Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000464.1

Orthogroup ID

OG0001577

Physical Location & Seq

Genomic Coordinates Reverse (-)

75025 .. 75753

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000464.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atggaatcggagcagttgatatcatcgacggggagcggttcccggtatatgcaaatgcgatcggagcagttaacgtcgccgtcgtcgctgttatcgttccggcactcgtccttcgagccgccgcggattttcgacgagttgcccagcgccaccatcgtctccgtctcccgccccgacgccggcgatatcagccccatgcttctctcctacactatcgagttccaatacaagcagtttaagtggcgcctattgaagaaagcatcacaagtattctacttgcattttgcgttgaagaaacgggcatttattgaggaaattcacgaaaagcaggaacaggtgtgtaagttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0006629 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0016298 GO:0016787 GO:0016788 GO:0022622 GO:0032501 GO:0032502 GO:0042578 GO:0044238 GO:0048364 GO:0048731 GO:0048856 GO:0071704 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

PLDc PLDc_2

Protein Analysis

116

Amino Acids

13.52

Weight (kDa)

8.76

Isoelectric Point (pI)

69.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16785 AT3G16785 AT3G16785 AT3G16785 AT3G16785 AT3G16785
fragaria_vesca	FvH4_4g18810 FvH4_6g06940 FvH4_6g06940 FvH4_6g06940
malus_domestica	MD04G1197500.v1.1 MD12G1210300.v1.1 MD13G1162600.v1.1 MD16G1162400.v1.1
prunus_persica	Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.6G317900_v2.0.a1 Prupe.6G317900_v2.0.a1 Prupe.6G317900_v2.0.a1
pyrus_communis	pycom04g17480 pycom13g13890 pycom16g13770
rosa_chinensis	RchiOBHm_Chr3g0456481 RchiOBHm_Chr4g0423621
rosa_laevigata	RLG00000007541 RLG00000025302
rosa_multiflora	Rmu_co8413375.1_g000001 Rmu_sc0000464.1_g000017 Rmu_sc0002607.1_g000011 Rmu_sc0008373.1_g000012 Rmu_sc0016309.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365830 Rroxscaffold_6G00422720
rosa_rugosa	Rorug03G0013400 Rorug03G0013400 Rorug03G0013400 Rorug04G0189100
rosa_samantha	Rh3AG073700 Rh3BG075600 Rh3DG076900 Rh4AG248700 Rh4BG254000 Rh4DG249000
rosa_wichuraiana	Rw3G006320 Rw4G021300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	243
AccBSI	CCGCTC	1 cut(s)	36
AccII	CGCG	1 cut(s)	124
AciI	CCGC	5 cut(s)	36, 119, 122, 124, 169
AcsI	RAATTY	1 cut(s)	315
AcyI	GRCGYC	2 cut(s)	177, 244
AfiI	CCNNNNNNNGG	1 cut(s)	179
AgsI	TTSAA	2 cut(s)	253, 292
Alw26I	GTCTC	2 cut(s)	163, 169
ApoI	RAATTY	1 cut(s)	315
AspLEI	GCGC	2 cut(s)	149, 246
AsuC2I	CCSGG	1 cut(s)	43
BanI	GGYRCC	1 cut(s)	243
BccI	CCATC	1 cut(s)	161
BceAI	ACGGC	1 cut(s)	64
BcnI	CCSGG	1 cut(s)	43
BcoDI	GTCTC	2 cut(s)	163, 169
BfoI	RGCGCY	2 cut(s)	150, 247
BisI	GCNGC	2 cut(s)	119, 122
BlsI	GCNGC	2 cut(s)	120, 123
Bme1390I	CCNGG	1 cut(s)	43
BmiI	GGNNCC	2 cut(s)	40, 245
BmrFI	CCNGG	1 cut(s)	43
BmsI	GCATC	1 cut(s)	269
BpuMI	CCSGG	1 cut(s)	43
BsaHI	GRCGYC	2 cut(s)	177, 244
BsaJI	CCNNGG	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse118I	RCCGGY	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	122
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseYI	CCCAGC	1 cut(s)	143
Bsh1236I	CGCG	1 cut(s)	124
Bsh1285I	CGRYCG	1 cut(s)	62
BshNI	GGYRCC	1 cut(s)	243
BsiEI	CGRYCG	1 cut(s)	62
BsiSI	CCGG	3 cut(s)	43, 100, 180
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmAI	GTCTC	2 cut(s)	163, 169
BsmBI	CGTCTC	2 cut(s)	163, 169
Bsp143I	GATC	1 cut(s)	59
BspACI	CCGC	5 cut(s)	36, 119, 122, 124, 169
BspFNI	CGCG	1 cut(s)	124
BspLI	GGNNCC	2 cut(s)	40, 245
BspT107I	GGYRCC	1 cut(s)	243
BsrBI	CCGCTC	1 cut(s)	36
BsrFI	RCCGGY	1 cut(s)	179
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	122
BssMI	GATC	1 cut(s)	59
BssNI	GRCGYC	2 cut(s)	177, 244
BstACI	GRCGYC	2 cut(s)	177, 244
BstC8I	GCNNGC	1 cut(s)	181
BstDSI	CCRYGG	1 cut(s)	122
BstFNI	CGCG	1 cut(s)	124
BstH2I	RGCGCY	2 cut(s)	150, 247
BstHHI	GCGC	2 cut(s)	149, 246
BstKTI	GATC	1 cut(s)	62
BstMAI	GTCTC	2 cut(s)	163, 169
BstMBI	GATC	1 cut(s)	59
BstMCI	CGRYCG	1 cut(s)	62
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 85, 189
BstSCI	CCNGG	1 cut(s)	41
BstUI	CGCG	1 cut(s)	124
BtgI	CCRYGG	1 cut(s)	122
Cac8I	GCNNGC	1 cut(s)	181
CfoI	GCGC	2 cut(s)	149, 246
Cfr10I	RCCGGY	1 cut(s)	179
Cfr42I	CCGCGG	1 cut(s)	125
CseI	GACGC	1 cut(s)	185
CviAII	CATG	1 cut(s)	196
CviJI	RGCY	2 cut(s)	118, 192
CviKI_1	RGCY	2 cut(s)	118, 192
DinI	GGCGCC	1 cut(s)	245
DpnI	GATC	1 cut(s)	61
DpnII	GATC	1 cut(s)	59
Eco32I	GATATC	2 cut(s)	21, 187
EcoRV	GATATC	2 cut(s)	21, 187
EgeI	GGCGCC	1 cut(s)	245
EheI	GGCGCC	1 cut(s)	245
Esp3I	CGTCTC	2 cut(s)	163, 169
FaeI	CATG	1 cut(s)	199
FaiI	YATR	3 cut(s)	48, 50, 197
FatI	CATG	1 cut(s)	195
FauI	CCCGC	1 cut(s)	176
Fnu4HI	GCNGC	2 cut(s)	119, 122
Fsp4HI	GCNGC	2 cut(s)	119, 122
GlaI	GCGC	2 cut(s)	148, 245
GluI	GCNGC	2 cut(s)	119, 122
GsaI	CCCAGC	1 cut(s)	147
HaeII	RGCGCY	2 cut(s)	150, 247
HapII	CCGG	3 cut(s)	43, 100, 180
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	2 cut(s)	149, 246
Hin1I	GRCGYC	2 cut(s)	177, 244
Hin1II	CATG	1 cut(s)	199
Hin6I	GCGC	2 cut(s)	147, 244
HinP1I	GCGC	2 cut(s)	147, 244
HincII	GTYRAC	1 cut(s)	72
HindII	GTYRAC	1 cut(s)	72
HinfI	GANTC	1 cut(s)	5
HpaI	GTTAAC	1 cut(s)	72
HpaII	CCGG	3 cut(s)	43, 100, 180
Hpy166II	GTNNAC	1 cut(s)	72
Hpy188I	TCNGA	2 cut(s)	10, 64
Hpy188III	TCNNGA	1 cut(s)	320
Hpy8I	GTNNAC	1 cut(s)	72
Hpy99I	CGWCG	6 cut(s)	31, 79, 85, 88, 137, 179
HpyAV	CCTTC	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	74
HpyCH4V	TGCA	2 cut(s)	52, 280
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 85, 189
HpySE526I	ACGT	1 cut(s)	74
Hsp92I	GRCGYC	2 cut(s)	177, 244
Hsp92II	CATG	1 cut(s)	199
HspAI	GCGC	2 cut(s)	147, 244
KasI	GGCGCC	1 cut(s)	243
KroI	GCCGGC	1 cut(s)	179
KroNI	GCCGGC	1 cut(s)	181
KspAI	GTTAAC	1 cut(s)	72
KspI	CCGCGG	1 cut(s)	125
Kzo9I	GATC	1 cut(s)	59
LmnI	GCTCC	3 cut(s)	10, 33, 64
LpnPI	CCDG	6 cut(s)	56, 113, 157, 193, 314, 320
LweI	GCATC	1 cut(s)	269
MaeII	ACGT	1 cut(s)	74
MalI	GATC	1 cut(s)	61
MbiI	CCGCTC	1 cut(s)	36
MboI	GATC	1 cut(s)	59
MboII	GAAGA	2 cut(s)	265, 304
MluCI	AATT	1 cut(s)	315
Mly113I	GGCGCC	1 cut(s)	244
MnlI	CCTC	1 cut(s)	304
MreI	CGCCGGCG	1 cut(s)	179
MroNI	GCCGGC	1 cut(s)	179
MseI	TTAA	2 cut(s)	71, 237
MspA1I	CMGCKG	1 cut(s)	124
MspI	CCGG	3 cut(s)	43, 100, 180
MspR9I	CCNGG	1 cut(s)	43
MvnI	CGCG	1 cut(s)	124
MwoI	GCNNNNNNNGC	3 cut(s)	64, 85, 189
NaeI	GCCGGC	1 cut(s)	181
NarI	GGCGCC	1 cut(s)	244
NciI	CCSGG	1 cut(s)	43
NdeII	GATC	1 cut(s)	59
NgoMIV	GCCGGC	1 cut(s)	179
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	2 cut(s)	40, 245
PcsI	WCGNNNNNNNCGW	2 cut(s)	80, 92
PdiI	GCCGGC	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	120, 123
Ple19I	CGATCG	1 cut(s)	62
PluTI	GGCGCC	1 cut(s)	247
PspFI	CCCAGC	1 cut(s)	143
PspN4I	GGNNCC	2 cut(s)	40, 245
PvuI	CGATCG	1 cut(s)	62
SacII	CCGCGG	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	71, 237
SatI	GCNGC	2 cut(s)	119, 122
Sau3AI	GATC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	43
SetI	ASST	2 cut(s)	77, 339
SfaNI	GCATC	1 cut(s)	269
SfoI	GGCGCC	1 cut(s)	245
Sfr303I	CCGCGG	1 cut(s)	125
SgrAI	CRCCGGYG	1 cut(s)	179
SgrBI	CCGCGG	1 cut(s)	125
Sse9I	AATT	1 cut(s)	315
SsiI	CCGC	5 cut(s)	36, 119, 122, 124, 169
SspDI	GGCGCC	1 cut(s)	243
StyD4I	CCNGG	1 cut(s)	41
TaiI	ACGT	1 cut(s)	77
TaqI	TCGA	4 cut(s)	26, 114, 132, 216
TasI	AATT	1 cut(s)	315
TauI	GCSGC	2 cut(s)	121, 124
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	2 cut(s)	71, 237
Tru9I	TTAA	2 cut(s)	71, 237
TspGWI	ACGGA	1 cut(s)	151
XapI	RAATTY	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.