432, 1710
FauI	CCCGC	3 cut(s)	132, 179, 1021
FauNDI	CATATG	1 cut(s)	1981
FbaI	TGATCA	1 cut(s)	1474
Fnu4HI	GCNGC	6 cut(s)	477, 512, 1143, 1232, 2556, 2994
FokI	GGATG	8 cut(s)	884, 896, 1044, 1187, 1900, 2145, 2555, 2926
Fsp4HI	GCNGC	6 cut(s)	477, 512, 1143, 1232, 2556, 2994
FspBI	CTAG	8 cut(s)	362, 471, 899, 1428, 1719, 2256, 2988, 3074
GlaI	GCGC	4 cut(s)	151, 248, 1083, 2854
GluI	GCNGC	6 cut(s)	477, 512, 1143, 1232, 2556, 2994
GsaI	CCCAGC	1 cut(s)	150
GsuI	CTGGAG	2 cut(s)	2707, 2877
HaeII	RGCGCY	2 cut(s)	153, 250
HaeIII	GGCC	8 cut(s)	496, 651, 803, 888, 1039, 1570, 2679, 2720
HapII	CCGG	5 cut(s)	43, 100, 183, 961, 2523
HgaI	GACGC	3 cut(s)	188, 1223, 3207
HhaI	GCGC	4 cut(s)	152, 249, 1084, 2855
Hin1I	GRCGYC	3 cut(s)	180, 247, 1234
Hin6I	GCGC	4 cut(s)	150, 247, 1082, 2853
HinP1I	GCGC	4 cut(s)	150, 247, 1082, 2853
HincII	GTYRAC	1 cut(s)	72
HindII	GTYRAC	1 cut(s)	72
HpaI	GTTAAC	1 cut(s)	72
HpaII	CCGG	5 cut(s)	43, 100, 183, 961, 2523
HphI	GGTGA	3 cut(s)	691, 1055, 1559
Hpy166II	GTNNAC	8 cut(s)	72, 391, 589, 1438, 1681, 1990, 2696, 2966
Hpy8I	GTNNAC	8 cut(s)	72, 391, 589, 1438, 1681, 1990, 2696, 2966
Hpy99I	CGWCG	9 cut(s)	31, 79, 85, 88, 140, 182, 1909, 2460, 3223
HpyAV	CCTTC	8 cut(s)	121, 723, 1040, 1289, 2262, 2785, 3016, 3022
HpyCH4III	ACNGT	5 cut(s)	421, 1646, 1685, 2336, 2887
HpyCH4IV	ACGT	4 cut(s)	74, 384, 1408, 2148
HpyF10VI	GCNNNNNNNGC	9 cut(s)	64, 85, 192, 809, 1151, 1362, 1801, 2162, 2555
HpyF3I	CTNAG	8 cut(s)	654, 1034, 1290, 1837, 2364, 2401, 2681, 2925
HpySE526I	ACGT	4 cut(s)	74, 384, 1408, 2148
Hsp92I	GRCGYC	3 cut(s)	180, 247, 1234
HspAI	GCGC	4 cut(s)	150, 247, 1082, 2853
KasI	GGCGCC	1 cut(s)	246
KroI	GCCGGC	1 cut(s)	182
KroNI	GCCGGC	1 cut(s)	184
Ksp22I	TGATCA	1 cut(s)	1474
KspAI	GTTAAC	1 cut(s)	72
KspI	CCGCGG	1 cut(s)	128
LmnI	GCTCC	7 cut(s)	10, 33, 64, 963, 1079, 1768, 3067
Lsp1109I	GCAGC	2 cut(s)	523, 2980
LweI	GCATC	7 cut(s)	272, 439, 1015, 1165, 2536, 2567, 3151
MaeI	CTAG	8 cut(s)	362, 471, 899, 1428, 1719, 2256, 2988, 3074
MaeII	ACGT	4 cut(s)	74, 384, 1408, 2148
MaeIII	GTNAC	2 cut(s)	1547, 2027
MbiI	CCGCTC	2 cut(s)	36, 479
MfeI	CAATTG	1 cut(s)	1167
MflI	RGATCY	2 cut(s)	814, 2179
MhlI	GDGCHC	3 cut(s)	393, 2370, 3039
Mly113I	GGCGCC	1 cut(s)	247
MlyI	GAGTC	4 cut(s)	1026, 1985, 2821, 3086
MmeI	TCCRAC	3 cut(s)	1474, 1620, 2906
Mph1103I	ATGCAT	2 cut(s)	940, 2580
MreI	CGCCGGCG	1 cut(s)	182
MroNI	GCCGGC	1 cut(s)	182
MroXI	GAANNNNTTC	3 cut(s)	351, 1299, 2803
MslI	CAYNNNNRTG	4 cut(s)	396, 435, 438, 1392
MspA1I	CMGCKG	2 cut(s)	127, 1735
MspI	CCGG	5 cut(s)	43, 100, 183, 961, 2523
MspR9I	CCNGG	7 cut(s)	43, 718, 792, 1572, 1594, 2523, 3066
MunI	CAATTG	1 cut(s)	1167
Mva1269I	GAATGC	2 cut(s)	1867, 2328
MvaI	CCWGG	5 cut(s)	718, 792, 1572, 1594, 3066
MvnI	CGCG	2 cut(s)	127, 2853
MwoI	GCNNNNNNNGC	9 cut(s)	64, 85, 192, 809, 1151, 1362, 1801, 2162, 2555
NaeI	GCCGGC	1 cut(s)	184
NarI	GGCGCC	1 cut(s)	247
NciI	CCSGG	2 cut(s)	43, 2523
NcoI	CCATGG	2 cut(s)	2786, 3114
NdeI	CATATG	1 cut(s)	1981
NgoMIV	GCCGGC	1 cut(s)	182
NlaIV	GGNNCC	5 cut(s)	40, 248, 1075, 1448, 1698
NmuCI	GTSAC	1 cut(s)	1547
NsiI	ATGCAT	2 cut(s)	940, 2580
NspI	RCATGY	4 cut(s)	272, 1231, 1666, 2824
PaeI	GCATGC	1 cut(s)	1666
PagI	TCATGA	1 cut(s)	1387
PasI	CCCWGGG	1 cut(s)	1593
PceI	AGGCCT	1 cut(s)	1039
PciI	ACATGT	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	4 cut(s)	80, 92, 390, 2464
PctI	GAATGC	2 cut(s)	1867, 2328
PdiI	GCCGGC	1 cut(s)	184
PdmI	GAANNNNTTC	3 cut(s)	351, 1299, 2803
PflMI	CCANNNNNTGG	2 cut(s)	503, 647
PfoI	TCCNGGA	2 cut(s)	716, 3064
PkrI	GCNGC	6 cut(s)	478, 513, 1144, 1233, 2557, 2995
Ple19I	CGATCG	1 cut(s)	62
PleI	GAGTC	4 cut(s)	1026, 1985, 2820, 3085
PluTI	GGCGCC	1 cut(s)	250
PpsI	GAGTC	4 cut(s)	1026, 1985, 2820, 3085
PpuMI	RGGWCCY	1 cut(s)	1697
PscI	ACATGT	1 cut(s)	268
PsiI	TTATAA	1 cut(s)	2501
Psp5II	RGGWCCY	1 cut(s)	1697
Psp6I	CCWGG	5 cut(s)	716, 790, 1570, 1592, 3064
PspFI	CCCAGC	1 cut(s)	146
PspGI	CCWGG	5 cut(s)	716, 790, 1570, 1592, 3064
PspN4I	GGNNCC	5 cut(s)	40, 248, 1075, 1448, 1698
PspPI	GGNCC	9 cut(s)	650, 1446, 1642, 1697, 2075, 2249, 2645, 2711, 2866
PspPPI	RGGWCCY	1 cut(s)	1697
PsuI	RGATCY	2 cut(s)	814, 2179
PvuI	CGATCG	1 cut(s)	62
RsaI	GTAC	4 cut(s)	858, 1226, 2520, 2967
RsaNI	GTAC	4 cut(s)	857, 1225, 2519, 2966
RseI	CAYNNNNRTG	4 cut(s)	396, 435, 438, 1392
SacII	CCGCGG	1 cut(s)	128
SatI	GCNGC	6 cut(s)	477, 512, 1143, 1232, 2556, 2994
Sau96I	GGNCC	9 cut(s)	650, 1446, 1642, 1697, 2075, 2249, 2645, 2711, 2866
SchI	GAGTC	4 cut(s)	1026, 1985, 2821, 3086
ScrFI	CCNGG	7 cut(s)	43, 718, 792, 1572, 1594, 2523, 3066
SduI	GDGCHC	3 cut(s)	393, 2370, 3039
SfaNI	GCATC	7 cut(s)	272, 439, 1015, 1165, 2536, 2567, 3151
SfoI	GGCGCC	1 cut(s)	248
Sfr303I	CCGCGG	1 cut(s)	128
SgrAI	CRCCGGYG	1 cut(s)	182
SgrBI	CCGCGG	1 cut(s)	128
SinI	GGWCC	8 cut(s)	1446, 1642, 1697, 2075, 2249, 2645, 2711, 2866
SmiMI	CAYNNNNRTG	4 cut(s)	396, 435, 438, 1392
SmlI	CTYRAG	3 cut(s)	594, 1944, 3225
SmoI	CTYRAG	3 cut(s)	594, 1944, 3225
SphI	GCATGC	1 cut(s)	1666
SseBI	AGGCCT	1 cut(s)	1039
SspDI	GGCGCC	1 cut(s)	246
SspMI	CTAG	8 cut(s)	362, 471, 899, 1428, 1719, 2256, 2988, 3074
StuI	AGGCCT	1 cut(s)	1039
StyD4I	CCNGG	7 cut(s)	41, 716, 790, 1570, 1592, 2521, 3064
StyI	CCWWGG	4 cut(s)	502, 1667, 2786, 3114
TaaI	ACNGT	5 cut(s)	421, 1646, 1685, 2336, 2887
TaiI	ACGT	4 cut(s)	77, 387, 1411, 2151
TatI	WGTACW	2 cut(s)	856, 1224
TauI	GCSGC	4 cut(s)	479, 1145, 1234, 2558
TscAI	CASTG	3 cut(s)	1688, 2300, 2341
TseFI	GTSAC	1 cut(s)	1547
TseI	GCWGC	2 cut(s)	511, 2993
Tsp45I	GTSAC	1 cut(s)	1547
TspGWI	ACGGA	5 cut(s)	154, 395, 1227, 2443, 2444
TspRI	CASTG	3 cut(s)	1688, 2300, 2341
Van91I	CCANNNNNTGG	2 cut(s)	503, 647
VneI	GTGCAC	1 cut(s)	389
VpaK11BI	GGWCC	8 cut(s)	1446, 1642, 1697, 2075, 2249, 2645, 2711, 2866
XagI	CCTNNNNNAGG	2 cut(s)	1044, 1089
XapI	RAATTY	3 cut(s)	318, 2173, 2801
XbaI	TCTAGA	1 cut(s)	2987
XceI	RCATGY	4 cut(s)	272, 1231, 1666, 2824
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1427
XmnI	GAANNNNTTC	3 cut(s)	351, 1299, 2803
XspI	CTAG	8 cut(s)	362, 471, 899, 1428, 1719, 2256, 2988, 3074
Zsp2I	ATGCAT	2 cut(s)	940, 2580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.