Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001577

Physical Location & Seq

Genomic Coordinates Forward (+)

22621978 .. 22630914

Gene Structure 8937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g18810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3330 bp

ATGGAATCGGAGCAGTTGATATCGACCGGGAGCGGTTCCGGTTCCGGTTCCCGGTATGTGCAAATGCGATCGGAGCAGTTAATGTCGCCGTCGTCGCTCTTCTCCTTCCGCCACTCGTCTTTTGAGCCGGCGAGGATCTTCGACGAGTTGCCCAGCGCCACCATCGTCTCCGTCTCTCGTCCTGACGCCGGCGATATCAGCCCCATGCTTCTCTCTTACACCATCGAGTTCCAATACAAGCAGTTTAAGTGGCGCCTAGTGAAGAAAGCATCACATGTATTCTACTTGCATTTTGCATTGAAGAAACGGGCGTTTATTGAGGAAATTCAGGAAAAGCAGGAACAGGTTAAAGAATGGCTTCAAAATCTAGGAATAGGAGATCATACGGATGTGGTGCACGATGATGAGGATGTTGATGATGAGACTGTTCCCTTGCATCACAATGATGAAAGTGCTAAAAACAGAGATGTTCCATCTAGTGCAGCTCTACCGATCATTCGGCCAGCGCTTGGCAGGCAGCAATCCATTTCAGACAGATCAAAGATTGCAATGCAAGGATATCTTAATCACTTTCTTGGAAACATGGACATTGTGAACTCTCGAGAGGTCTGCAAGTTTTTGGAGGTCTCTATGCTATCATTTTCCCCAGAATACGGCCCTAAGCTGAAAGAAGATTTTGTAATGGTGAAACATCTACCAAAGTTGCCAAAGGATGATCCTTCCGGGAAATGTTGTTCATGTGGTTGGTTCAATTGTTGTAATGACAACTGGCAAAAGGTTTGGGCTGTATTGAAACCAGGATTCTTGGCCTTTCTGTCAGATCCTTTTGATACCCAACCTTTAGACATAATAGTATTTGATGTACTACCAGGCTCTGATGGGAATGGGGATGGCCGTGTATCTCTAGCAAAAGAGATAAAAGATAGAAATCCACTACGACATGCATTTAAGGTGGCTTGTGGAAGCCGGAGCATTAAGTTAAGAGTTAAGAGTAGTAGTAAAGTTAAAGATTGGGTAGCTTCAATCAATGATGCGGGACTCAGACCTCCTGAAGGTTGGTGTCATCCTCACCGTTTTGGCTCTTTTGCGCCTCCAAGAGGCTTGGCTGAAGATGGTAGTCAGGCTCAATGGTTTGTAGACGGTCGGGCGGCATTTGAAGCTATTGCTTCTGCAATCGAGGATGCAAAATCAGAGATATTTATTTGTGGCTGGTGGCTGTGTCCAGAATTGTACATGCGGCGTCCATTTCATACTCATGCTTCTTCTAAACTTGATTCTCTGTTGGAAGCAAAAGCTAGGGAAGGGGTTCAGATTTATATACTTCTCTATAAAGAGGTAGCACTTGCTCTGAAAATCAACAGCGTTTATAGCAAGAGAAAGCTTCTTGGGATTCATGAGAATGTGAGGGTACTACGTTATCCTGACCACTTTTCTAGTGGTGTCTACTTATGGTCCCACCATGAAAAACTTGTCATTGTTGATTATCAGATTTGCTTTCTTGGAGGACTTGACTTATGCTTTGGTCGTTATGATACTGCTGAACATAAAGTGGGTGACTGCCCTCCTAACATTTGGCCTGGAAAGGACTATTACAATCCCAGGGAATCTGAACCAAACTCGTGGGAGGATACGATGAAAGATGAGTTGGATCGTGAAAAATATCCTCGCATGCCTTGGCATGACGTACACTGTGCTATTTGGGGACCTCCCTGCCGTGATGTAGCTAGGCATTTTGTTCAGCGGTGGAACTATGCAAAGAGAAATAAAGCTCCAAACGAGCAGGCAATCCCTTTACTGATGCCGCAGCACCACATGGTGATTCCTCATTACATGGGAAGAAATTCGGACATGGAGATTGAAAATAAGAATGCTAGCAATGGTAAAGACATGACAAGGCAGGATTCCTTCTTGTCGAGATCATCTTATCAAGATATCCCCCTGCTTATTCCCCAAGAGCCAAATGAAAGTCCAAGACCAAATGGGGTGGACTCTCCTCATTGCCTCAGTCAGCCAAACAGCAATCGTGCTTTCCCTTTTCGGAAGACAAAGATTGAACCAGTAGGTCCAGATACGCCAATGAGGGGATTTGTAGATGACTTTGATTCTTTGGATCTACATGGAAAATTGGCTTCAGATGGGGTGGCACATCCTGCAATCAGAAGTTCAGTTCCAGAGTGGTGGGAAACACAAGAACGGGGAAATAAGGGCGGTCTCACAGATGAATCAGGACAAGTAGGTCCTTGTAGTTCATGCCGATGTCAGGTTATCAGAAGTGTCAGTCAGTGGTCATCAGGAACAAGCCAAGTTGAAGATAGCATTCATAGTGCTTATTGTTCTCTTATCGACAAAGCTGAGCACTTTATTTACATTGAGAATCAATTTTTCATCTCAGGTCTTTCAGGAGATGAAATAATACGGAATCGTGTGTTAGAAGCATTATTCCGTCGTATTATGAGAGCATACAATGATAAGAAGTGTTTTAGAGTTATAATTGTCATACCACTCTTACCCGGATTTCAGGGTGGTTTGGATGATGCTGGCGCTGCATCTGTGAGAGCTGTTATGCATTGGCAATATCGAACGATTTGCAGAGGGCATAATTCAATTCTACACAATTTATATGAACTTCTTGGTCCAAAGACACACGACTACATTTCTTTCTATGGCCTTAGAGCTTATGGTAAACTATTTGATGGTGGTCCTGTGGCCTCCAGTCAGGTATATGTGCATAGTAAAATCATGATTGTCGATGACTGTACAACTTTAATTGGTTCAGCTAACATCAATGATAGGAGTTTGCTTGGTTCAAGAGATTCTGAGATTGGTCTTCTTATTGAAGACAAAGAGTTGGTTAATTCATATATGGGAGGAAAACCATGGAAGGCTGGAAAATTCTCACTGAGTCTTCGCCTGTCGCTGTGGTCTGAACATCTTGGTGTTAATGCTGGAGAGATGGACCAAATAATTGATCCTACTGTTGATTCAACTTACAAGGATATATGGATGGCAACAGCGAAGACAAATACCACAATCTACCAAGATGTCTTTTCCTGTGTACCAAATGATTTTATACATTCTAGAGCTGCATTTAGACAAAGCATAGCCTTCTGGAAGGAGAAGGTAGGGCACACAACCATTGATTTAGGAATTGCTCCCAAGACGCTAGAATCATATCAAAATGGAGATGTCAAGAAGGCAGATCCTATGGAGAGGTTAGAGTCTATAAAGGGGCATCTTGTTTCTTTCCCTTTGGATTTCATGCTGAAGGAAGATTTAAGACCCGTGTTCAATGAGAGTGAGTACTATGCGTCACCGCAGGTATTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0006629 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0016298 GO:0016787 GO:0016788 GO:0022622 GO:0032501 GO:0032502 GO:0042578 GO:0044238 GO:0048364 GO:0048731 GO:0048856 GO:0071704 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

PLDc PLDc_2

Protein Analysis

1110

Amino Acids

125.59

Weight (kDa)

6.3

Isoelectric Point (pI)

45.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLDc	PF00614	482 - 509	3.9e-06	Phospholipase D Active site motif
PLDc_2	PF13091	891 - 954	1.2e-08	PLD-like domain
PLDc	PF00614	909 - 932	2.5e-06	Phospholipase D Active site motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16785 AT3G16785 AT3G16785 AT3G16785 AT3G16785 AT3G16785
fragaria_vesca	FvH4_4g18810 FvH4_6g06940 FvH4_6g06940 FvH4_6g06940
malus_domestica	MD04G1197500.v1.1 MD12G1210300.v1.1 MD13G1162600.v1.1 MD16G1162400.v1.1
prunus_persica	Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.6G317900_v2.0.a1 Prupe.6G317900_v2.0.a1 Prupe.6G317900_v2.0.a1
pyrus_communis	pycom04g17480 pycom13g13890 pycom16g13770
rosa_chinensis	RchiOBHm_Chr3g0456481 RchiOBHm_Chr4g0423621
rosa_laevigata	RLG00000007541 RLG00000025302
rosa_multiflora	Rmu_co8413375.1_g000001 Rmu_sc0000464.1_g000017 Rmu_sc0002607.1_g000011 Rmu_sc0008373.1_g000012 Rmu_sc0016309.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365830 Rroxscaffold_6G00422720
rosa_rugosa	Rorug03G0013400 Rorug03G0013400 Rorug03G0013400 Rorug04G0189100
rosa_samantha	Rh3AG073700 Rh3BG075600 Rh3DG076900 Rh4AG248700 Rh4BG254000 Rh4DG249000
rosa_wichuraiana	Rw3G006320 Rw4G021300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2489
AasI	GACNNNNNNGTC	1 cut(s)	2235
Acc36I	ACCTGC	1 cut(s)	3307
AccB1I	GGYRCC	1 cut(s)	252
AccB7I	CCANNNNNTGG	1 cut(s)	509
AccBSI	CCGCTC	1 cut(s)	33
AccI	GTMKAC	2 cut(s)	1137, 1443
AciI	CCGC	9 cut(s)	33, 109, 1034, 1148, 1237, 1741, 1802, 2208, 3314
AclWI	GGATC	7 cut(s)	143, 710, 815, 1656, 2118, 2963, 3194
AcoI	YGGCCR	2 cut(s)	500, 892
AcsI	RAATTY	3 cut(s)	324, 1840, 2891
AcuI	CTGAAG	4 cut(s)	1071, 1128, 2115, 3284
AcyI	GRCGYC	3 cut(s)	186, 253, 1240
AdeI	CACNNNGTG	1 cut(s)	1816
AfaI	GTAC	7 cut(s)	864, 1232, 1410, 1686, 2758, 3057, 3302
AfeI	AGCGCT	1 cut(s)	507
AfiI	CCNNNNNNNGG	8 cut(s)	51, 188, 509, 653, 1052, 1097, 2081, 2260
AflIII	ACRYGT	1 cut(s)	274
AjnI	CCWGG	4 cut(s)	796, 868, 1576, 1598
AjuI	GAANNNNNNNTTGG	2 cut(s)	1628, 1660
AloI	GAACNNNNNNTCC	2 cut(s)	718, 750
Alw21I	GWGCWC	2 cut(s)	399, 2358
Alw26I	GTCTC	5 cut(s)	172, 178, 416, 631, 2216
Alw44I	GTGCAC	1 cut(s)	395
AlwI	GGATC	7 cut(s)	143, 710, 815, 1656, 2118, 2963, 3194
AlwNI	CAGNNNCTG	1 cut(s)	875
Ama87I	CYCGRG	1 cut(s)	600
Aor51HI	AGCGCT	1 cut(s)	507
AoxI	GGCC	7 cut(s)	500, 655, 807, 892, 1574, 2665, 2706
ApaLI	GTGCAC	1 cut(s)	395
ApeKI	GCWGC	5 cut(s)	482, 517, 1804, 2543, 3083
ApoI	RAATTY	3 cut(s)	324, 1840, 2891
ArsI	GACNNNNNNTTYG	2 cut(s)	1502, 1534
Asp700I	GAANNNNTTC	3 cut(s)	357, 1305, 1840
AspLEI	GCGC	5 cut(s)	158, 255, 508, 1090, 2543
AspS9I	GGNCC	8 cut(s)	656, 1452, 1703, 2063, 2237, 2633, 2699, 2956
AsuC2I	CCSGG	4 cut(s)	28, 52, 724, 2511
AsuHPI	GGTGA	5 cut(s)	697, 1061, 1565, 1828, 3303
AsuNHI	GCTAGC	1 cut(s)	1871
AvaI	CYCGRG	1 cut(s)	600
AvaII	GGWCC	7 cut(s)	1452, 1703, 2063, 2237, 2633, 2699, 2956
BaeGI	GKGCMC	2 cut(s)	399, 3129
BanI	GGYRCC	1 cut(s)	252
BauI	CACGAG	1 cut(s)	1618
BbsI	GAAGAC	5 cut(s)	2048, 2819, 2844, 2897, 3023
Bbv12I	GWGCWC	2 cut(s)	399, 2358
BbvI	GCAGC	5 cut(s)	494, 529, 1816, 2530, 3070
BceAI	ACGGC	4 cut(s)	73, 670, 879, 1698
BcgI	CGANNNNNNTGC	4 cut(s)	591, 625, 2568, 2602
BciT130I	CCWGG	4 cut(s)	798, 870, 1578, 1600
BciVI	GTATCC	1 cut(s)	1621
BcnI	CCSGG	4 cut(s)	28, 52, 724, 2511
BcoDI	GTCTC	5 cut(s)	172, 178, 416, 631, 2216
BfoI	RGCGCY	4 cut(s)	159, 256, 509, 2544
BfuAI	ACCTGC	1 cut(s)	3307
BfuI	GTATCC	1 cut(s)	1621
BisI	GCNGC	8 cut(s)	483, 518, 1149, 1238, 1802, 1805, 2544, 3084
BlpI	GCTNAGC	1 cut(s)	2352
BlsI	GCNGC	8 cut(s)	484, 519, 1150, 1239, 1803, 1806, 2545, 3085
BmcAI	AGTACT	1 cut(s)	3302
Bme1390I	CCNGG	8 cut(s)	28, 52, 724, 798, 870, 1578, 1600, 2511
Bme18I	GGWCC	7 cut(s)	1452, 1703, 2063, 2237, 2633, 2699, 2956
BmeT110I	CYCGRG	1 cut(s)	600
BmgT120I	GGNCC	8 cut(s)	656, 1452, 1703, 2063, 2237, 2633, 2699, 2956
BmiI	GGNNCC	6 cut(s)	37, 43, 49, 254, 1454, 1704
BmrFI	CCNGG	8 cut(s)	28, 52, 724, 798, 870, 1578, 1600, 2511
BmsI	GCATC	8 cut(s)	278, 445, 1021, 1171, 1788, 2524, 2555, 3241
BmtI	GCTAGC	1 cut(s)	1875
BpiI	GAAGAC	5 cut(s)	2048, 2819, 2844, 2897, 3023
BpmI	CTGGAG	2 cut(s)	2695, 2967
Bpu10I	CCTNAGC	1 cut(s)	660
Bpu1102I	GCTNAGC	1 cut(s)	2352
BpuMI	CCSGG	4 cut(s)	28, 52, 724, 2511
BsaBI	GATNNNNATC	1 cut(s)	927
BsaHI	GRCGYC	3 cut(s)	186, 253, 1240
BsaI	GGTCTC	2 cut(s)	631, 2216
BsaJI	CCNNGG	4 cut(s)	1598, 1599, 1673, 2876
BsaWI	WCCGGW	2 cut(s)	38, 44
Bsc4I	CCNNNNNNNGG	8 cut(s)	51, 188, 509, 653, 1052, 1097, 2081, 2260
Bse118I	RCCGGY	2 cut(s)	127, 188
Bse1I	ACTGG	3 cut(s)	773, 2057, 2712
Bse3DI	GCAATG	3 cut(s)	555, 1882, 1996
Bse8I	GATNNNNATC	1 cut(s)	927
BseBI	CCWGG	4 cut(s)	798, 870, 1578, 1600
BseDI	CCNNGG	4 cut(s)	1598, 1599, 1673, 2876
BseGI	GGATG	9 cut(s)	394, 415, 718, 895, 1063, 1186, 2146, 2536, 3009
BseJI	GATNNNNATC	1 cut(s)	927
BseLI	CCNNNNNNNGG	8 cut(s)	51, 188, 509, 653, 1052, 1097, 2081, 2260
BseMI	GCAATG	3 cut(s)	555, 1882, 1996
BseMII	CTCAG	6 cut(s)	1054, 2017, 2343, 2403, 2808, 2891
BseNI	ACTGG	3 cut(s)	773, 2057, 2712
BseRI	GAGGAG	1 cut(s)	1983
BseSI	GKGCMC	2 cut(s)	399, 3129
BseXI	GCAGC	5 cut(s)	494, 529, 1816, 2530, 3070
BseYI	CCCAGC	1 cut(s)	152
BsgI	GTGCAG	1 cut(s)	501
Bsh1285I	CGRYCG	3 cut(s)	27, 71, 1144
BshFI	GGCC	7 cut(s)	502, 657, 809, 894, 1576, 2667, 2708
BshNI	GGYRCC	1 cut(s)	252
BsiEI	CGRYCG	3 cut(s)	27, 71, 1144
BsiHKAI	GWGCWC	2 cut(s)	399, 2358
BsiHKCI	CYCGRG	1 cut(s)	600
BsiSI	CCGG	9 cut(s)	27, 39, 45, 52, 128, 189, 723, 967, 2511
BslFI	GGGAC	3 cut(s)	1050, 1438, 1716
BslI	CCNNNNNNNGG	8 cut(s)	51, 188, 509, 653, 1052, 1097, 2081, 2260
BsmAI	GTCTC	5 cut(s)	172, 178, 416, 631, 2216
BsmBI	CGTCTC	2 cut(s)	172, 178
BsmFI	GGGAC	3 cut(s)	1050, 1438, 1716
BsmI	GAATGC	2 cut(s)	1873, 2316
BsnI	GGCC	7 cut(s)	502, 657, 809, 894, 1576, 2667, 2708
Bso31I	GGTCTC	2 cut(s)	631, 2216
BsoBI	CYCGRG	1 cut(s)	600
Bsp1286I	GDGCHC	3 cut(s)	399, 2358, 3129
Bsp1407I	TGTACA	2 cut(s)	1230, 2756
Bsp1720I	GCTNAGC	1 cut(s)	2352
Bsp19I	CCATGG	1 cut(s)	2876
BspACI	CCGC	9 cut(s)	33, 109, 1034, 1148, 1237, 1741, 1802, 2208, 3314
BspANI	GGCC	7 cut(s)	502, 657, 809, 894, 1576, 2667, 2708
BspCNI	CTCAG	6 cut(s)	1053, 2016, 2344, 2402, 2809, 2892
BspHI	TCATGA	2 cut(s)	1393, 2739
BspLI	GGNNCC	6 cut(s)	37, 43, 49, 254, 1454, 1704
BspMI	ACCTGC	1 cut(s)	3307
BspOI	GCTAGC	1 cut(s)	1875
BspPI	GGATC	7 cut(s)	143, 710, 815, 1656, 2118, 2963, 3194
BspQI	GCTCTTC	1 cut(s)	104
BspT107I	GGYRCC	1 cut(s)	252
BspTNI	GGTCTC	2 cut(s)	631, 2216
BsrBI	CCGCTC	1 cut(s)	33
BsrDI	GCAATG	3 cut(s)	555, 1882, 1996
BsrFI	RCCGGY	2 cut(s)	127, 188
BsrGI	TGTACA	2 cut(s)	1230, 2756
BsrI	ACTGG	3 cut(s)	773, 2057, 2712
BssAI	RCCGGY	2 cut(s)	127, 188
BssECI	CCNNGG	4 cut(s)	1598, 1599, 1673, 2876
BssNI	GRCGYC	3 cut(s)	186, 253, 1240
BssSI	CACGAG	1 cut(s)	1618
BssT1I	CCWWGG	2 cut(s)	1673, 2876
Bst2BI	CACGAG	1 cut(s)	1618
Bst2UI	CCWGG	4 cut(s)	798, 870, 1578, 1600
Bst4CI	ACNGT	6 cut(s)	427, 1073, 1142, 1691, 2756, 2977
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	3 cut(s)	186, 253, 1240
BstAPI	GCANNNNNTGC	1 cut(s)	2150
BstAUI	TGTACA	2 cut(s)	1230, 2756
BstC8I	GCNNGC	8 cut(s)	129, 190, 504, 515, 1670, 1782, 1873, 2539
BstDEI	CTNAG	8 cut(s)	660, 1040, 2003, 2352, 2389, 2669, 2817, 2900
BstDSI	CCRYGG	1 cut(s)	2876
BstENI	CCTNNNNNAGG	2 cut(s)	1050, 1095
BstF5I	GGATG	9 cut(s)	394, 415, 718, 895, 1063, 1186, 2146, 2536, 3009
BstH2I	RGCGCY	4 cut(s)	159, 256, 509, 2544
BstHHI	GCGC	5 cut(s)	158, 255, 508, 1090, 2543
BstMAI	GTCTC	5 cut(s)	172, 178, 416, 631, 2216
BstMCI	CGRYCG	3 cut(s)	27, 71, 1144
BstMWI	GCNNNNNNNGC	8 cut(s)	73, 94, 198, 514, 1157, 1368, 2150, 2543
BstNI	CCWGG	4 cut(s)	798, 870, 1578, 1600
BstNSI	RCATGY	4 cut(s)	278, 944, 1237, 1672
BstSCI	CCNGG	8 cut(s)	26, 50, 722, 796, 868, 1576, 1598, 2509
BstSLI	GKGCMC	2 cut(s)	399, 3129
BstV1I	GCAGC	5 cut(s)	494, 529, 1816, 2530, 3070
BstV2I	GAAGAC	5 cut(s)	2048, 2819, 2844, 2897, 3023
BstX2I	RGATCY	4 cut(s)	135, 820, 2110, 3199
BstXI	CCANNNNNNTGG	2 cut(s)	1620, 2178
BstYI	RGATCY	4 cut(s)	135, 820, 2110, 3199
BsuI	GTATCC	1 cut(s)	1621
BsuRI	GGCC	7 cut(s)	502, 657, 809, 894, 1576, 2667, 2708
BtgI	CCRYGG	1 cut(s)	2876
BtsCI	GGATG	9 cut(s)	394, 415, 718, 895, 1063, 1186, 2146, 2536, 3009
BtsIMutI	CAGTG	3 cut(s)	1687, 2288, 2897
BveI	ACCTGC	1 cut(s)	3307
Cac8I	GCNNGC	8 cut(s)	129, 190, 504, 515, 1670, 1782, 1873, 2539
CaiI	CAGNNNCTG	1 cut(s)	875
CciI	TCATGA	2 cut(s)	1393, 2739
CfoI	GCGC	5 cut(s)	158, 255, 508, 1090, 2543
Cfr10I	RCCGGY	2 cut(s)	127, 188
Cfr13I	GGNCC	8 cut(s)	656, 1452, 1703, 2063, 2237, 2633, 2699, 2956
CseI	GACGC	4 cut(s)	194, 1229, 3169, 3297
Csp6I	GTAC	7 cut(s)	863, 1231, 1409, 1685, 2757, 3056, 3301
CspCI	CAANNNNNGTGG	2 cut(s)	1965, 2000
CviQI	GTAC	7 cut(s)	863, 1231, 1409, 1685, 2757, 3056, 3301
DdeI	CTNAG	8 cut(s)	660, 1040, 2003, 2352, 2389, 2669, 2817, 2900
DinI	GGCGCC	1 cut(s)	254
DraIII	CACNNNGTG	1 cut(s)	1816
DrdI	GACNNNNNNGTC	1 cut(s)	2235
DseDI	GACNNNNNNGTC	1 cut(s)	2235
EaeI	YGGCCR	2 cut(s)	500, 892
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
EciI	GGCGGA	1 cut(s)	98
Eco130I	CCWWGG	2 cut(s)	1673, 2876
Eco31I	GGTCTC	2 cut(s)	631, 2216
Eco32I	GATATC	4 cut(s)	21, 196, 560, 1933
Eco47I	GGWCC	7 cut(s)	1452, 1703, 2063, 2237, 2633, 2699, 2956
Eco47III	AGCGCT	1 cut(s)	507
Eco57I	CTGAAG	4 cut(s)	1071, 1128, 2115, 3284
Eco88I	CYCGRG	1 cut(s)	600
EcoNI	CCTNNNNNAGG	2 cut(s)	1050, 1095
EcoO109I	RGGNCCY	2 cut(s)	1703, 2237
EcoRII	CCWGG	4 cut(s)	796, 868, 1576, 1598
EcoRV	GATATC	4 cut(s)	21, 196, 560, 1933
EcoT14I	CCWWGG	2 cut(s)	1673, 2876
EcoT22I	ATGCAT	2 cut(s)	946, 2568
EgeI	GGCGCC	1 cut(s)	254
EheI	GGCGCC	1 cut(s)	254
ErhI	CCWWGG	2 cut(s)	1673, 2876
Esp3I	CGTCTC	2 cut(s)	172, 178
FalI	AAGNNNNNCTT	4 cut(s)	342, 374, 546, 578
FaqI	GGGAC	3 cut(s)	1050, 1438, 1716
FauI	CCCGC	1 cut(s)	1027
FblI	GTMKAC	2 cut(s)	1137, 1443
Fnu4HI	GCNGC	8 cut(s)	483, 518, 1149, 1238, 1802, 1805, 2544, 3084
FokI	GGATG	9 cut(s)	401, 422, 725, 902, 1050, 1193, 2133, 2543, 3016
Fsp4HI	GCNGC	8 cut(s)	483, 518, 1149, 1238, 1802, 1805, 2544, 3084
GlaI	GCGC	5 cut(s)	157, 254, 507, 1089, 2542
GluI	GCNGC	8 cut(s)	483, 518, 1149, 1238, 1802, 1805, 2544, 3084
GsaI	CCCAGC	1 cut(s)	156
GsuI	CTGGAG	2 cut(s)	2695, 2967
HaeII	RGCGCY	4 cut(s)	159, 256, 509, 2544
HaeIII	GGCC	7 cut(s)	502, 657, 809, 894, 1576, 2667, 2708
HapII	CCGG	9 cut(s)	27, 39, 45, 52, 128, 189, 723, 967, 2511
HgaI	GACGC	4 cut(s)	194, 1229, 3169, 3297
HhaI	GCGC	5 cut(s)	158, 255, 508, 1090, 2543
Hin1I	GRCGYC	3 cut(s)	186, 253, 1240
Hin6I	GCGC	5 cut(s)	156, 253, 506, 1088, 2541
HinP1I	GCGC	5 cut(s)	156, 253, 506, 1088, 2541
HindIII	AAGCTT	1 cut(s)	1379
HpaII	CCGG	9 cut(s)	27, 39, 45, 52, 128, 189, 723, 967, 2511
HphI	GGTGA	5 cut(s)	697, 1061, 1565, 1828, 3303
Hpy166II	GTNNAC	8 cut(s)	397, 595, 1138, 1444, 1687, 1987, 2684, 3056
Hpy8I	GTNNAC	8 cut(s)	397, 595, 1138, 1444, 1687, 1987, 2684, 3056
Hpy99I	CGWCG	4 cut(s)	94, 97, 146, 2448
HpyCH4III	ACNGT	6 cut(s)	427, 1073, 1142, 1691, 2756, 2977
HpyCH4IV	ACGT	2 cut(s)	1414, 1683
HpyF10VI	GCNNNNNNNGC	8 cut(s)	73, 94, 198, 514, 1157, 1368, 2150, 2543
HpyF3I	CTNAG	8 cut(s)	660, 1040, 2003, 2352, 2389, 2669, 2817, 2900
HpySE526I	ACGT	2 cut(s)	1414, 1683
Hsp92I	GRCGYC	3 cut(s)	186, 253, 1240
HspAI	GCGC	5 cut(s)	156, 253, 506, 1088, 2541
KasI	GGCGCC	1 cut(s)	252
KroI	GCCGGC	2 cut(s)	127, 188
KroNI	GCCGGC	2 cut(s)	129, 190
LguI	GCTCTTC	1 cut(s)	104
LmnI	GCTCC	6 cut(s)	10, 30, 73, 969, 1774, 3157
Lsp1109I	GCAGC	5 cut(s)	494, 529, 1816, 2530, 3070
LweI	GCATC	8 cut(s)	278, 445, 1021, 1171, 1788, 2524, 2555, 3241
MaeII	ACGT	2 cut(s)	1414, 1683
MaeIII	GTNAC	2 cut(s)	1553, 3309
MbiI	CCGCTC	1 cut(s)	33
MfeI	CAATTG	1 cut(s)	751
MflI	RGATCY	4 cut(s)	135, 820, 2110, 3199
MhlI	GDGCHC	3 cut(s)	399, 2358, 3129
Mly113I	GGCGCC	1 cut(s)	253
MlyI	GAGTC	4 cut(s)	1032, 1982, 2911, 3227
MmeI	TCCRAC	2 cut(s)	1263, 1626
Mph1103I	ATGCAT	2 cut(s)	946, 2568
MreI	CGCCGGCG	1 cut(s)	188
MroNI	GCCGGC	2 cut(s)	127, 188
MroXI	GAANNNNTTC	3 cut(s)	357, 1305, 1840
MslI	CAYNNNNRTG	8 cut(s)	387, 402, 441, 444, 1254, 1398, 2254, 2934
MspA1I	CMGCKG	1 cut(s)	1741
MspI	CCGG	9 cut(s)	27, 39, 45, 52, 128, 189, 723, 967, 2511
MspR9I	CCNGG	8 cut(s)	28, 52, 724, 798, 870, 1578, 1600, 2511
MunI	CAATTG	1 cut(s)	751
Mva1269I	GAATGC	2 cut(s)	1873, 2316
MvaI	CCWGG	4 cut(s)	798, 870, 1578, 1600
MwoI	GCNNNNNNNGC	8 cut(s)	73, 94, 198, 514, 1157, 1368, 2150, 2543
NaeI	GCCGGC	2 cut(s)	129, 190
NarI	GGCGCC	1 cut(s)	253
NciI	CCSGG	4 cut(s)	28, 52, 724, 2511
NcoI	CCATGG	1 cut(s)	2876
NgoMIV	GCCGGC	2 cut(s)	127, 188
NheI	GCTAGC	1 cut(s)	1871
NlaIV	GGNNCC	6 cut(s)	37, 43, 49, 254, 1454, 1704
NmuCI	GTSAC	2 cut(s)	1553, 3309
NsiI	ATGCAT	2 cut(s)	946, 2568
NspI	RCATGY	4 cut(s)	278, 944, 1237, 1672
PaeI	GCATGC	1 cut(s)	1672
PaeR7I	CTCGAG	1 cut(s)	600
PagI	TCATGA	2 cut(s)	1393, 2739
PasI	CCCWGGG	1 cut(s)	1599
PciI	ACATGT	1 cut(s)	274
PciSI	GCTCTTC	1 cut(s)	104
PctI	GAATGC	2 cut(s)	1873, 2316
PdiI	GCCGGC	2 cut(s)	129, 190
PdmI	GAANNNNTTC	3 cut(s)	357, 1305, 1840
PflMI	CCANNNNNTGG	1 cut(s)	509
PfoI	TCCNGGA	1 cut(s)	722
PkrI	GCNGC	8 cut(s)	484, 519, 1150, 1239, 1803, 1806, 2545, 3085
Ple19I	CGATCG	1 cut(s)	71
PleI	GAGTC	4 cut(s)	1032, 1982, 2910, 3226
PluTI	GGCGCC	1 cut(s)	256
PpsI	GAGTC	4 cut(s)	1032, 1982, 2910, 3226
PpuMI	RGGWCCY	2 cut(s)	1703, 2237
PscI	ACATGT	1 cut(s)	274
PsiI	TTATAA	1 cut(s)	2489
Psp5II	RGGWCCY	2 cut(s)	1703, 2237
Psp6I	CCWGG	4 cut(s)	796, 868, 1576, 1598
PspFI	CCCAGC	1 cut(s)	152
PspGI	CCWGG	4 cut(s)	796, 868, 1576, 1598
PspN4I	GGNNCC	6 cut(s)	37, 43, 49, 254, 1454, 1704
PspPI	GGNCC	8 cut(s)	656, 1452, 1703, 2063, 2237, 2633, 2699, 2956
PspPPI	RGGWCCY	2 cut(s)	1703, 2237
PstNI	CAGNNNCTG	1 cut(s)	875
PsuI	RGATCY	4 cut(s)	135, 820, 2110, 3199
PvuI	CGATCG	1 cut(s)	71
RsaI	GTAC	7 cut(s)	864, 1232, 1410, 1686, 2758, 3057, 3302
RsaNI	GTAC	7 cut(s)	863, 1231, 1409, 1685, 2757, 3056, 3301
RseI	CAYNNNNRTG	8 cut(s)	387, 402, 441, 444, 1254, 1398, 2254, 2934
SapI	GCTCTTC	1 cut(s)	104
SatI	GCNGC	8 cut(s)	483, 518, 1149, 1238, 1802, 1805, 2544, 3084
Sau96I	GGNCC	8 cut(s)	656, 1452, 1703, 2063, 2237, 2633, 2699, 2956
ScaI	AGTACT	1 cut(s)	3302
SchI	GAGTC	4 cut(s)	1032, 1982, 2911, 3227
ScrFI	CCNGG	8 cut(s)	28, 52, 724, 798, 870, 1578, 1600, 2511
SduI	GDGCHC	3 cut(s)	399, 2358, 3129
SfaNI	GCATC	8 cut(s)	278, 445, 1021, 1171, 1788, 2524, 2555, 3241
SfoI	GGCGCC	1 cut(s)	254
Sfr274I	CTCGAG	1 cut(s)	600
SgrAI	CRCCGGYG	1 cut(s)	188
SinI	GGWCC	7 cut(s)	1452, 1703, 2063, 2237, 2633, 2699, 2956
SlaI	CTCGAG	1 cut(s)	600
SmiMI	CAYNNNNRTG	8 cut(s)	387, 402, 441, 444, 1254, 1398, 2254, 2934
SmlI	CTYRAG	1 cut(s)	600
SmoI	CTYRAG	1 cut(s)	600
SphI	GCATGC	1 cut(s)	1672
SsiI	CCGC	9 cut(s)	33, 109, 1034, 1148, 1237, 1741, 1802, 2208, 3314
SspDI	GGCGCC	1 cut(s)	252
StyD4I	CCNGG	8 cut(s)	26, 50, 722, 796, 868, 1576, 1598, 2509
StyI	CCWWGG	2 cut(s)	1673, 2876
TaaI	ACNGT	6 cut(s)	427, 1073, 1142, 1691, 2756, 2977
TaiI	ACGT	2 cut(s)	1417, 1686
TaqI	TCGA	9 cut(s)	23, 141, 225, 601, 1176, 1913, 2343, 2578, 2748
TatI	WGTACW	4 cut(s)	862, 1230, 2756, 3300
TauI	GCSGC	3 cut(s)	1151, 1240, 1804
TscAI	CASTG	3 cut(s)	1694, 2288, 2904
TseFI	GTSAC	2 cut(s)	1553, 3309
TseI	GCWGC	5 cut(s)	482, 517, 1804, 2543, 3083
Tsp45I	GTSAC	2 cut(s)	1553, 3309
TspGWI	ACGGA	4 cut(s)	160, 401, 2431, 2432
TspRI	CASTG	3 cut(s)	1694, 2288, 2904
Van91I	CCANNNNNTGG	1 cut(s)	509
VneI	GTGCAC	1 cut(s)	395
VpaK11BI	GGWCC	7 cut(s)	1452, 1703, 2063, 2237, 2633, 2699, 2956
XagI	CCTNNNNNAGG	2 cut(s)	1050, 1095
XapI	RAATTY	3 cut(s)	324, 1840, 2891
XbaI	TCTAGA	1 cut(s)	3077
XceI	RCATGY	4 cut(s)	278, 944, 1237, 1672
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1433
XhoI	CTCGAG	1 cut(s)	600
XmiI	GTMKAC	2 cut(s)	1137, 1443
XmnI	GAANNNNTTC	3 cut(s)	357, 1305, 1840
ZrmI	AGTACT	1 cut(s)	3302
Zsp2I	ATGCAT	2 cut(s)	946, 2568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.