Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008373.1

Orthogroup ID

OG0001577

Physical Location & Seq

Genomic Coordinates Reverse (-)

43575 .. 50721

Gene Structure 7147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008373.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2733 bp

atggaatcggagcagttgatatcatcgacggggagcggttcccggtatatgcaaatgcgatcggagcagttaacgtcgccgtcgtcgctgttatcgttccggcactcgtccttcgagccgccgcggattttcgacgagttgcccagcgccaccatcgtctccgtctcccgccccgacgccggcgatatcagccccatgcttctctcctacactatcgagttccaatacaagcagtttaagtggcgcctattgaagaaagcatcacaagtattctacttgcattttgcgttgaagaaacgggcatttattgaggaaattcacgaaaagcaggaacaggtggcttgtggaagccggagcattaaattaagagttaggagtagtagtaaagttaaagattgggtagcgtcaatcaatgatgcgggactcaggcctcctgaaggttggtgtcatcctcaccgctttggctcctttgcgcctccaagaggcttgactgaagatggtagtcaggctcaatggtttgtagatggtcgggcggcatttgaagctattgcttctgcaattgaggctgcaaaatcagagatatttatttgtggttggtggctgtgtccagaattgtacatgcggcgtccgtttcttactcatgcttcttctaaacttgattctctgctggaagcaaaagctaaggaaggggttcagatttacattcttctctataaagaagtagctcttgctctgaaaatcaacagcgtatatagcaagagaaaacttcttgggattcatgagaatgtgagggtattacgttatcctgaccacttctctagtggtgtttacttatggtcccaccatgaaaaacttgtcattgttgatcatcagatttgctttgttggaggacttgatttatgctttggtcgttatgatactgctgaacataaagtgggtgactgccctcctaacatttggcctggaaaggactattacaaccccagggaatctgaaccaaactcgtgggaggatacaatgagagatgagttggaccgtgaaaaatatcctcgcatgccttggcatgatgtccactgtgctatttggggacctccttgccgtgatgtagctaggcatttcgttcagcggtggaactatgcaaagagaaataaagctccaaatgagcaggcaattccactacttatgccgcaacagcacatggtaattcctcattacatggggaaaagctcagatgtggtgattgaaaatgagaatgccagcaatagtaaagacattaaaaggcaggattccttttcgtcgaaatcatcctatcaggatatccccttgcttatacctcaagaggctgatgggttgaatgaaaacccaagaccatatggggtggactctgctcatttcctcgatcagccaagcagagttggtaacaatcttgctttcccttttcggaagacaaaaattgaaccagtaggtccagatacgccaatgaggggatttgtagatgactttgaatctatggatcgacatgggaaattggcttcagacgtggtggcacgtcctgcaatcacaaattcagatccagagtggtgggaaatacaagaacggggaaatgagggtggtttcacagatgaatcaggacaagttggtccttctagttcatgccgttgtcaggttatcagaagtgtcagtcagtggtcagcaggaacaagccaagttgaagatagcattcacagtgcttattgttctcttatcgataaagctgagcactttatttacattgagaatcaatttttcatctcaggtctttcaggagatgaaataatacggaatcgtgtgttagaagcattattccgtcgtattatgcgagcatacaatgataagaagtgttttagaattataattgtcataccactcgtacctggttttcaaggtggtttggatgatgctggcgcggcatctgtgagagctgttatgcattggcaatatcgaaccatttgcagagggcataattcaattctacacaatttatatgaacttcttggtccaaagacacacgactacatttctttctatggccttagagcctatggtaaactctttgatggcggtcctgtggcctccagtcaggtgtatgtgcatagtaaaatcatgattgtcgatgattgtacaactataattggatcagctaacatcaatgataggagtttgcttggttcaagagattctgagattggtcttcttattgaagacaaagagttggttaattcatatatgggaggaaaaccatggaaggctggaaaattttcattgagtcttcgcatgtcgctatggtctgaacatcttggtattcgctctggagagatggaccaaataatcgatccaactgttgattcaacttacaaggatatatggatggagacagctaaggcaaataccaccatctaccaagatgtcttttcctgtgtaccaaatgattttatacattctagagctgcatttagacaaaacatagccttttggaaggagaaggtagggcacacaaccattgatttaggaattgctcctggtacgctagagtcgtatcaaaatggagatgtcaagaaagcagatcccatggagaggttagaatctataaaggggcatcttgtttctttccctttggatttcatgttgaaagaagatttgagacccgtgttcaatgagagtgagtattatgcgtcgcctcaagtatttcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0006629 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0016298 GO:0016787 GO:0016788 GO:0022622 GO:0032501 GO:0032502 GO:0042578 GO:0044238 GO:0048364 GO:0048731 GO:0048856 GO:0071704 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

PLDc PLDc_2

Protein Analysis

910

Amino Acids

103.43

Weight (kDa)

6.35

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16785 AT3G16785 AT3G16785 AT3G16785 AT3G16785 AT3G16785
fragaria_vesca	FvH4_4g18810 FvH4_6g06940 FvH4_6g06940 FvH4_6g06940
malus_domestica	MD04G1197500.v1.1 MD12G1210300.v1.1 MD13G1162600.v1.1 MD16G1162400.v1.1
prunus_persica	Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.6G317900_v2.0.a1 Prupe.6G317900_v2.0.a1 Prupe.6G317900_v2.0.a1
pyrus_communis	pycom04g17480 pycom13g13890 pycom16g13770
rosa_chinensis	RchiOBHm_Chr3g0456481 RchiOBHm_Chr4g0423621
rosa_laevigata	RLG00000007541 RLG00000025302
rosa_multiflora	Rmu_co8413375.1_g000001 Rmu_sc0000464.1_g000017 Rmu_sc0002607.1_g000011 Rmu_sc0008373.1_g000012 Rmu_sc0016309.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365830 Rroxscaffold_6G00422720
rosa_rugosa	Rorug03G0013400 Rorug03G0013400 Rorug03G0013400 Rorug04G0189100
rosa_samantha	Rh3AG073700 Rh3BG075600 Rh3DG076900 Rh4AG248700 Rh4BG254000 Rh4DG249000
rosa_wichuraiana	Rw3G006320 Rw4G021300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1892
AasI	GACNNNNNNGTC	1 cut(s)	1638
AccB1I	GGYRCC	1 cut(s)	243
AccBSI	CCGCTC	1 cut(s)	36
AccII	CGCG	2 cut(s)	124, 1946
AclWI	GGATC	5 cut(s)	1521, 1565, 2182, 2366, 2597
AcsI	RAATTY	3 cut(s)	315, 1564, 2294
AcuI	CTGAAG	3 cut(s)	456, 513, 1518
AcyI	GRCGYC	3 cut(s)	177, 244, 625
AfaI	GTAC	5 cut(s)	617, 1911, 2161, 2460, 2563
AfiI	CCNNNNNNNGG	6 cut(s)	179, 437, 482, 1484, 1663, 2613
AjiI	CACGTC	2 cut(s)	1540, 1550
AjnI	CCWGG	4 cut(s)	961, 983, 1912, 2557
AjuI	GAANNNNNNNTTGG	2 cut(s)	2368, 2400
Alw21I	GWGCWC	1 cut(s)	1761
Alw26I	GTCTC	4 cut(s)	163, 169, 2405, 2674
AlwI	GGATC	5 cut(s)	1521, 1565, 2182, 2366, 2597
AoxI	GGCC	4 cut(s)	428, 959, 2068, 2109
ApeKI	GCWGC	2 cut(s)	566, 2486
ApoI	RAATTY	3 cut(s)	315, 1564, 2294
Asp700I	GAANNNNTTC	2 cut(s)	690, 2296
AspLEI	GCGC	4 cut(s)	149, 246, 475, 1946
AspS9I	GGNCC	8 cut(s)	837, 1033, 1088, 1466, 1640, 2036, 2102, 2359
AsuC2I	CCSGG	1 cut(s)	43
AsuHPI	GGTGA	3 cut(s)	446, 950, 1249
AvaII	GGWCC	8 cut(s)	837, 1033, 1088, 1466, 1640, 2036, 2102, 2359
BaeGI	GKGCMC	1 cut(s)	2532
BanI	GGYRCC	1 cut(s)	243
BauI	CACGAG	1 cut(s)	1003
BbsI	GAAGAC	4 cut(s)	1451, 2222, 2247, 2300
Bbv12I	GWGCWC	1 cut(s)	1761
BbvI	GCAGC	2 cut(s)	553, 2473
BccI	CCATC	8 cut(s)	161, 491, 518, 1340, 2090, 2350, 2401, 2441
BceAI	ACGGC	3 cut(s)	64, 1083, 1641
BcgI	CGANNNNNNTGC	2 cut(s)	1971, 2005
BciT130I	CCWGG	4 cut(s)	963, 985, 1914, 2559
BciVI	GTATCC	1 cut(s)	1006
BclI	TGATCA	1 cut(s)	865
BcnI	CCSGG	1 cut(s)	43
BcoDI	GTCTC	4 cut(s)	163, 169, 2405, 2674
BfaI	CTAG	5 cut(s)	819, 1110, 1647, 2481, 2567
BfoI	RGCGCY	2 cut(s)	150, 247
BfuI	GTATCC	1 cut(s)	1006
BisI	GCNGC	8 cut(s)	119, 122, 534, 567, 623, 1187, 1947, 2487
BlpI	GCTNAGC	1 cut(s)	1755
BlsI	GCNGC	8 cut(s)	120, 123, 535, 568, 624, 1188, 1948, 2488
Bme1390I	CCNGG	5 cut(s)	43, 963, 985, 1914, 2559
Bme18I	GGWCC	8 cut(s)	837, 1033, 1088, 1466, 1640, 2036, 2102, 2359
BmgBI	CACGTC	2 cut(s)	1540, 1550
BmgT120I	GGNCC	8 cut(s)	837, 1033, 1088, 1466, 1640, 2036, 2102, 2359
BmiI	GGNNCC	5 cut(s)	40, 245, 466, 839, 1089
BmrFI	CCNGG	5 cut(s)	43, 963, 985, 1914, 2559
BmsI	GCATC	5 cut(s)	269, 406, 1927, 1958, 2644
BpiI	GAAGAC	4 cut(s)	1451, 2222, 2247, 2300
BpmI	CTGGAG	2 cut(s)	2098, 2370
Bpu10I	CCTNAGC	2 cut(s)	681, 2418
Bpu1102I	GCTNAGC	1 cut(s)	1755
BpuEI	CTTGAG	2 cut(s)	1320, 2703
BpuMI	CCSGG	1 cut(s)	43
Bsa29I	ATCGAT	2 cut(s)	1746, 2370
BsaHI	GRCGYC	3 cut(s)	177, 244, 625
BsaI	GGTCTC	1 cut(s)	2674
BsaJI	CCNNGG	6 cut(s)	122, 983, 984, 1058, 2279, 2607
BsaXI	ACNNNNNCTCC	2 cut(s)	367, 397
Bsc4I	CCNNNNNNNGG	6 cut(s)	179, 437, 482, 1484, 1663, 2613
Bse118I	RCCGGY	1 cut(s)	179
Bse1I	ACTGG	2 cut(s)	1460, 2115
BseBI	CCWGG	4 cut(s)	963, 985, 1914, 2559
BseCI	ATCGAT	2 cut(s)	1746, 2370
BseDI	CCNNGG	6 cut(s)	122, 983, 984, 1058, 2279, 2607
BseGI	GGATG	4 cut(s)	448, 1304, 1939, 2412
BseLI	CCNNNNNNNGG	6 cut(s)	179, 437, 482, 1484, 1663, 2613
BseMII	CTCAG	5 cut(s)	439, 1242, 1746, 1806, 2211
BseNI	ACTGG	2 cut(s)	1460, 2115
BseSI	GKGCMC	1 cut(s)	2532
BseXI	GCAGC	2 cut(s)	553, 2473
BseYI	CCCAGC	1 cut(s)	143
Bsh1236I	CGCG	2 cut(s)	124, 1946
Bsh1285I	CGRYCG	1 cut(s)	62
BshFI	GGCC	4 cut(s)	430, 961, 2070, 2111
BshNI	GGYRCC	1 cut(s)	243
BshVI	ATCGAT	2 cut(s)	1746, 2370
BsiEI	CGRYCG	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	1761
BsiSI	CCGG	4 cut(s)	43, 100, 180, 352
BslFI	GGGAC	3 cut(s)	435, 823, 1101
BslI	CCNNNNNNNGG	6 cut(s)	179, 437, 482, 1484, 1663, 2613
BsmAI	GTCTC	4 cut(s)	163, 169, 2405, 2674
BsmBI	CGTCTC	2 cut(s)	163, 169
BsmFI	GGGAC	3 cut(s)	435, 823, 1101
BsmI	GAATGC	2 cut(s)	1258, 1719
BsnI	GGCC	4 cut(s)	430, 961, 2070, 2111
Bso31I	GGTCTC	1 cut(s)	2674
Bsp1286I	GDGCHC	2 cut(s)	1761, 2532
Bsp1407I	TGTACA	2 cut(s)	615, 2159
Bsp143I	GATC	8 cut(s)	59, 865, 1399, 1513, 1570, 2174, 2371, 2602
Bsp1720I	GCTNAGC	1 cut(s)	1755
Bsp19I	CCATGG	2 cut(s)	2279, 2607
BspANI	GGCC	4 cut(s)	430, 961, 2070, 2111
BspCNI	CTCAG	5 cut(s)	438, 1241, 1747, 1805, 2212
BspDI	ATCGAT	2 cut(s)	1746, 2370
BspFNI	CGCG	2 cut(s)	124, 1946
BspHI	TCATGA	2 cut(s)	778, 2142
BspLI	GGNNCC	5 cut(s)	40, 245, 466, 839, 1089
BspPI	GGATC	5 cut(s)	1521, 1565, 2182, 2366, 2597
BspT107I	GGYRCC	1 cut(s)	243
BspTNI	GGTCTC	1 cut(s)	2674
BsrBI	CCGCTC	1 cut(s)	36
BsrFI	RCCGGY	1 cut(s)	179
BsrGI	TGTACA	2 cut(s)	615, 2159
BsrI	ACTGG	2 cut(s)	1460, 2115
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	6 cut(s)	122, 983, 984, 1058, 2279, 2607
BssMI	GATC	8 cut(s)	59, 865, 1399, 1513, 1570, 2174, 2371, 2602
BssNI	GRCGYC	3 cut(s)	177, 244, 625
BssSI	CACGAG	1 cut(s)	1003
BssT1I	CCWWGG	3 cut(s)	1058, 2279, 2607
Bst2BI	CACGAG	1 cut(s)	1003
Bst2UI	CCWGG	4 cut(s)	963, 985, 1914, 2559
Bst4CI	ACNGT	4 cut(s)	1037, 1076, 1727, 2380
BstACI	GRCGYC	3 cut(s)	177, 244, 625
BstAPI	GCANNNNNTGC	1 cut(s)	1553
BstAUI	TGTACA	2 cut(s)	615, 2159
BstC8I	GCNNGC	6 cut(s)	181, 1055, 1167, 1258, 1860, 1942
BstDEI	CTNAG	8 cut(s)	425, 681, 1228, 1755, 1792, 2072, 2220, 2418
BstDSI	CCRYGG	3 cut(s)	122, 2279, 2607
BstENI	CCTNNNNNAGG	2 cut(s)	435, 480
BstF5I	GGATG	4 cut(s)	448, 1304, 1939, 2412
BstFNI	CGCG	2 cut(s)	124, 1946
BstH2I	RGCGCY	2 cut(s)	150, 247
BstHHI	GCGC	4 cut(s)	149, 246, 475, 1946
BstKTI	GATC	8 cut(s)	62, 868, 1402, 1516, 1573, 2177, 2374, 2605
BstMAI	GTCTC	4 cut(s)	163, 169, 2405, 2674
BstMBI	GATC	8 cut(s)	59, 865, 1399, 1513, 1570, 2174, 2371, 2602
BstMCI	CGRYCG	1 cut(s)	62
BstMWI	GCNNNNNNNGC	9 cut(s)	64, 85, 189, 542, 563, 753, 1192, 1553, 1946
BstNI	CCWGG	4 cut(s)	963, 985, 1914, 2559
BstNSI	RCATGY	3 cut(s)	622, 1057, 2317
BstSCI	CCNGG	5 cut(s)	41, 961, 983, 1912, 2557
BstSLI	GKGCMC	1 cut(s)	2532
BstUI	CGCG	2 cut(s)	124, 1946
BstV1I	GCAGC	2 cut(s)	553, 2473
BstV2I	GAAGAC	4 cut(s)	1451, 2222, 2247, 2300
BstX2I	RGATCY	2 cut(s)	1570, 2602
BstXI	CCANNNNNNTGG	2 cut(s)	1005, 1581
BstYI	RGATCY	2 cut(s)	1570, 2602
Bsu15I	ATCGAT	2 cut(s)	1746, 2370
BsuI	GTATCC	1 cut(s)	1006
BsuRI	GGCC	4 cut(s)	430, 961, 2070, 2111
BsuTUI	ATCGAT	2 cut(s)	1746, 2370
BtgI	CCRYGG	3 cut(s)	122, 2279, 2607
BtrI	CACGTC	2 cut(s)	1540, 1550
BtsCI	GGATG	4 cut(s)	448, 1304, 1939, 2412
BtsIMutI	CAGTG	3 cut(s)	1072, 1691, 1732
Cac8I	GCNNGC	6 cut(s)	181, 1055, 1167, 1258, 1860, 1942
CciI	TCATGA	2 cut(s)	778, 2142
CfoI	GCGC	4 cut(s)	149, 246, 475, 1946
Cfr10I	RCCGGY	1 cut(s)	179
Cfr13I	GGNCC	8 cut(s)	837, 1033, 1088, 1466, 1640, 2036, 2102, 2359
Cfr42I	CCGCGG	1 cut(s)	125
ClaI	ATCGAT	2 cut(s)	1746, 2370
CseI	GACGC	4 cut(s)	185, 393, 614, 2700
CsiI	ACCWGGT	1 cut(s)	1912
Csp6I	GTAC	5 cut(s)	616, 1910, 2160, 2459, 2562
CviQI	GTAC	5 cut(s)	616, 1910, 2160, 2459, 2562
DdeI	CTNAG	8 cut(s)	425, 681, 1228, 1755, 1792, 2072, 2220, 2418
DinI	GGCGCC	1 cut(s)	245
DpnI	GATC	8 cut(s)	61, 867, 1401, 1515, 1572, 2176, 2373, 2604
DpnII	GATC	8 cut(s)	59, 865, 1399, 1513, 1570, 2174, 2371, 2602
DrdI	GACNNNNNNGTC	1 cut(s)	1638
DseDI	GACNNNNNNGTC	1 cut(s)	1638
Eco130I	CCWWGG	3 cut(s)	1058, 2279, 2607
Eco147I	AGGCCT	1 cut(s)	430
Eco31I	GGTCTC	1 cut(s)	2674
Eco32I	GATATC	3 cut(s)	21, 187, 1318
Eco47I	GGWCC	8 cut(s)	837, 1033, 1088, 1466, 1640, 2036, 2102, 2359
Eco57I	CTGAAG	3 cut(s)	456, 513, 1518
EcoNI	CCTNNNNNAGG	2 cut(s)	435, 480
EcoO109I	RGGNCCY	1 cut(s)	1088
EcoRII	CCWGG	4 cut(s)	961, 983, 1912, 2557
EcoRV	GATATC	3 cut(s)	21, 187, 1318
EcoT14I	CCWWGG	3 cut(s)	1058, 2279, 2607
EcoT22I	ATGCAT	1 cut(s)	1971
EgeI	GGCGCC	1 cut(s)	245
EheI	GGCGCC	1 cut(s)	245
ErhI	CCWWGG	3 cut(s)	1058, 2279, 2607
Esp3I	CGTCTC	2 cut(s)	163, 169
FalI	AAGNNNNNCTT	2 cut(s)	711, 743
FaqI	GGGAC	3 cut(s)	435, 823, 1101
FauI	CCCGC	2 cut(s)	176, 412
FauNDI	CATATG	1 cut(s)	1372
FbaI	TGATCA	1 cut(s)	865
Fnu4HI	GCNGC	8 cut(s)	119, 122, 534, 567, 623, 1187, 1947, 2487
FokI	GGATG	4 cut(s)	435, 1291, 1946, 2419
Fsp4HI	GCNGC	8 cut(s)	119, 122, 534, 567, 623, 1187, 1947, 2487
FspBI	CTAG	5 cut(s)	819, 1110, 1647, 2481, 2567
GlaI	GCGC	4 cut(s)	148, 245, 474, 1945
GluI	GCNGC	8 cut(s)	119, 122, 534, 567, 623, 1187, 1947, 2487
GsaI	CCCAGC	1 cut(s)	147
GsuI	CTGGAG	2 cut(s)	2098, 2370
HaeII	RGCGCY	2 cut(s)	150, 247
HaeIII	GGCC	4 cut(s)	430, 961, 2070, 2111
HapII	CCGG	4 cut(s)	43, 100, 180, 352
HgaI	GACGC	4 cut(s)	185, 393, 614, 2700
HhaI	GCGC	4 cut(s)	149, 246, 475, 1946
Hin1I	GRCGYC	3 cut(s)	177, 244, 625
Hin6I	GCGC	4 cut(s)	147, 244, 473, 1944
HinP1I	GCGC	4 cut(s)	147, 244, 473, 1944
HincII	GTYRAC	1 cut(s)	72
HindII	GTYRAC	1 cut(s)	72
HpaI	GTTAAC	1 cut(s)	72
HpaII	CCGG	4 cut(s)	43, 100, 180, 352
HphI	GGTGA	3 cut(s)	446, 950, 1249
Hpy166II	GTNNAC	6 cut(s)	72, 829, 1072, 1381, 2087, 2459
Hpy8I	GTNNAC	6 cut(s)	72, 829, 1072, 1381, 2087, 2459
Hpy99I	CGWCG	9 cut(s)	31, 79, 85, 88, 137, 179, 1300, 1851, 2716
HpyAV	CCTTC	7 cut(s)	121, 431, 680, 1653, 2278, 2509, 2515
HpyCH4III	ACNGT	4 cut(s)	1037, 1076, 1727, 2380
HpyCH4IV	ACGT	4 cut(s)	74, 799, 1539, 1549
HpyF10VI	GCNNNNNNNGC	9 cut(s)	64, 85, 189, 542, 563, 753, 1192, 1553, 1946
HpyF3I	CTNAG	8 cut(s)	425, 681, 1228, 1755, 1792, 2072, 2220, 2418
HpySE526I	ACGT	4 cut(s)	74, 799, 1539, 1549
Hsp92I	GRCGYC	3 cut(s)	177, 244, 625
HspAI	GCGC	4 cut(s)	147, 244, 473, 1944
KasI	GGCGCC	1 cut(s)	243
KroI	GCCGGC	1 cut(s)	179
KroNI	GCCGGC	1 cut(s)	181
Ksp22I	TGATCA	1 cut(s)	865
KspAI	GTTAAC	1 cut(s)	72
KspI	CCGCGG	1 cut(s)	125
Kzo9I	GATC	8 cut(s)	59, 865, 1399, 1513, 1570, 2174, 2371, 2602
LmnI	GCTCC	7 cut(s)	10, 33, 64, 354, 470, 1159, 2560
Lsp1109I	GCAGC	2 cut(s)	553, 2473
LweI	GCATC	5 cut(s)	269, 406, 1927, 1958, 2644
MabI	ACCWGGT	1 cut(s)	1912
MaeI	CTAG	5 cut(s)	819, 1110, 1647, 2481, 2567
MaeII	ACGT	4 cut(s)	74, 799, 1539, 1549
MaeIII	GTNAC	2 cut(s)	938, 1418
MalI	GATC	8 cut(s)	61, 867, 1401, 1515, 1572, 2176, 2373, 2604
MbiI	CCGCTC	1 cut(s)	36
MboI	GATC	8 cut(s)	59, 865, 1399, 1513, 1570, 2174, 2371, 2602
MfeI	CAATTG	1 cut(s)	558
MflI	RGATCY	2 cut(s)	1570, 2602
MhlI	GDGCHC	2 cut(s)	1761, 2532
Mly113I	GGCGCC	1 cut(s)	244
MlyI	GAGTC	4 cut(s)	417, 1376, 2314, 2579
MmeI	TCCRAC	3 cut(s)	865, 1011, 2399
Mph1103I	ATGCAT	1 cut(s)	1971
MreI	CGCCGGCG	1 cut(s)	179
MroNI	GCCGGC	1 cut(s)	179
MroXI	GAANNNNTTC	2 cut(s)	690, 2296
MseI	TTAA	7 cut(s)	71, 237, 360, 365, 390, 1275, 2256
MslI	CAYNNNNRTG	1 cut(s)	783
MspA1I	CMGCKG	2 cut(s)	124, 1126
MspI	CCGG	4 cut(s)	43, 100, 180, 352
MspR9I	CCNGG	5 cut(s)	43, 963, 985, 1914, 2559
MunI	CAATTG	1 cut(s)	558
Mva1269I	GAATGC	2 cut(s)	1258, 1719
MvaI	CCWGG	4 cut(s)	963, 985, 1914, 2559
MvnI	CGCG	2 cut(s)	124, 1946
MwoI	GCNNNNNNNGC	9 cut(s)	64, 85, 189, 542, 563, 753, 1192, 1553, 1946
NaeI	GCCGGC	1 cut(s)	181
NarI	GGCGCC	1 cut(s)	244
NciI	CCSGG	1 cut(s)	43
NcoI	CCATGG	2 cut(s)	2279, 2607
NdeI	CATATG	1 cut(s)	1372
NdeII	GATC	8 cut(s)	59, 865, 1399, 1513, 1570, 2174, 2371, 2602
NgoMIV	GCCGGC	1 cut(s)	179
NlaIV	GGNNCC	5 cut(s)	40, 245, 466, 839, 1089
NmuCI	GTSAC	1 cut(s)	938
NsiI	ATGCAT	1 cut(s)	1971
NspI	RCATGY	3 cut(s)	622, 1057, 2317
PaeI	GCATGC	1 cut(s)	1057
PagI	TCATGA	2 cut(s)	778, 2142
PasI	CCCWGGG	1 cut(s)	984
PceI	AGGCCT	1 cut(s)	430
PcsI	WCGNNNNNNNCGW	4 cut(s)	80, 92, 1855, 2570
PctI	GAATGC	2 cut(s)	1258, 1719
PdiI	GCCGGC	1 cut(s)	181
PdmI	GAANNNNTTC	2 cut(s)	690, 2296
PkrI	GCNGC	8 cut(s)	120, 123, 535, 568, 624, 1188, 1948, 2488
Ple19I	CGATCG	1 cut(s)	62
PleI	GAGTC	4 cut(s)	417, 1376, 2313, 2578
PluTI	GGCGCC	1 cut(s)	247
PpsI	GAGTC	4 cut(s)	417, 1376, 2313, 2578
PpuMI	RGGWCCY	1 cut(s)	1088
PsiI	TTATAA	1 cut(s)	1892
Psp5II	RGGWCCY	1 cut(s)	1088
Psp6I	CCWGG	4 cut(s)	961, 983, 1912, 2557
PspFI	CCCAGC	1 cut(s)	143
PspGI	CCWGG	4 cut(s)	961, 983, 1912, 2557
PspN4I	GGNNCC	5 cut(s)	40, 245, 466, 839, 1089
PspPI	GGNCC	8 cut(s)	837, 1033, 1088, 1466, 1640, 2036, 2102, 2359
PspPPI	RGGWCCY	1 cut(s)	1088
PsuI	RGATCY	2 cut(s)	1570, 2602
PvuI	CGATCG	1 cut(s)	62
RsaI	GTAC	5 cut(s)	617, 1911, 2161, 2460, 2563
RsaNI	GTAC	5 cut(s)	616, 1910, 2160, 2459, 2562
RseI	CAYNNNNRTG	1 cut(s)	783
SacII	CCGCGG	1 cut(s)	125
SaqAI	TTAA	7 cut(s)	71, 237, 360, 365, 390, 1275, 2256
SatI	GCNGC	8 cut(s)	119, 122, 534, 567, 623, 1187, 1947, 2487
Sau3AI	GATC	8 cut(s)	59, 865, 1399, 1513, 1570, 2174, 2371, 2602
Sau96I	GGNCC	8 cut(s)	837, 1033, 1088, 1466, 1640, 2036, 2102, 2359
SchI	GAGTC	4 cut(s)	417, 1376, 2314, 2579
ScrFI	CCNGG	5 cut(s)	43, 963, 985, 1914, 2559
SduI	GDGCHC	2 cut(s)	1761, 2532
SexAI	ACCWGGT	1 cut(s)	1912
SfaNI	GCATC	5 cut(s)	269, 406, 1927, 1958, 2644
SfoI	GGCGCC	1 cut(s)	245
Sfr303I	CCGCGG	1 cut(s)	125
SgrAI	CRCCGGYG	1 cut(s)	179
SgrBI	CCGCGG	1 cut(s)	125
SinI	GGWCC	8 cut(s)	837, 1033, 1088, 1466, 1640, 2036, 2102, 2359
SmiMI	CAYNNNNRTG	1 cut(s)	783
SmlI	CTYRAG	2 cut(s)	1335, 2718
SmoI	CTYRAG	2 cut(s)	1335, 2718
SphI	GCATGC	1 cut(s)	1057
SseBI	AGGCCT	1 cut(s)	430
SspDI	GGCGCC	1 cut(s)	243
SspMI	CTAG	5 cut(s)	819, 1110, 1647, 2481, 2567
StuI	AGGCCT	1 cut(s)	430
StyD4I	CCNGG	5 cut(s)	41, 961, 983, 1912, 2557
StyI	CCWWGG	3 cut(s)	1058, 2279, 2607
TaaI	ACNGT	4 cut(s)	1037, 1076, 1727, 2380
TaiI	ACGT	4 cut(s)	77, 802, 1542, 1552
TatI	WGTACW	2 cut(s)	615, 2159
TauI	GCSGC	6 cut(s)	121, 124, 536, 625, 1189, 1949
Tru1I	TTAA	7 cut(s)	71, 237, 360, 365, 390, 1275, 2256
Tru9I	TTAA	7 cut(s)	71, 237, 360, 365, 390, 1275, 2256
TscAI	CASTG	3 cut(s)	1079, 1691, 1732
TseFI	GTSAC	1 cut(s)	938
TseI	GCWGC	2 cut(s)	566, 2486
Tsp45I	GTSAC	1 cut(s)	938
TspGWI	ACGGA	4 cut(s)	151, 618, 1834, 1835
TspRI	CASTG	3 cut(s)	1079, 1691, 1732
VpaK11BI	GGWCC	8 cut(s)	837, 1033, 1088, 1466, 1640, 2036, 2102, 2359
XagI	CCTNNNNNAGG	2 cut(s)	435, 480
XapI	RAATTY	3 cut(s)	315, 1564, 2294
XbaI	TCTAGA	1 cut(s)	2480
XceI	RCATGY	3 cut(s)	622, 1057, 2317
XcmI	CCANNNNNNNNNTGG	1 cut(s)	818
XmnI	GAANNNNTTC	2 cut(s)	690, 2296
XspI	CTAG	5 cut(s)	819, 1110, 1647, 2481, 2567
Zsp2I	ATGCAT	1 cut(s)	1971

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.