RchiOBHm_Chr3g0456481

phospholipase D

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
5989061 .. 5995993
6933 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42331

Sequence Viewer

Length: 3366 bp
ATGTCGTCGGAGAAGCTCATTGGCAAGGGTGCCGTACGCTCCGACTCGTTCCGGCAATGCGGGGAGATGGTGCCCATTTTTGAAGAGTTGCCGGTGGCCACTATCGTATCGGTGTCGCGCCCCGATACCGGAGATATCAGCCCCATGCTCTTGTCTTACACAATTGAGTTTCAGTACAAACAGGCATGCTTCTCTCTTTGGATTAAATTTTTAAGCTTTTGTGCAAAAATTGCTGTTAGAGATCCTGGGATTTTTTTCAAGTGGCGGTTACTGAAGAAAGCATCACAAGTTCTCTATCTACATTTTGCATTGAAGAAACGCGCAATAATTGAGGAGTTCCATGAGAAACAAGAGCAGGTTAAAGAATGGCTCCACAGCATAGGAATAGCAGATCAGACAGCAGTAGTGGAAGATGATGATGAACCAGATGATGGGGCTGTTCCTTTACATAATGAAGATAGTGTTAGAAACAGATATGTTCCATCTCGTGCCGCTTTGCCCATCATCCGTCCAGCACTAGGAGGGCAGCAGTCCATCTCAGACCTAGCAAAGGTGGCAATGCAGGGTTATTTGAACCATTTTTTGGGAAACATGGATCTAGTGAATTGTCGAGAGGTCTGCAAATTTTTGGAGGTTTCACAGTTGTCCTTCTTACAAGAGTATGGACCAAAATTGAAAGAAGGTTATGTCATGGTGAAGCATCTGCCAAAATTTTCAGGGGCCAATTCTGATGTGGCATCTTGTGCTGGCTTTTGTCTGGGTTATTGTAGCAACAATTGGCAAAAGGTCTGGGCTGTTTTAAAACCTGGGTTCTTGGCCTTTCTGGATGATCCTTTTGACACTGAACTTCTAGACATTATCGTTTTCAATGCTCTTCCACCCTCAAATGGAAAAGGATCTGAAAATTATTTGGCAAGTCAAATAAAGGAACGAAACCCTTTACGTTATACATTTAGGGTTGCTTCTGGAAATCAAAGCTTAAGGATAAGAACCACTAGCAATGCTAAAGTTAAAGATTGGGTTACTGCAATTAATGATGCTGGCCTAAGGCCTCATGAAGGTTGGTGCCATCCTCATCGCTTCGGTTCCTTTGCTCCTCCCAGGGGTTTGACTGATGATGGGAGTCAAGCTCAGTGGTTTATAGATGGTGAAGCAGCATTTGAAGCTATTGCTTCCTCTATTGAGGGTGCAAAATCAGAGATATTCATTACTGGCTGGTGGCTTTGCCCAGAACTGTATCTAAGACGTCCTTTCAGTATCAACTCTTCTTCTAGGCTTGATGCTTTACTAGAAGCAAAAGCCAAGCAAGGGGTTCAGATTTACATTCTTCTCTACAAGGAGGTTTCTCTTGCTTTAAAGATCAACAGCTTATATAGTAAGAAAAGACTTTCAAATATTCATGAGAATGTGAGAGTAATGCGCTACCCCGACCGTTTTCCCACAGGAATTTACTTATGGTCACACCATGAAAAACTTGTCATTGTTGATTATCAGATTTGCTACATTGGAGGATTAGATTTGTGCTTTGGCCGTTATGACACGGTTGAACACAAAGTGGGTGACTGCCCTCCTTCTGTATGGCCAGGGAAGGACTATTATAACCCAAGAGAATCTGAACCAAATTCTTGGGAAGATGTAATGAAAGACGAATTGGAGCGTGAAAAAGTTCCGCGTATGCCATGGCATGATGTCCACTGTGCTCTCTGGGGACCTCCTTGTCGTGACATTGCCAGGCACTTTGTTCAGCGGTGGAACCATGCTAAGAGAAACAAAGCTCCAAATGAACAAGCACTTCCACTACTTATGCCTCAACATCACATGGTCATCCCTCATTACATGGGAAGAAGTAGAGAGATAGACATTGAGAAAAGGAAAGTGGAAGAGACCCAGAATGGGATCCAGAGAGTGAACTCCTTTTCCTCTCTAACACCTTTGCAAAATATCCCGTTGCTTTTGCCTCAAGAAGCTGACGGTTTGGAACCTCCTGGTGTAGATCAAAAGTTAAGTGCCCAGCAGATGCATCATTATCCTGTTGACCAGCCAAATGGGATATCTGGTAGTGTTTCATTATCTTCCAGGAAGCCCAAAGTCAAAGCTTTAGACCCAGATACGCAGATGAATGGTTTGATGGATGATCTTTATTCTATGGATCTTGAAAGTGGAACCAATATACACTCAATGGCCCAATCTGGCTTGACAGCTTCAAATGAATGGTCAGAAAGTTCAGAGGAAAGTGATCATGCTGTTGCTGCTGATGACTGTGGACAAACAGGTCCTCGTACTGCATGCAAATTTCAGGTAATTCGAAGTGTGAGCCAGTGGTCTGCTGGAACTAGCCAAACTGAAGAAAGCATACATAATGCTTATTGCTCTCTCATCGAGAAAGCAGAACACTTCGTGTATATTGAGAATCAATTTTTCATATCAGGTCTTTCAGGGGATGAGATTATACAGAACCGTATCCTGGAAGTATTGTACAGGCGTATTGTTCTAGCACACAAAGAACAAAAGTGTTTTAGGGTTATTGTTGTCATGCCCCTCTTGCCTGGCTTTCAGGGTGGCGTGGATGATTATGGTGCAGCAACTGTTAGAGCCATTATGCATTGGCAGTATCGAACCATTTGCTGGGAGAAGTATTCAATACTCCATAAACTTAAAGTTTTGCCTGGTCCTAAGACACATGACTACATTTCTTTCTATGGTCTGAGAACATATGGTAAACTGTTTGAAGATGGCCCTCTATCCACAAGTCAGGTGTATGTACACAGTAAAGTGATGATTGTAGATGACCGTGTTGCTTTGATTGGATCATCAAATATTAATGACAGAAGTTTACTCGGATCAAGAGACTCTGAGATTGGTGTAGTTATAGAAGATAAAGAGTTTCTTGAATCGTCCATGGCCGGACAGCCTTGGAAGGCCGGAAAGTTTTCTTATAGTCTTAGGTGCTCCCTGTGGTCTGAACACCTGGGTCTTCATGCAGGAGAGATAAATCAAATCAGCGATCCTGTGTCAGACTCAACATACAAAGATCTGTGGCTAGCGACTGCAAAGGAAAATTTAATTATCTACCAAGATGTATTTTCTTGTATTCCGAATGATTCTATAAACTCAAGAGCTGCTCTCAGAGAATCCATCGCTTTTTGGAAAGAGAAGCTCGGTCACACTACAATCGATCTGGGAATAGCTCCTAAGAAGCTAGAATCCTGGGAGAATGGAGAGATTAAAGAAACCGATCCAATGGAAAGACTGAAACATATAAGGGGACATCTTGTTTCCTTTCCTTTAGAGTTTATGAACCAAGAAGATTTGAGACCAGTGTTTAATGAAAGTGAATTTTATACATCTCCTCAAGTATTTATGTAA

Protein Analysis

1121

Amino Acids

127.09

Weight (kDa)

6.05

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLDc PF00614 484 - 511 6.3e-07 Phospholipase D Active site motif
PLDc_2 PF13091 903 - 964 1.2e-08 PLD-like domain
PLDc PF00614 921 - 944 1.5e-07 Phospholipase D Active site motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1599
AasI GACNNNNNNGTC 2 cut(s) 1716, 2271
AatII GACGTC 1 cut(s) 1249
Acc36I ACCTGC 1 cut(s) 346
AccB1I GGYRCC 3 cut(s) 29, 70, 1065
AccB7I CCANNNNNTGG 3 cut(s) 431, 583, 2625
AccII CGCG 3 cut(s) 118, 321, 1672
AciI CCGC 5 cut(s) 60, 265, 492, 1670, 1747
AcoI YGGCCR 4 cut(s) 96, 1528, 1580, 2901
AcsI RAATTY 8 cut(s) 206, 623, 710, 1446, 1621, 2291, 3058, 3335
AcuI CTGAAG 2 cut(s) 293, 2364
AcyI GRCGYC 1 cut(s) 1246
AdeI CACNNNGTG 2 cut(s) 1555, 2398
AfaI GTAC 5 cut(s) 36, 176, 2281, 2477, 2763
AflII CTTAAG 1 cut(s) 979
AjuI GAANNNNNNNTTGG 4 cut(s) 566, 598, 1634, 1666
AloI GAACNNNNNNTCC 2 cut(s) 1901, 1933
Alw21I GWGCWC 2 cut(s) 1702, 2951
Alw26I GTCTC 3 cut(s) 1877, 2841, 3307
AlwNI CAGNNNCTG 1 cut(s) 2585
ApeKI GCWGC 5 cut(s) 526, 1154, 2249, 2579, 3119
ApoI RAATTY 8 cut(s) 206, 623, 710, 1446, 1621, 2291, 3058, 3335
ArsI GACNNNNNNTTYG 2 cut(s) 2198, 2230
AseI ATTAAT 2 cut(s) 1032, 2820
Asp700I GAANNNNTTC 2 cut(s) 1665, 2929
AspLEI GCGC 3 cut(s) 120, 323, 1422
AspS9I GGNCC 7 cut(s) 665, 720, 1709, 2182, 2273, 2669, 2735
AsuHPI GGTGA 3 cut(s) 706, 1160, 1571
AsuII TTCGAA 1 cut(s) 2305
AsuNHI GCTAGC 1 cut(s) 3040
AvaII GGWCC 4 cut(s) 665, 1709, 2273, 2669
AxyI CCTNAGG 1 cut(s) 1046
BaeGI GKGCMC 2 cut(s) 75, 2011
BaeI ACNNNNGTAYC 2 cut(s) 90, 123
BalI TGGCCA 2 cut(s) 98, 1582
BamHI GGATCC 1 cut(s) 1896
BanI GGYRCC 3 cut(s) 29, 70, 1065
BarI GAAGNNNNNNTAC 4 cut(s) 1249, 1281, 2337, 2369
BauI CACGAG 1 cut(s) 486
BbsI GAAGAC 1 cut(s) 2966
Bbv12I GWGCWC 2 cut(s) 1702, 2951
BbvI GCAGC 5 cut(s) 538, 1166, 2236, 2591, 3106
BceAI ACGGC 2 cut(s) 17, 1515
BcgI CGANNNNNNTGC 4 cut(s) 600, 634, 2604, 2638
BciVI GTATCC 1 cut(s) 2471
BclI TGATCA 1 cut(s) 2236
BcoDI GTCTC 3 cut(s) 1877, 2841, 3307
BfrI CTTAAG 1 cut(s) 979
BfuAI ACCTGC 1 cut(s) 346
BfuI GTATCC 1 cut(s) 2471
BglII AGATCT 1 cut(s) 3031
BisI GCNGC 6 cut(s) 492, 527, 1155, 2250, 2580, 3120
BlsI GCNGC 6 cut(s) 493, 528, 1156, 2251, 2581, 3121
Bme18I GGWCC 4 cut(s) 665, 1709, 2273, 2669
BmgT120I GGNCC 7 cut(s) 665, 720, 1709, 2182, 2273, 2669, 2735
BmsI GCATC 7 cut(s) 290, 709, 746, 1027, 1270, 2007, 2029
BmtI GCTAGC 1 cut(s) 3044
BpiI GAAGAC 1 cut(s) 2966
BplI GAGNNNNNCTC 4 cut(s) 1114, 1146, 3108, 3140
Bpu14I TTCGAA 1 cut(s) 2305
BpuEI CTTGAG 3 cut(s) 1944, 3097, 3336
Bsa29I ATCGAT 1 cut(s) 3174
BsaHI GRCGYC 1 cut(s) 1246
BsaI GGTCTC 2 cut(s) 1877, 3307
BsaWI WCCGGW 1 cut(s) 128
Bse118I RCCGGY 1 cut(s) 91
Bse1I ACTGG 3 cut(s) 1216, 2317, 3317
Bse21I CCTNAGG 1 cut(s) 1046
Bse3DI GCAATG 4 cut(s) 62, 564, 1006, 1725
BseCI ATCGAT 1 cut(s) 3174
BseGI GGATG 7 cut(s) 504, 832, 1069, 1824, 2137, 2446, 2572
BseMI GCAATG 4 cut(s) 62, 564, 1006, 1725
BseMII CTCAG 5 cut(s) 552, 1145, 2696, 2844, 3139
BseNI ACTGG 3 cut(s) 1216, 2317, 3317
BseRI GAGGAG 3 cut(s) 347, 1086, 3339
BseSI GKGCMC 2 cut(s) 75, 2011
BseXI GCAGC 5 cut(s) 538, 1166, 2236, 2591, 3106
BseYI CCCAGC 2 cut(s) 2010, 2625
BsgI GTGCAG 1 cut(s) 2598
Bsh1236I CGCG 3 cut(s) 118, 321, 1672
Bsh1285I CGRYCG 1 cut(s) 1432
BshNI GGYRCC 3 cut(s) 29, 70, 1065
BshVI ATCGAT 1 cut(s) 3174
BsiEI CGRYCG 1 cut(s) 1432
BsiHKAI GWGCWC 2 cut(s) 1702, 2951
BsiSI CCGG 5 cut(s) 52, 92, 129, 2904, 2922
BsiWI CGTACG 1 cut(s) 34
BslFI GGGAC 2 cut(s) 1722, 3279
BsmAI GTCTC 3 cut(s) 1877, 2841, 3307
BsmFI GGGAC 2 cut(s) 1722, 3279
Bso31I GGTCTC 2 cut(s) 1877, 3307
Bsp119I TTCGAA 1 cut(s) 2305
Bsp1286I GDGCHC 4 cut(s) 75, 1702, 2011, 2951
Bsp1407I TGTACA 2 cut(s) 2475, 2761
Bsp19I CCATGG 2 cut(s) 1679, 2898
BspACI CCGC 5 cut(s) 60, 265, 492, 1670, 1747
BspCNI CTCAG 5 cut(s) 551, 1144, 2697, 2845, 3138
BspDI ATCGAT 1 cut(s) 3174
BspFNI CGCG 3 cut(s) 118, 321, 1672
BspHI TCATGA 2 cut(s) 1054, 1399
BspMI ACCTGC 1 cut(s) 346
BspOI GCTAGC 1 cut(s) 3044
BspQI GCTCTTC 1 cut(s) 879
BspT104I TTCGAA 1 cut(s) 2305
BspT107I GGYRCC 3 cut(s) 29, 70, 1065
BspTI CTTAAG 1 cut(s) 979
BspTNI GGTCTC 2 cut(s) 1877, 3307
BsrDI GCAATG 4 cut(s) 62, 564, 1006, 1725
BsrFI RCCGGY 1 cut(s) 91
BsrGI TGTACA 2 cut(s) 2475, 2761
BsrI ACTGG 3 cut(s) 1216, 2317, 3317
BssAI RCCGGY 1 cut(s) 91
BssNI GRCGYC 1 cut(s) 1246
BssSI CACGAG 1 cut(s) 486
BssT1I CCWWGG 3 cut(s) 1679, 2898, 2912
Bst2BI CACGAG 1 cut(s) 486
Bst6I CTCTTC 4 cut(s) 78, 879, 1270, 1875
BstACI GRCGYC 1 cut(s) 1246
BstAFI CTTAAG 1 cut(s) 979
BstAPI GCANNNNNTGC 2 cut(s) 230, 743
BstAUI TGTACA 2 cut(s) 2475, 2761
BstBI TTCGAA 1 cut(s) 2305
BstC8I GCNNGC 5 cut(s) 187, 748, 1042, 2287, 3042
BstDSI CCRYGG 2 cut(s) 1679, 2898
BstENI CCTNNNNNAGG 2 cut(s) 548, 1056
BstF5I GGATG 7 cut(s) 504, 832, 1069, 1824, 2137, 2446, 2572
BstFNI CGCG 3 cut(s) 118, 321, 1672
BstHHI GCGC 3 cut(s) 120, 323, 1422
BstMAI GTCTC 3 cut(s) 1877, 2841, 3307
BstMCI CGRYCG 1 cut(s) 1432
BstMWI GCNNNNNNNGC 6 cut(s) 230, 554, 743, 1163, 2249, 2542
BstNSI RCATGY 2 cut(s) 189, 2289
BstSLI GKGCMC 2 cut(s) 75, 2011
BstUI CGCG 3 cut(s) 118, 321, 1672
BstV1I GCAGC 5 cut(s) 538, 1166, 2236, 2591, 3106
BstV2I GAAGAC 1 cut(s) 2966
BstX2I RGATCY 6 cut(s) 241, 595, 896, 1896, 2149, 3031
BstXI CCANNNNNNTGG 2 cut(s) 1626, 2045
BstYI RGATCY 6 cut(s) 241, 595, 896, 1896, 2149, 3031
Bsu15I ATCGAT 1 cut(s) 3174
Bsu36I CCTNAGG 1 cut(s) 1046
BsuI GTATCC 1 cut(s) 2471
BsuTUI ATCGAT 1 cut(s) 3174
BtgI CCRYGG 2 cut(s) 1679, 2898
BtgZI GCGATG 2 cut(s) 1061, 3121
BtsCI GGATG 7 cut(s) 504, 832, 1069, 1824, 2137, 2446, 2572
BtsIMutI CAGTG 5 cut(s) 840, 1139, 1693, 2324, 3324
BveI ACCTGC 1 cut(s) 346
Cac8I GCNNGC 5 cut(s) 187, 748, 1042, 2287, 3042
CaiI CAGNNNCTG 1 cut(s) 2585
CciI TCATGA 2 cut(s) 1054, 1399
CfoI GCGC 3 cut(s) 120, 323, 1422
Cfr10I RCCGGY 1 cut(s) 91
Cfr13I GGNCC 7 cut(s) 665, 720, 1709, 2182, 2273, 2669, 2735
ClaI ATCGAT 1 cut(s) 3174
Csp6I GTAC 5 cut(s) 35, 175, 2280, 2476, 2762
CspCI CAANNNNNGTGG 2 cut(s) 1115, 1150
CviQI GTAC 5 cut(s) 35, 175, 2280, 2476, 2762
DraI TTTAAA 2 cut(s) 801, 1356
DraIII CACNNNGTG 2 cut(s) 1555, 2398
DrdI GACNNNNNNGTC 2 cut(s) 1716, 2271
DseDI GACNNNNNNGTC 2 cut(s) 1716, 2271
EaeI YGGCCR 4 cut(s) 96, 1528, 1580, 2901
Eam1104I CTCTTC 4 cut(s) 78, 879, 1270, 1875
EarI CTCTTC 4 cut(s) 78, 879, 1270, 1875
Eco130I CCWWGG 3 cut(s) 1679, 2898, 2912
Eco147I AGGCCT 1 cut(s) 1051
Eco31I GGTCTC 2 cut(s) 1877, 3307
Eco32I GATATC 2 cut(s) 136, 2052
Eco47I GGWCC 4 cut(s) 665, 1709, 2273, 2669
Eco57I CTGAAG 2 cut(s) 293, 2364
Eco81I CCTNAGG 1 cut(s) 1046
EcoNI CCTNNNNNAGG 2 cut(s) 548, 1056
EcoO109I RGGNCCY 2 cut(s) 1709, 2273
EcoRV GATATC 2 cut(s) 136, 2052
EcoT14I CCWWGG 3 cut(s) 1679, 2898, 2912
EcoT22I ATGCAT 2 cut(s) 2022, 2604
ErhI CCWWGG 3 cut(s) 1679, 2898, 2912
FalI AAGNNNNNCTT 4 cut(s) 1234, 1266, 2871, 2903
FaqI GGGAC 2 cut(s) 1722, 3279
FauI CCCGC 1 cut(s) 53
FauNDI CATATG 1 cut(s) 2713
FbaI TGATCA 1 cut(s) 2236
Fnu4HI GCNGC 6 cut(s) 492, 527, 1155, 2250, 2580, 3120
FokI GGATG 7 cut(s) 491, 839, 1056, 1811, 2144, 2453, 2579
Fsp4HI GCNGC 6 cut(s) 492, 527, 1155, 2250, 2580, 3120
GlaI GCGC 3 cut(s) 119, 322, 1421
GluI GCNGC 6 cut(s) 492, 527, 1155, 2250, 2580, 3120
GsaI CCCAGC 2 cut(s) 2014, 2629
HapII CCGG 5 cut(s) 52, 92, 129, 2904, 2922
HhaI GCGC 3 cut(s) 120, 323, 1422
Hin1I GRCGYC 1 cut(s) 1246
Hin6I GCGC 3 cut(s) 118, 321, 1420
HinP1I GCGC 3 cut(s) 118, 321, 1420
HincII GTYRAC 1 cut(s) 2035
HindII GTYRAC 1 cut(s) 2035
HindIII AAGCTT 3 cut(s) 214, 976, 2094
HpaII CCGG 5 cut(s) 52, 92, 129, 2904, 2922
HphI GGTGA 3 cut(s) 706, 1160, 1571
Hpy166II GTNNAC 7 cut(s) 1693, 1909, 2035, 2264, 2720, 2764, 2834
Hpy8I GTNNAC 7 cut(s) 1693, 1909, 2035, 2264, 2720, 2764, 2834
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 6 cut(s) 658, 674, 1052, 1581, 1582, 2911
HpyCH4IV ACGT 2 cut(s) 943, 1246
HpyF10VI GCNNNNNNNGC 6 cut(s) 230, 554, 743, 1163, 2249, 2542
HpySE526I ACGT 2 cut(s) 943, 1246
Hsp92I GRCGYC 1 cut(s) 1246
HspAI GCGC 3 cut(s) 118, 321, 1420
Ksp22I TGATCA 1 cut(s) 2236
LguI GCTCTTC 1 cut(s) 879
LmnI GCTCC 7 cut(s) 44, 375, 1099, 1654, 1780, 2954, 3193
Lsp1109I GCAGC 5 cut(s) 538, 1166, 2236, 2591, 3106
LweI GCATC 7 cut(s) 290, 709, 746, 1027, 1270, 2007, 2029
MaeII ACGT 2 cut(s) 943, 1246
MaeIII GTNAC 6 cut(s) 267, 1021, 1458, 1559, 1721, 3161
MfeI CAATTG 2 cut(s) 162, 775
MflI RGATCY 6 cut(s) 241, 595, 896, 1896, 2149, 3031
MhlI GDGCHC 4 cut(s) 75, 1702, 2011, 2951
MlsI TGGCCA 2 cut(s) 98, 1582
MluNI TGGCCA 2 cut(s) 98, 1582
MlyI GAGTC 4 cut(s) 38, 1132, 2843, 3011
MmeI TCCRAC 1 cut(s) 66
Mox20I TGGCCA 2 cut(s) 98, 1582
Mph1103I ATGCAT 2 cut(s) 2022, 2604
MroXI GAANNNNTTC 2 cut(s) 1665, 2929
MscI TGGCCA 2 cut(s) 98, 1582
MslI CAYNNNNRTG 1 cut(s) 1404
Msp20I TGGCCA 2 cut(s) 98, 1582
MspA1I CMGCKG 1 cut(s) 1747
MspCI CTTAAG 1 cut(s) 979
MspI CCGG 5 cut(s) 52, 92, 129, 2904, 2922
MunI CAATTG 2 cut(s) 162, 775
MvnI CGCG 3 cut(s) 118, 321, 1672
MwoI GCNNNNNNNGC 6 cut(s) 230, 554, 743, 1163, 2249, 2542
NcoI CCATGG 2 cut(s) 1679, 2898
NdeI CATATG 1 cut(s) 2713
NheI GCTAGC 1 cut(s) 3040
NmuCI GTSAC 4 cut(s) 1458, 1559, 1721, 3161
NsiI ATGCAT 2 cut(s) 2022, 2604
NspI RCATGY 2 cut(s) 189, 2289
NspV TTCGAA 1 cut(s) 2305
PaeI GCATGC 2 cut(s) 189, 2289
PagI TCATGA 2 cut(s) 1054, 1399
PasI CCCWGGG 1 cut(s) 1101
PceI AGGCCT 1 cut(s) 1051
PciSI GCTCTTC 1 cut(s) 879
PdmI GAANNNNTTC 2 cut(s) 1665, 2929
PfeI GAWTC 6 cut(s) 1610, 2410, 2891, 3101, 3131, 3203
Pfl23II CGTACG 1 cut(s) 34
PflMI CCANNNNNTGG 3 cut(s) 431, 583, 2625
PfoI TCCNGGA 2 cut(s) 2075, 2463
PkrI GCNGC 6 cut(s) 493, 528, 1156, 2251, 2581, 3121
PleI GAGTC 4 cut(s) 38, 1131, 2843, 3011
PpsI GAGTC 4 cut(s) 38, 1131, 2843, 3011
PpuMI RGGWCCY 2 cut(s) 1709, 2273
PshBI ATTAAT 2 cut(s) 1032, 2820
PsiI TTATAA 1 cut(s) 1599
Psp5II RGGWCCY 2 cut(s) 1709, 2273
PspFI CCCAGC 2 cut(s) 2010, 2625
PspLI CGTACG 1 cut(s) 34
PspPI GGNCC 7 cut(s) 665, 720, 1709, 2182, 2273, 2669, 2735
PspPPI RGGWCCY 2 cut(s) 1709, 2273
PstNI CAGNNNCTG 1 cut(s) 2585
PsuI RGATCY 6 cut(s) 241, 595, 896, 1896, 2149, 3031
RsaI GTAC 5 cut(s) 36, 176, 2281, 2477, 2763
RsaNI GTAC 5 cut(s) 35, 175, 2280, 2476, 2762
RseI CAYNNNNRTG 1 cut(s) 1404
SapI GCTCTTC 1 cut(s) 879
SatI GCNGC 6 cut(s) 492, 527, 1155, 2250, 2580, 3120
Sau96I GGNCC 7 cut(s) 665, 720, 1709, 2182, 2273, 2669, 2735
SchI GAGTC 4 cut(s) 38, 1132, 2843, 3011
SduI GDGCHC 4 cut(s) 75, 1702, 2011, 2951
SfaNI GCATC 7 cut(s) 290, 709, 746, 1027, 1270, 2007, 2029
SfuI TTCGAA 1 cut(s) 2305
SinI GGWCC 4 cut(s) 665, 1709, 2273, 2669
SmiMI CAYNNNNRTG 1 cut(s) 1404
SmlI CTYRAG 4 cut(s) 979, 1959, 3112, 3351
SmoI CTYRAG 4 cut(s) 979, 1959, 3112, 3351
SphI GCATGC 2 cut(s) 189, 2289
SseBI AGGCCT 1 cut(s) 1051
SsiI CCGC 5 cut(s) 60, 265, 492, 1670, 1747
SspI AATATT 2 cut(s) 1396, 2818
StuI AGGCCT 1 cut(s) 1051
StyI CCWWGG 3 cut(s) 1679, 2898, 2912
TaiI ACGT 2 cut(s) 946, 1249
TaqI TCGA 5 cut(s) 610, 2305, 2379, 2614, 3174
TaqII GACCGA 1 cut(s) 3149
TatI WGTACW 3 cut(s) 174, 2475, 2761
TauI GCSGC 1 cut(s) 494
TfiI GAWTC 6 cut(s) 1610, 2410, 2891, 3101, 3131, 3203
TscAI CASTG 5 cut(s) 847, 1139, 1700, 2324, 3324
TseFI GTSAC 4 cut(s) 1458, 1559, 1721, 3161
TseI GCWGC 5 cut(s) 526, 1154, 2249, 2579, 3119
Tsp45I GTSAC 4 cut(s) 1458, 1559, 1721, 3161
TspGWI ACGGA 1 cut(s) 497
TspRI CASTG 5 cut(s) 847, 1139, 1700, 2324, 3324
Van91I CCANNNNNTGG 3 cut(s) 431, 583, 2625
Vha464I CTTAAG 1 cut(s) 979
VpaK11BI GGWCC 4 cut(s) 665, 1709, 2273, 2669
VspI ATTAAT 2 cut(s) 1032, 2820
XagI CCTNNNNNAGG 2 cut(s) 548, 1056
XapI RAATTY 8 cut(s) 206, 623, 710, 1446, 1621, 2291, 3058, 3335
XbaI TCTAGA 1 cut(s) 850
XceI RCATGY 2 cut(s) 189, 2289
XcmI CCANNNNNNNNNTGG 2 cut(s) 730, 2324
XmnI GAANNNNTTC 2 cut(s) 1665, 2929
ZraI GACGTC 1 cut(s) 1247
Zsp2I ATGCAT 2 cut(s) 2022, 2604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.