Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016309.1

Orthogroup ID

OG0001577

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1581

Gene Structure 1581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016309.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 454 bp

gcattggcaatatcgaaccatttgcagagggcataattcaattctacacaatttatatgaacttcttggtccaaagacacacgactacatttctttctatggccttagagcctatggtaaactctttgatggcggtcctgtggcctccagtcaggtgtatgtgcatagtaaaatcatgattgtcgatgattgtacaactataattggatcagctaacatcaatgataggagtttgcttggttcaagagattctgagattggtcttcttattgaagacaaagagttggttaattcatatatgggaggaaaaccatggaaggctggaaaattttcattgagtcttcgcatgtcgctatggtctgaacatcttggtattcgctctggagagatggaccaaataatcgatccaactgttgattcaacttacaaggatatatggatggagacagctaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0006629 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0016298 GO:0016787 GO:0016788 GO:0022622 GO:0032501 GO:0032502 GO:0042578 GO:0044238 GO:0048364 GO:0048731 GO:0048856 GO:0071704 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

PLDc PLDc_2

Protein Analysis

151

Amino Acids

17.09

Weight (kDa)

6.31

Isoelectric Point (pI)

43.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16785 AT3G16785 AT3G16785 AT3G16785 AT3G16785 AT3G16785
fragaria_vesca	FvH4_4g18810 FvH4_6g06940 FvH4_6g06940 FvH4_6g06940
malus_domestica	MD04G1197500.v1.1 MD12G1210300.v1.1 MD13G1162600.v1.1 MD16G1162400.v1.1
prunus_persica	Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.6G317900_v2.0.a1 Prupe.6G317900_v2.0.a1 Prupe.6G317900_v2.0.a1
pyrus_communis	pycom04g17480 pycom13g13890 pycom16g13770
rosa_chinensis	RchiOBHm_Chr3g0456481 RchiOBHm_Chr4g0423621
rosa_laevigata	RLG00000007541 RLG00000025302
rosa_multiflora	Rmu_co8413375.1_g000001 Rmu_sc0000464.1_g000017 Rmu_sc0002607.1_g000011 Rmu_sc0008373.1_g000012 Rmu_sc0016309.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365830 Rroxscaffold_6G00422720
rosa_rugosa	Rorug03G0013400 Rorug03G0013400 Rorug03G0013400 Rorug04G0189100
rosa_samantha	Rh3AG073700 Rh3BG075600 Rh3DG076900 Rh4AG248700 Rh4BG254000 Rh4DG249000
rosa_wichuraiana	Rw3G006320 Rw4G021300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	133
AclWI	GGATC	2 cut(s)	215, 399
AcsI	RAATTY	1 cut(s)	327
AfaI	GTAC	1 cut(s)	194
AgsI	TTSAA	4 cut(s)	40, 244, 273, 421
AjuI	GAANNNNNNNTTGG	2 cut(s)	401, 433
AluBI	AGCT	2 cut(s)	213, 450
AluI	AGCT	2 cut(s)	213, 450
Alw26I	GTCTC	1 cut(s)	438
AlwI	GGATC	2 cut(s)	215, 399
AoxI	GGCC	2 cut(s)	101, 142
ApoI	RAATTY	1 cut(s)	327
Asp700I	GAANNNNTTC	1 cut(s)	329
AspS9I	GGNCC	3 cut(s)	69, 135, 392
AvaII	GGWCC	3 cut(s)	69, 135, 392
BbsI	GAAGAC	3 cut(s)	255, 280, 333
BccI	CCATC	3 cut(s)	123, 383, 434
BcgI	CGANNNNNNTGC	2 cut(s)	4, 38
BcoDI	GTCTC	1 cut(s)	438
Bme18I	GGWCC	3 cut(s)	69, 135, 392
BmgT120I	GGNCC	3 cut(s)	69, 135, 392
BpiI	GAAGAC	3 cut(s)	255, 280, 333
BpmI	CTGGAG	2 cut(s)	131, 403
Bsa29I	ATCGAT	1 cut(s)	403
BsaJI	CCNNGG	1 cut(s)	312
Bse1I	ACTGG	1 cut(s)	148
BseCI	ATCGAT	1 cut(s)	403
BseDI	CCNNGG	1 cut(s)	312
BseGI	GGATG	1 cut(s)	445
BseMII	CTCAG	1 cut(s)	244
BseNI	ACTGG	1 cut(s)	148
BshFI	GGCC	2 cut(s)	103, 144
BshVI	ATCGAT	1 cut(s)	403
BsmAI	GTCTC	1 cut(s)	438
BsnI	GGCC	2 cut(s)	103, 144
Bsp1407I	TGTACA	1 cut(s)	192
Bsp143I	GATC	2 cut(s)	207, 404
Bsp19I	CCATGG	1 cut(s)	312
BspACI	CCGC	1 cut(s)	133
BspANI	GGCC	2 cut(s)	103, 144
BspCNI	CTCAG	1 cut(s)	245
BspDI	ATCGAT	1 cut(s)	403
BspHI	TCATGA	1 cut(s)	175
BspPI	GGATC	2 cut(s)	215, 399
BsrGI	TGTACA	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	2 cut(s)	207, 404
BssT1I	CCWWGG	1 cut(s)	312
Bst4CI	ACNGT	1 cut(s)	413
BstAUI	TGTACA	1 cut(s)	192
BstDEI	CTNAG	3 cut(s)	105, 253, 451
BstDSI	CCRYGG	1 cut(s)	312
BstF5I	GGATG	1 cut(s)	445
BstKTI	GATC	2 cut(s)	210, 407
BstMAI	GTCTC	1 cut(s)	438
BstMBI	GATC	2 cut(s)	207, 404
BstNSI	RCATGY	1 cut(s)	350
BstV2I	GAAGAC	3 cut(s)	255, 280, 333
Bsu15I	ATCGAT	1 cut(s)	403
BsuRI	GGCC	2 cut(s)	103, 144
BsuTUI	ATCGAT	1 cut(s)	403
BtgI	CCRYGG	1 cut(s)	312
BtsCI	GGATG	1 cut(s)	445
CciI	TCATGA	1 cut(s)	175
Cfr13I	GGNCC	3 cut(s)	69, 135, 392
ClaI	ATCGAT	1 cut(s)	403
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	3 cut(s)	176, 313, 347
CviJI	RGCY	6 cut(s)	103, 111, 144, 213, 321, 450
CviKI_1	RGCY	6 cut(s)	103, 111, 144, 213, 321, 450
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	3 cut(s)	105, 253, 451
DpnI	GATC	2 cut(s)	209, 406
DpnII	GATC	2 cut(s)	207, 404
Eco130I	CCWWGG	1 cut(s)	312
Eco47I	GGWCC	3 cut(s)	69, 135, 392
EcoT14I	CCWWGG	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	3 cut(s)	179, 316, 350
FatI	CATG	3 cut(s)	175, 312, 346
GsuI	CTGGAG	2 cut(s)	131, 403
HaeIII	GGCC	2 cut(s)	103, 144
Hin1II	CATG	3 cut(s)	179, 316, 350
HinfI	GANTC	3 cut(s)	249, 338, 417
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188I	TCNGA	2 cut(s)	254, 362
Hpy188III	TCNNGA	3 cut(s)	176, 244, 382
Hpy8I	GTNNAC	1 cut(s)	120
HpyAV	CCTTC	1 cut(s)	311
HpyCH4III	ACNGT	1 cut(s)	413
HpyCH4V	TGCA	2 cut(s)	25, 164
HpyF3I	CTNAG	3 cut(s)	105, 253, 451
Hsp92II	CATG	3 cut(s)	179, 316, 350
Kzo9I	GATC	2 cut(s)	207, 404
LpnPI	CCDG	5 cut(s)	138, 151, 161, 307, 367
MalI	GATC	2 cut(s)	209, 406
MboI	GATC	2 cut(s)	207, 404
MboII	GAAGA	3 cut(s)	255, 285, 333
MluCI	AATT	6 cut(s)	35, 40, 50, 202, 290, 327
MlyI	GAGTC	1 cut(s)	347
MmeI	TCCRAC	1 cut(s)	432
MnlI	CCTC	3 cut(s)	21, 155, 297
MroXI	GAANNNNTTC	1 cut(s)	329
MseI	TTAA	1 cut(s)	289
NcoI	CCATGG	1 cut(s)	312
NdeII	GATC	2 cut(s)	207, 404
NlaIII	CATG	3 cut(s)	179, 316, 350
NspI	RCATGY	1 cut(s)	350
PagI	TCATGA	1 cut(s)	175
PdmI	GAANNNNTTC	1 cut(s)	329
PfeI	GAWTC	2 cut(s)	249, 417
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
PspPI	GGNCC	3 cut(s)	69, 135, 392
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
SaqAI	TTAA	1 cut(s)	289
Sau3AI	GATC	2 cut(s)	207, 404
Sau96I	GGNCC	3 cut(s)	69, 135, 392
SchI	GAGTC	1 cut(s)	347
SetI	ASST	3 cut(s)	157, 215, 452
SinI	GGWCC	3 cut(s)	69, 135, 392
Sse9I	AATT	6 cut(s)	35, 40, 50, 202, 290, 327
SsiI	CCGC	1 cut(s)	133
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	1 cut(s)	413
TaqI	TCGA	3 cut(s)	14, 184, 403
TasI	AATT	6 cut(s)	35, 40, 50, 202, 290, 327
TatI	WGTACW	1 cut(s)	192
TfiI	GAWTC	2 cut(s)	249, 417
Tru1I	TTAA	1 cut(s)	289
Tru9I	TTAA	1 cut(s)	289
TspDTI	ATGAA	3 cut(s)	73, 283, 322
VpaK11BI	GGWCC	3 cut(s)	69, 135, 392
XapI	RAATTY	1 cut(s)	327
XceI	RCATGY	1 cut(s)	350
XmnI	GAANNNNTTC	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.