Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001577

Physical Location & Seq

Genomic Coordinates Forward (+)

45956490 .. 45964723

Gene Structure 8234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G021300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3306 bp

ATGGAATCGGAGCAGTTGATATCATCGACGGGGAGCGGTTCCCGGTATATGCAAATGCGATCGGAGCAGTTAACGTCGCCGTCGTCGCTGTTATCGTTCCGGCACTCGTCCTTCGAGCCGCCGCGGATTTTCGACGAGTTGCCCAGCGCCACCATCGTCTCCGTCTCCCGCCCCGACGCCGGCGATATCAGCCCCATGCTTCTCTCCTACACTATCGAGTTCCAATACAAGCAGTTTAAGTGGCGCCTATTGAAGAAAGCATCACAAGTATTCTACTTGCATTTTGCGTTGAAGAAACGGGCATTTATTGAGGAAATTCACGAAAAGCAGGAACAGGTTAAAGAATGGCTTCAAAATCTAGGAATAGGAGATCATACGGACGTCGTGCACGATGATGAGGATATTGATGATGAGACTGTCCCCCTGCATCACAATGATGAAAGTGCTAAAAACAGAGATGTTCCATCTAGTGCCGCTCTACCAATCATTCAGCCGGCCCTTGGTAGGCAGCAATCCATTTCGGACAGATCAAAGATTGCAATGCAAGGATATCTTAATCACTTTCTTGGAAACATGGACATTGTGAACTCTCAAGAGGTCTGCAAGTTTTTGGAGGTCTCTATGCTATCATTTTCCCCAGAATATGGCCCTAAGCTGAAAGAAGATTTTGTAATGGTGGAACATCTACCAAAATTGCCAAAGAATGATCCTTCCAGGAAATGTTGCTCGTGTCGTTGGTTCAGTTGTTGTAATGACAACTGGCAAAAGGTTTGGGCTGTATTAAAACCAGGATTCTTGGCCTTTCTGGCAGATCCTTTTGATACCCAACCTTTAGACATAATAGTATTTGATGTACTACCAGCCTCGGATGGTAATGGGGATGGCCGTGTATCACTAGCGAAAGAGATAAAAGATAGAAATCCACTACGCCATGCCTTTCAGGTGGCTTGTGGAAGCCGGAGCATTAAATTAAGAGTTAGGAGTAGTAGTAAAGTTAAAGATTGGGTAGCGTCAATCAATGATGCGGGACTCAGGCCTCCTGAAGGTTGGTGTCATCCTCACCGCTTTGGCTCCTTTGCGCCTCCAAGAGGCTTGACTGAAGATGGTAGTCAGGCTCAATGGTTTGTAGATGGTCGGGCGGCATTTGAAGCTATTGCTTCTGCAATTGAGGCTGCAAAATCAGAGATATTTATTTGTGGTTGGTGGCTGTGTCCAGAATTGTACATGCGGCGTCCGTTTCTTACTCATGCTTCTTCTAAACTTGATTCTCTGCTGGAAGCAAAAGCTAAGGAAGGGGTTCAGATTTACATTCTTCTCTATAAAGAGGTAGCTCTTGCTCTGAAAATCAACAGCGTTTATAGCAAGAGAAAACTTCTTGGGATTCATGAGAATGTGAGGGTATTACGTTATCCTGACCACTTCTCTAGTGGTGTTTACTTATGGTCCCACCATGAAAAACTTGTCATTGTTGATCATCAGATTTGCTTTGTTGGAGGACTTGATTTATGCTTTGGTCGTTATGATACTGCTGAACATAAAGTGGGTGACTGCCCTCCTAACATTTGGCCTGGAAAGGACTATTACAACCCCAGGGAATCTGAACCAAACTCATGGGAGGATACAATGAGAGATGAGTTGGACCGTGAAAAATATCCTCGCATGCCTTGGCATGATGTCCACTGTGCTATTTGGGGACCTCCTTGCCGTGATGTAGCTAGGCATTTCGTTCAGCGGTGGAACTATGCAAAGAGAAATAAAGCTCCAAATGAGCAGGCAATTCCACTACTTATGCCGCAACAGCACATGGTAATTCCTCATTACATGGGGAAAAGCTCAGATGTGGAGATTGAAAATGAGAATGCCAGCAATAGTAAAGACATTAAAAGGCAGGATTCCTTTTCGTCGAAATCATCCTATCAGGATATCCCCTTGCTTATACCTCAAGAGGCTGATGGGTTGAATGAAAACCCTAGACCATATGGGGTGGACTCTGCTCATTGCTTCGATCAGCCAAGCAGAGTTGGTAACAATCTTGCTTTCCCTTTTCGGAAGACAAAAATTGAACCAGTAGGTCCAGATACGCCAATGAGGGGATTTGTAGATGACTTTGAATCTATGGATCGACATGGGAAATTGGCTGCAGACGATGAGTGGTGGGAAATACAAGAACGGGGAAATGAGGGTGGTTTCACAGATGAATCAGGACAAGTTGGTCCTTCTAGTTCATGCCGTTGTCAGGTTATCAGAAGTGTCAGTCAGTGGTCAGCAGGAACAAGCCAAGTTGAAGATAGCATTCACAGTGCTTATTGTTCTCTTATCGATAAAGCTGAGCACTTTATTTACATTGAGAATCAATTTTTCATCTCAGGTCTTTCAGGAGATGAAATAATACGGAATCGTGTGTTAGAAGCATTATTCCGTCGTATTATGCGAGCATACAATGATAAGAAGTGTTTTAGAATTATAATTGTCATACCACTCGTACCTGGTTTTCAAGGTGGTTTGGATGATGCTGGCGCGGCATCTGTGAGAGCTGTTATGCATTGGCAATATCGAACCATTTGCAGAGGGCATAATTCAATTCTACACAATTTATATGAACTTCTTGGTCCAAAGACACACGACTACATTTCTTTCTATGGCCTTAGAGCCTATGGTAAACTCTTTGATGGCGGTCCTGTGGCCTCCAGTCAGGTGTATGTGCATAGTAAAATCATGATTGTCGATGATTGTACAACTATAATTGGATCAGCTAACATCAATGATAGGAGTTTGCTTGGTTCAAGAGATTCTGAGATTGGTCTTCTTATTGAAGACAAAGAGTTGGTTAATTCATATATGGGAGGAAAACCATGGAAGGCTGGAAAATTTTCATTGAGTCTTCGCATGTCGCTATGGTCTGAACATCTTGGTATTCGCACTGGAGAGATGGACCAAATAATCGATCCAACTGTTGATTCAACTTACAAGGATATATGGATGGAGACAGCTAAGGCAAATACGACCATCTACCAAGATGTCTTTTCCTGTGTACCAAATGATTTTATACATTCTAGAGCTGCATTTAGACAAAACATAGCCTTTTGGAAGGAGAAGGTAGGGCACACAACCATTGATTTAGGAATTGCTTCTGGTACGCTAGAGTCGTATCAAAATGGAGATGTCAAGAAAGCAGATCCCATGGAGAGGTTAGAATCTATAAAGGGGCATCTTGTTTCTTTCCCTTTGGATTTCATGTTGAAAGAAGATTTGAGACCCGTGTTCAATGAGAGTGAGTATTATGCGTCACCTCAAGTATTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0006629 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0016298 GO:0016787 GO:0016788 GO:0022622 GO:0032501 GO:0032502 GO:0042578 GO:0044238 GO:0048364 GO:0048731 GO:0048856 GO:0071704 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

PLDc PLDc_2

Protein Analysis

1101

Amino Acids

125.1

Weight (kDa)

5.97

Isoelectric Point (pI)

45.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLDc	PF00614	479 - 506	9.5e-08	Phospholipase D Active site motif
PLDc_2	PF13091	883 - 946	4.9e-09	PLD-like domain
PLDc	PF00614	901 - 924	2.3e-06	Phospholipase D Active site motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16785 AT3G16785 AT3G16785 AT3G16785 AT3G16785 AT3G16785
fragaria_vesca	FvH4_4g18810 FvH4_6g06940 FvH4_6g06940 FvH4_6g06940
malus_domestica	MD04G1197500.v1.1 MD12G1210300.v1.1 MD13G1162600.v1.1 MD16G1162400.v1.1
prunus_persica	Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.6G317900_v2.0.a1 Prupe.6G317900_v2.0.a1 Prupe.6G317900_v2.0.a1
pyrus_communis	pycom04g17480 pycom13g13890 pycom16g13770
rosa_chinensis	RchiOBHm_Chr3g0456481 RchiOBHm_Chr4g0423621
rosa_laevigata	RLG00000007541 RLG00000025302
rosa_multiflora	Rmu_co8413375.1_g000001 Rmu_sc0000464.1_g000017 Rmu_sc0002607.1_g000011 Rmu_sc0008373.1_g000012 Rmu_sc0016309.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365830 Rroxscaffold_6G00422720
rosa_rugosa	Rorug03G0013400 Rorug03G0013400 Rorug03G0013400 Rorug04G0189100
rosa_samantha	Rh3AG073700 Rh3BG075600 Rh3DG076900 Rh4AG248700 Rh4BG254000 Rh4DG249000
rosa_wichuraiana	Rw3G006320 Rw4G021300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2465
AasI	GACNNNNNNGTC	1 cut(s)	2211
AatII	GACGTC	1 cut(s)	384
AccB1I	GGYRCC	1 cut(s)	243
AccB7I	CCANNNNNTGG	1 cut(s)	644
AccBSI	CCGCTC	2 cut(s)	36, 476
AccII	CGCG	2 cut(s)	124, 2519
AclWI	GGATC	6 cut(s)	701, 806, 2127, 2755, 2939, 3170
AcoI	YGGCCR	1 cut(s)	883
AcsI	RAATTY	2 cut(s)	315, 2867
AcuI	CTGAAG	2 cut(s)	1062, 1119
AcyI	GRCGYC	4 cut(s)	177, 244, 381, 1231
AfaI	GTAC	6 cut(s)	855, 1223, 2484, 2734, 3033, 3136
AfiI	CCNNNNNNNGG	9 cut(s)	179, 500, 504, 644, 1043, 1088, 2090, 2236, 3186
AjnI	CCWGG	5 cut(s)	713, 787, 1567, 1589, 2485
AjuI	GAANNNNNNNTTGG	2 cut(s)	2941, 2973
Alw21I	GWGCWC	2 cut(s)	390, 2334
Alw26I	GTCTC	6 cut(s)	163, 169, 407, 622, 2978, 3247
Alw44I	GTGCAC	1 cut(s)	386
AlwI	GGATC	6 cut(s)	701, 806, 2127, 2755, 2939, 3170
AoxI	GGCC	8 cut(s)	495, 646, 798, 883, 1034, 1565, 2641, 2682
ApaLI	GTGCAC	1 cut(s)	386
ApeKI	GCWGC	4 cut(s)	508, 1172, 2138, 3059
ApoI	RAATTY	2 cut(s)	315, 2867
Asp700I	GAANNNNTTC	4 cut(s)	348, 1296, 2869, 3127
AspLEI	GCGC	4 cut(s)	149, 246, 1081, 2519
AsuC2I	CCSGG	1 cut(s)	43
AsuHPI	GGTGA	3 cut(s)	1052, 1556, 3279
AvaII	GGWCC	8 cut(s)	1443, 1639, 1694, 2072, 2213, 2609, 2675, 2932
BaeGI	GKGCMC	2 cut(s)	390, 3105
BanI	GGYRCC	1 cut(s)	243
BauI	CACGAG	1 cut(s)	727
BbsI	GAAGAC	4 cut(s)	2057, 2795, 2820, 2873
Bbv12I	GWGCWC	2 cut(s)	390, 2334
BbvI	GCAGC	4 cut(s)	520, 1159, 2125, 3046
BceAI	ACGGC	4 cut(s)	64, 870, 1689, 2214
BcgI	CGANNNNNNTGC	2 cut(s)	2544, 2578
BciT130I	CCWGG	5 cut(s)	715, 789, 1569, 1591, 2487
BciVI	GTATCC	1 cut(s)	1612
BclI	TGATCA	1 cut(s)	1471
BcnI	CCSGG	1 cut(s)	43
BcoDI	GTCTC	6 cut(s)	163, 169, 407, 622, 2978, 3247
BfaI	CTAG	9 cut(s)	359, 468, 896, 1425, 1716, 1971, 2220, 3054, 3140
BfmI	CTRYAG	1 cut(s)	2139
BfoI	RGCGCY	2 cut(s)	150, 247
BfuI	GTATCC	1 cut(s)	1612
BglI	GCCNNNNNGGC	1 cut(s)	806
BlpI	GCTNAGC	1 cut(s)	2328
Bme1390I	CCNGG	6 cut(s)	43, 715, 789, 1569, 1591, 2487
Bme18I	GGWCC	8 cut(s)	1443, 1639, 1694, 2072, 2213, 2609, 2675, 2932
BmiI	GGNNCC	5 cut(s)	40, 245, 1072, 1445, 1695
BmrFI	CCNGG	6 cut(s)	43, 715, 789, 1569, 1591, 2487
BmsI	GCATC	6 cut(s)	269, 436, 1012, 2500, 2531, 3217
BpiI	GAAGAC	4 cut(s)	2057, 2795, 2820, 2873
BpmI	CTGGAG	2 cut(s)	2671, 2943
Bpu10I	CCTNAGC	3 cut(s)	651, 1287, 2991
Bpu1102I	GCTNAGC	1 cut(s)	2328
BpuEI	CTTGAG	3 cut(s)	576, 1926, 3276
BpuMI	CCSGG	1 cut(s)	43
Bsa29I	ATCGAT	2 cut(s)	2319, 2943
BsaBI	GATNNNNATC	1 cut(s)	918
BsaHI	GRCGYC	4 cut(s)	177, 244, 381, 1231
BsaI	GGTCTC	2 cut(s)	622, 3247
BsaJI	CCNNGG	8 cut(s)	122, 499, 864, 1589, 1590, 1664, 2852, 3180
BsaXI	ACNNNNNCTCC	2 cut(s)	973, 1003
Bsc4I	CCNNNNNNNGG	9 cut(s)	179, 500, 504, 644, 1043, 1088, 2090, 2236, 3186
Bse118I	RCCGGY	2 cut(s)	179, 493
Bse1I	ACTGG	4 cut(s)	764, 2066, 2688, 2926
Bse3DI	GCAATG	2 cut(s)	546, 1996
Bse8I	GATNNNNATC	1 cut(s)	918
BseBI	CCWGG	5 cut(s)	715, 789, 1569, 1591, 2487
BseCI	ATCGAT	2 cut(s)	2319, 2943
BseDI	CCNNGG	8 cut(s)	122, 499, 864, 1589, 1590, 1664, 2852, 3180
BseGI	GGATG	6 cut(s)	874, 886, 1054, 1910, 2512, 2985
BseJI	GATNNNNATC	1 cut(s)	918
BseLI	CCNNNNNNNGG	9 cut(s)	179, 500, 504, 644, 1043, 1088, 2090, 2236, 3186
BseMI	GCAATG	2 cut(s)	546, 1996
BseMII	CTCAG	5 cut(s)	1045, 1848, 2319, 2379, 2784
BseNI	ACTGG	4 cut(s)	764, 2066, 2688, 2926
BseSI	GKGCMC	2 cut(s)	390, 3105
BseXI	GCAGC	4 cut(s)	520, 1159, 2125, 3046
BseYI	CCCAGC	1 cut(s)	143
Bsh1236I	CGCG	2 cut(s)	124, 2519
Bsh1285I	CGRYCG	1 cut(s)	62
BshFI	GGCC	8 cut(s)	497, 648, 800, 885, 1036, 1567, 2643, 2684
BshNI	GGYRCC	1 cut(s)	243
BshVI	ATCGAT	2 cut(s)	2319, 2943
BsiEI	CGRYCG	1 cut(s)	62
BsiHKAI	GWGCWC	2 cut(s)	390, 2334
BsiSI	CCGG	5 cut(s)	43, 100, 180, 494, 958
BslFI	GGGAC	4 cut(s)	404, 1041, 1429, 1707
BslI	CCNNNNNNNGG	9 cut(s)	179, 500, 504, 644, 1043, 1088, 2090, 2236, 3186
BsmAI	GTCTC	6 cut(s)	163, 169, 407, 622, 2978, 3247
BsmBI	CGTCTC	2 cut(s)	163, 169
BsmFI	GGGAC	4 cut(s)	404, 1041, 1429, 1707
BsmI	GAATGC	2 cut(s)	1864, 2292
BsnI	GGCC	8 cut(s)	497, 648, 800, 885, 1036, 1567, 2643, 2684
Bso31I	GGTCTC	2 cut(s)	622, 3247
Bsp1286I	GDGCHC	3 cut(s)	390, 2334, 3105
Bsp1407I	TGTACA	2 cut(s)	1221, 2732
Bsp1720I	GCTNAGC	1 cut(s)	2328
Bsp19I	CCATGG	2 cut(s)	2852, 3180
BspANI	GGCC	8 cut(s)	497, 648, 800, 885, 1036, 1567, 2643, 2684
BspCNI	CTCAG	5 cut(s)	1044, 1847, 2320, 2378, 2785
BspDI	ATCGAT	2 cut(s)	2319, 2943
BspFNI	CGCG	2 cut(s)	124, 2519
BspHI	TCATGA	2 cut(s)	1384, 2715
BspLI	GGNNCC	5 cut(s)	40, 245, 1072, 1445, 1695
BspMAI	CTGCAG	1 cut(s)	2143
BspPI	GGATC	6 cut(s)	701, 806, 2127, 2755, 2939, 3170
BspT107I	GGYRCC	1 cut(s)	243
BspTNI	GGTCTC	2 cut(s)	622, 3247
BsrBI	CCGCTC	2 cut(s)	36, 476
BsrDI	GCAATG	2 cut(s)	546, 1996
BsrFI	RCCGGY	2 cut(s)	179, 493
BsrGI	TGTACA	2 cut(s)	1221, 2732
BsrI	ACTGG	4 cut(s)	764, 2066, 2688, 2926
BssAI	RCCGGY	2 cut(s)	179, 493
BssECI	CCNNGG	8 cut(s)	122, 499, 864, 1589, 1590, 1664, 2852, 3180
BssNI	GRCGYC	4 cut(s)	177, 244, 381, 1231
BssSI	CACGAG	1 cut(s)	727
BssT1I	CCWWGG	4 cut(s)	499, 1664, 2852, 3180
Bst2BI	CACGAG	1 cut(s)	727
Bst2UI	CCWGG	5 cut(s)	715, 789, 1569, 1591, 2487
Bst4CI	ACNGT	5 cut(s)	418, 1643, 1682, 2300, 2953
BstACI	GRCGYC	4 cut(s)	177, 244, 381, 1231
BstAUI	TGTACA	2 cut(s)	1221, 2732
BstC8I	GCNNGC	7 cut(s)	181, 495, 1661, 1773, 1864, 2433, 2515
BstDEI	CTNAG	9 cut(s)	651, 1031, 1287, 1834, 2328, 2365, 2645, 2793, 2991
BstDSI	CCRYGG	3 cut(s)	122, 2852, 3180
BstENI	CCTNNNNNAGG	2 cut(s)	1041, 1086
BstF5I	GGATG	6 cut(s)	874, 886, 1054, 1910, 2512, 2985
BstFNI	CGCG	2 cut(s)	124, 2519
BstH2I	RGCGCY	2 cut(s)	150, 247
BstHHI	GCGC	4 cut(s)	149, 246, 1081, 2519
BstMAI	GTCTC	6 cut(s)	163, 169, 407, 622, 2978, 3247
BstMCI	CGRYCG	1 cut(s)	62
BstMWI	GCNNNNNNNGC	9 cut(s)	64, 85, 189, 806, 1148, 1169, 1359, 1798, 2519
BstNI	CCWGG	5 cut(s)	715, 789, 1569, 1591, 2487
BstNSI	RCATGY	3 cut(s)	1228, 1663, 2890
BstSCI	CCNGG	6 cut(s)	41, 713, 787, 1567, 1589, 2485
BstSFI	CTRYAG	1 cut(s)	2139
BstSLI	GKGCMC	2 cut(s)	390, 3105
BstUI	CGCG	2 cut(s)	124, 2519
BstV1I	GCAGC	4 cut(s)	520, 1159, 2125, 3046
BstV2I	GAAGAC	4 cut(s)	2057, 2795, 2820, 2873
BstX2I	RGATCY	2 cut(s)	811, 3175
BstXI	CCANNNNNNTGG	1 cut(s)	1611
BstYI	RGATCY	2 cut(s)	811, 3175
Bsu15I	ATCGAT	2 cut(s)	2319, 2943
BsuI	GTATCC	1 cut(s)	1612
BsuRI	GGCC	8 cut(s)	497, 648, 800, 885, 1036, 1567, 2643, 2684
BsuTUI	ATCGAT	2 cut(s)	2319, 2943
BtgI	CCRYGG	3 cut(s)	122, 2852, 3180
BtsCI	GGATG	6 cut(s)	874, 886, 1054, 1910, 2512, 2985
BtsIMutI	CAGTG	4 cut(s)	1678, 2264, 2305, 2919
Cac8I	GCNNGC	7 cut(s)	181, 495, 1661, 1773, 1864, 2433, 2515
CciI	TCATGA	2 cut(s)	1384, 2715
CfoI	GCGC	4 cut(s)	149, 246, 1081, 2519
Cfr10I	RCCGGY	2 cut(s)	179, 493
Cfr42I	CCGCGG	1 cut(s)	125
ClaI	ATCGAT	2 cut(s)	2319, 2943
CseI	GACGC	4 cut(s)	185, 999, 1220, 3273
CsiI	ACCWGGT	1 cut(s)	2485
Csp6I	GTAC	6 cut(s)	854, 1222, 2483, 2733, 3032, 3135
CviQI	GTAC	6 cut(s)	854, 1222, 2483, 2733, 3032, 3135
DdeI	CTNAG	9 cut(s)	651, 1031, 1287, 1834, 2328, 2365, 2645, 2793, 2991
DinI	GGCGCC	1 cut(s)	245
DrdI	GACNNNNNNGTC	1 cut(s)	2211
DseDI	GACNNNNNNGTC	1 cut(s)	2211
EaeI	YGGCCR	1 cut(s)	883
Eco130I	CCWWGG	4 cut(s)	499, 1664, 2852, 3180
Eco147I	AGGCCT	1 cut(s)	1036
Eco31I	GGTCTC	2 cut(s)	622, 3247
Eco32I	GATATC	4 cut(s)	21, 187, 551, 1924
Eco47I	GGWCC	8 cut(s)	1443, 1639, 1694, 2072, 2213, 2609, 2675, 2932
Eco57I	CTGAAG	2 cut(s)	1062, 1119
EcoNI	CCTNNNNNAGG	2 cut(s)	1041, 1086
EcoO109I	RGGNCCY	1 cut(s)	1694
EcoRII	CCWGG	5 cut(s)	713, 787, 1567, 1589, 2485
EcoRV	GATATC	4 cut(s)	21, 187, 551, 1924
EcoT14I	CCWWGG	4 cut(s)	499, 1664, 2852, 3180
EcoT22I	ATGCAT	1 cut(s)	2544
EgeI	GGCGCC	1 cut(s)	245
EheI	GGCGCC	1 cut(s)	245
ErhI	CCWWGG	4 cut(s)	499, 1664, 2852, 3180
Esp3I	CGTCTC	2 cut(s)	163, 169
FalI	AAGNNNNNCTT	4 cut(s)	333, 365, 537, 569
FaqI	GGGAC	4 cut(s)	404, 1041, 1429, 1707
FauI	CCCGC	2 cut(s)	176, 1018
FauNDI	CATATG	1 cut(s)	1978
FbaI	TGATCA	1 cut(s)	1471
FokI	GGATG	6 cut(s)	881, 893, 1041, 1897, 2519, 2992
FspBI	CTAG	9 cut(s)	359, 468, 896, 1425, 1716, 1971, 2220, 3054, 3140
GlaI	GCGC	4 cut(s)	148, 245, 1080, 2518
GsaI	CCCAGC	1 cut(s)	147
GsuI	CTGGAG	2 cut(s)	2671, 2943
HaeII	RGCGCY	2 cut(s)	150, 247
HaeIII	GGCC	8 cut(s)	497, 648, 800, 885, 1036, 1567, 2643, 2684
HapII	CCGG	5 cut(s)	43, 100, 180, 494, 958
HgaI	GACGC	4 cut(s)	185, 999, 1220, 3273
HhaI	GCGC	4 cut(s)	149, 246, 1081, 2519
Hin1I	GRCGYC	4 cut(s)	177, 244, 381, 1231
Hin6I	GCGC	4 cut(s)	147, 244, 1079, 2517
HinP1I	GCGC	4 cut(s)	147, 244, 1079, 2517
HincII	GTYRAC	1 cut(s)	72
HindII	GTYRAC	1 cut(s)	72
HpaI	GTTAAC	1 cut(s)	72
HpaII	CCGG	5 cut(s)	43, 100, 180, 494, 958
HphI	GGTGA	3 cut(s)	1052, 1556, 3279
Hpy166II	GTNNAC	8 cut(s)	72, 388, 586, 1435, 1678, 1987, 2660, 3032
Hpy8I	GTNNAC	8 cut(s)	72, 388, 586, 1435, 1678, 1987, 2660, 3032
Hpy99I	CGWCG	9 cut(s)	31, 79, 85, 88, 137, 179, 386, 1906, 2424
HpyAV	CCTTC	8 cut(s)	121, 720, 1037, 1286, 2226, 2851, 3082, 3088
HpyCH4III	ACNGT	5 cut(s)	418, 1643, 1682, 2300, 2953
HpyCH4IV	ACGT	3 cut(s)	74, 381, 1405
HpyF10VI	GCNNNNNNNGC	9 cut(s)	64, 85, 189, 806, 1148, 1169, 1359, 1798, 2519
HpyF3I	CTNAG	9 cut(s)	651, 1031, 1287, 1834, 2328, 2365, 2645, 2793, 2991
HpySE526I	ACGT	3 cut(s)	74, 381, 1405
Hsp92I	GRCGYC	4 cut(s)	177, 244, 381, 1231
HspAI	GCGC	4 cut(s)	147, 244, 1079, 2517
KasI	GGCGCC	1 cut(s)	243
KroI	GCCGGC	2 cut(s)	179, 493
KroNI	GCCGGC	2 cut(s)	181, 495
Ksp22I	TGATCA	1 cut(s)	1471
KspAI	GTTAAC	1 cut(s)	72
KspI	CCGCGG	1 cut(s)	125
LmnI	GCTCC	6 cut(s)	10, 33, 64, 960, 1076, 1765
Lsp1109I	GCAGC	4 cut(s)	520, 1159, 2125, 3046
LweI	GCATC	6 cut(s)	269, 436, 1012, 2500, 2531, 3217
MabI	ACCWGGT	1 cut(s)	2485
MaeI	CTAG	9 cut(s)	359, 468, 896, 1425, 1716, 1971, 2220, 3054, 3140
MaeII	ACGT	3 cut(s)	74, 381, 1405
MaeIII	GTNAC	3 cut(s)	1544, 2024, 3285
MbiI	CCGCTC	2 cut(s)	36, 476
MfeI	CAATTG	1 cut(s)	1164
MflI	RGATCY	2 cut(s)	811, 3175
MhlI	GDGCHC	3 cut(s)	390, 2334, 3105
Mly113I	GGCGCC	1 cut(s)	244
MlyI	GAGTC	4 cut(s)	1023, 1982, 2887, 3152
MmeI	TCCRAC	3 cut(s)	1471, 1617, 2972
Mph1103I	ATGCAT	1 cut(s)	2544
MreI	CGCCGGCG	1 cut(s)	179
MroNI	GCCGGC	2 cut(s)	179, 493
MroXI	GAANNNNTTC	4 cut(s)	348, 1296, 2869, 3127
MslI	CAYNNNNRTG	4 cut(s)	393, 432, 435, 1389
MspA1I	CMGCKG	2 cut(s)	124, 1732
MspI	CCGG	5 cut(s)	43, 100, 180, 494, 958
MspR9I	CCNGG	6 cut(s)	43, 715, 789, 1569, 1591, 2487
MunI	CAATTG	1 cut(s)	1164
Mva1269I	GAATGC	2 cut(s)	1864, 2292
MvaI	CCWGG	5 cut(s)	715, 789, 1569, 1591, 2487
MvnI	CGCG	2 cut(s)	124, 2519
MwoI	GCNNNNNNNGC	9 cut(s)	64, 85, 189, 806, 1148, 1169, 1359, 1798, 2519
NaeI	GCCGGC	2 cut(s)	181, 495
NarI	GGCGCC	1 cut(s)	244
NciI	CCSGG	1 cut(s)	43
NcoI	CCATGG	2 cut(s)	2852, 3180
NdeI	CATATG	1 cut(s)	1978
NgoMIV	GCCGGC	2 cut(s)	179, 493
NlaIV	GGNNCC	5 cut(s)	40, 245, 1072, 1445, 1695
NmuCI	GTSAC	2 cut(s)	1544, 3285
NsiI	ATGCAT	1 cut(s)	2544
NspI	RCATGY	3 cut(s)	1228, 1663, 2890
PaeI	GCATGC	1 cut(s)	1663
PagI	TCATGA	2 cut(s)	1384, 2715
PasI	CCCWGGG	1 cut(s)	1590
PceI	AGGCCT	1 cut(s)	1036
PcsI	WCGNNNNNNNCGW	5 cut(s)	80, 92, 387, 2428, 3143
PctI	GAATGC	2 cut(s)	1864, 2292
PdiI	GCCGGC	2 cut(s)	181, 495
PdmI	GAANNNNTTC	4 cut(s)	348, 1296, 2869, 3127
PflMI	CCANNNNNTGG	1 cut(s)	644
PfoI	TCCNGGA	1 cut(s)	713
Ple19I	CGATCG	1 cut(s)	62
PleI	GAGTC	4 cut(s)	1023, 1982, 2886, 3151
PluTI	GGCGCC	1 cut(s)	247
PpsI	GAGTC	4 cut(s)	1023, 1982, 2886, 3151
PpuMI	RGGWCCY	1 cut(s)	1694
PsiI	TTATAA	1 cut(s)	2465
Psp5II	RGGWCCY	1 cut(s)	1694
Psp6I	CCWGG	5 cut(s)	713, 787, 1567, 1589, 2485
PspFI	CCCAGC	1 cut(s)	143
PspGI	CCWGG	5 cut(s)	713, 787, 1567, 1589, 2485
PspN4I	GGNNCC	5 cut(s)	40, 245, 1072, 1445, 1695
PspPPI	RGGWCCY	1 cut(s)	1694
PstI	CTGCAG	1 cut(s)	2143
PsuI	RGATCY	2 cut(s)	811, 3175
PvuI	CGATCG	1 cut(s)	62
RsaI	GTAC	6 cut(s)	855, 1223, 2484, 2734, 3033, 3136
RsaNI	GTAC	6 cut(s)	854, 1222, 2483, 2733, 3032, 3135
RseI	CAYNNNNRTG	4 cut(s)	393, 432, 435, 1389
SacII	CCGCGG	1 cut(s)	125
SchI	GAGTC	4 cut(s)	1023, 1982, 2887, 3152
ScrFI	CCNGG	6 cut(s)	43, 715, 789, 1569, 1591, 2487
SduI	GDGCHC	3 cut(s)	390, 2334, 3105
SexAI	ACCWGGT	1 cut(s)	2485
SfaNI	GCATC	6 cut(s)	269, 436, 1012, 2500, 2531, 3217
SfcI	CTRYAG	1 cut(s)	2139
SfoI	GGCGCC	1 cut(s)	245
Sfr303I	CCGCGG	1 cut(s)	125
SgrAI	CRCCGGYG	1 cut(s)	179
SgrBI	CCGCGG	1 cut(s)	125
SinI	GGWCC	8 cut(s)	1443, 1639, 1694, 2072, 2213, 2609, 2675, 2932
SmiMI	CAYNNNNRTG	4 cut(s)	393, 432, 435, 1389
SmlI	CTYRAG	3 cut(s)	591, 1941, 3291
SmoI	CTYRAG	3 cut(s)	591, 1941, 3291
SphI	GCATGC	1 cut(s)	1663
SseBI	AGGCCT	1 cut(s)	1036
SspDI	GGCGCC	1 cut(s)	243
SspMI	CTAG	9 cut(s)	359, 468, 896, 1425, 1716, 1971, 2220, 3054, 3140
StuI	AGGCCT	1 cut(s)	1036
StyD4I	CCNGG	6 cut(s)	41, 713, 787, 1567, 1589, 2485
StyI	CCWWGG	4 cut(s)	499, 1664, 2852, 3180
TaaI	ACNGT	5 cut(s)	418, 1643, 1682, 2300, 2953
TaiI	ACGT	3 cut(s)	77, 384, 1408
TatI	WGTACW	3 cut(s)	853, 1221, 2732
TauI	GCSGC	7 cut(s)	121, 124, 476, 1142, 1231, 1795, 2522
TscAI	CASTG	4 cut(s)	1685, 2264, 2305, 2926
TseFI	GTSAC	2 cut(s)	1544, 3285
TseI	GCWGC	4 cut(s)	508, 1172, 2138, 3059
Tsp45I	GTSAC	2 cut(s)	1544, 3285
TspGWI	ACGGA	5 cut(s)	151, 392, 1224, 2407, 2408
TspRI	CASTG	4 cut(s)	1685, 2264, 2305, 2926
Van91I	CCANNNNNTGG	1 cut(s)	644
VneI	GTGCAC	1 cut(s)	386
VpaK11BI	GGWCC	8 cut(s)	1443, 1639, 1694, 2072, 2213, 2609, 2675, 2932
XagI	CCTNNNNNAGG	2 cut(s)	1041, 1086
XapI	RAATTY	2 cut(s)	315, 2867
XbaI	TCTAGA	1 cut(s)	3053
XceI	RCATGY	3 cut(s)	1228, 1663, 2890
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1424
XmnI	GAANNNNTTC	4 cut(s)	348, 1296, 2869, 3127
XspI	CTAG	9 cut(s)	359, 468, 896, 1425, 1716, 1971, 2220, 3054, 3140
ZraI	GACGTC	1 cut(s)	382
Zsp2I	ATGCAT	1 cut(s)	2544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.