Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001577

Physical Location & Seq

Genomic Coordinates Reverse (-)

19853281 .. 19859389

Gene Structure 6109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g17480.14

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3261 bp

ATGTCGTCGGAGAAGCTCCTTGCCACCGGTTTTGTGCAGTCCGATGCAGTGAATATGAATGTGGGGTCTTTCTCCTTCACCCCGATTTTCGAAGAGCTTCCGGTTGCCACCATCATGTCGGTTTCGCGGCCCGAAACCGGAGATATTAGCCCCATGCTTTTGTCTTACACCATTGAGTTTCAGTACAAGCAGTTCAAGTGGCGGTTGCTGAAGAAAGCATCACAAGTTCTCTATTTACATTTTGCTTTGAAGAAACGCGCGATAATTGAGGAGTTTCATGAGAAACAAGAACAGGTTAAAGAATGGCTTCATAGTATTGGAATAGTTGATCAGACAGCAGTAGTGCAAGATGATGACGAACCAGATGATGGGGCGGTCCCTTTACATCATGACGAAAGTGTTAGAAACAGAGATGTTCCATCTCGTGCTGCTCTTCCCATCCTCCGTCCAGCATTAGGAGGCCAGCAGTCCATTTCCGACAGAGGAAAGGAGGCAATGCAGGGCTATTTGAACCATTTTTTGGGGAACATGGATCTAGTCAATTCTCGAGAGGTCTGCAAATTTTTGGAGGTGTCAAAGCTCTCCTTTTTACAGGAGTATGGACCAAAGTTGAAAGAAGGTTATGTTATGGTGAAGCATCTACCAAAAATTACCGGGGCTAACTCTGATGTGAAATCATGTGCATACTTTTGTCTTGATTGTTGCAGCAACAACTGGCAAAAGGTGTGGGCTGTTTTAAAACCTGGGTTCCTGGCCTTACTGGAGGATCCTTTTGACACCGAACTTTTAGACATTATTGTTTTCAATGTACTGCCAGATTCCAATGAAATTGTGCAGTCTCAAATATATTTGGCTAATCAAATAAAGGAACGTAACCCTTTGCGCTATACATTTAGGGTTGCTTGCGGAAATCAAAGCTTAAGGTTAAGAACCACTAGCAATGCTAAAGTTAAAGGATGGGTTACTGCAATAAATGATGCTGTTTCAAGGCCTCATGAAGGTTGGTGTCATCCTCATCAGTTTGGTTCCTTTGCTCCTCCAAGGGGTTTGGCCGATGACGGGAGTCAAGCTCAATGGTTTGTAGATGGCGAAGCAGCATTTGAAGCTATTGCTACTTCTATTGAAGGTGCAAAATCCGAGATTTTCATTACTGGCTGGTGGCTTTGCCCAGAATTGTATCTTAGACGTCCGTTTCATAGCAATTCATCTTCTCGGCTTGATGCATTACTAGAAGAAAAGGCTAAGCAAGGAGTTCAGATTTTCATTCTTCTCTACAAGGAGGTTTCTATTGCTTTAAAAATCAACAGTTCTTACAGCAAGAGATTGCTTTCTAACATTCATGAGAATGTGAGAGTAATGCGCTATCCTGATCGTTTCCCCACAGGCATTTATTTATGGTCACATCATGAAAAACTTGTCATTGTTGATTACCAGATTTGCTTCATGGGAGGATTAGACTTGTGCTTTGGCCGCTATGACACGGTTGAACACAAAGTGGGTGACTGCCCTCCTCATATATGGCCGGGAAAGGATTATTATAACCCAAGAGAATCCGAACCAAATTCTTGGGAGGATGCAATGCAAGATGAATTGGACCGTGAAAAGTATCCGCGTATGCCATGGCATGATGTCCATTGTGCTCTTTGGGGACCGCCCTGTCGTGACATTGCTCGGCACTTTGTTCAGCGTTGGAACCATGCTAAGAGAAACAAAGCTCCAAATGAACAAACAATTCCGCTACTTATGCCTCAGCACCACATGGTTCTCCCCCACTACTTGGGAAGAAGTAGCGAGATAGACATTGAGAAGAAAAACAAAGAAGAAAACCAGAATGGAATCTGCAGAGAGAACTCTTTTTCCTCGCTATCACCGGTGCAAAATATTCCATTGCTTTTGCCTCAAGAAGATGGTTTGGATGCTCCTATTGAAAACCAAAAGTTAAGCGCCGTGAACTTGAATCATAATCTTTTTGACCAGCCAGCTGATGATCTAGACCCTGATACACAGATGAAAGGTTTCACAGATGACCTTCATTCTAAGGATCTCAAAAGTGAAGCAAATTTAAACAACATGACACAATCTGGCTCAACAACTTCAGATGAATCGTCAGAAAGTTCAGAGGGAGGTGATCATACTGTTGCTGCTGATGATTACGGACAAATAGGTCCTCGTACTGCATGCCATTGTCAGGTTGTGAGAAGTGTGAGCCAGTGGTCTGCTGGATCTAGCCAAACTGAAGATAGCATACACAGCGCTTATTGTTCTCTCATTGAGAACGCAGAACATTTTGTTTATATTGAGAATCAATTTTTCATATCAGGTCTTTCGGGGGATGAGATTATACAGAATCGTGTCCTGGAAACGTTGTACAGGCGTATTGTGCTAGCATACAAAGAACAAAAGTGTTTTAGGGTTATTGTTGTCATACCACTATTACCTGGCTTTCAGGGTGGTGTGGACGATGGTGGTGCAGCTACCGTTAGAGCCATAATGCATTGGCAGTACCGTACCATTAGCTGGGAAAAACACTCAATACTGCATAAGCTTAAAGTTAAGCTTGGTCCTAAGACACACGATTACATTTCTTTCTATGGTCTGAGGACATATGGAAGACTTTTCGAAGGTGGCCCTGTGGCAACAAGTCAGGTTTATGTACACAGCAAAGTGATGATAATAGATGATCGTATTTCCTTGATTGGATCATCTAATATTAATGACAGAAGTCTGCTCGGATCAAGAGACTCTGAGATAGGTGTAGTAATTGAGGACAAGGAGTTTCTTGAATCATCTATGAATGGACAACCATGGAAGGCCGGAAAATTTGCATATAGTCTTAGGTGCTCGCTGTGGTCCGAGCACCTTGGTCTCCAGGCAGGGGAGATAAATCAAATCAGTGATCCTGTATTAGACACAACATACAAGAATCTGTGGTTAGAAACTGCGAAGGAAAATTCAATTATTTACGACGATGTCTTTTCTTGCATCCCAAATGATTCTATTCACTCAAGAGCTGCTCTCAGACAATGCAAGGCTCAATGGAAAGACAAACATGGCCACACAACGATCGATTTGGGAATAGCCCCCGAGAAGCTCTTGGAGTCCGGCAAGGAGGGAGAGGCGAAAGAAACAGATCCGATGGAAAGACTGAAGCATGTAAGGGGGCATCTTGTTTCCTTCCCTTTAGAGTTTATGCAGCAAGAAGATTTGAGGCCAGTTTTCAATGAAAGTGAATTTTATACATCCCCTCAAGTATTTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006629 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0006950 GO:0006995 GO:0007154 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009247 GO:0009267 GO:0009395 GO:0009605 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0009991 GO:0010033 GO:0016036 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019374 GO:0019375 GO:0019637 GO:0022622 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0032879 GO:0033554 GO:0042221 GO:0042578 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046434 GO:0046467 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051716 GO:0060627 GO:0065007 GO:0071496 GO:0071704 GO:0099402 GO:1901135 GO:1901137 GO:1901575 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

PH PLDc PLDc_2

Protein Analysis

1087

Amino Acids

123.3

Weight (kDa)

5.71

Isoelectric Point (pI)

45.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16785 AT3G16785 AT3G16785 AT3G16785 AT3G16785 AT3G16785
fragaria_vesca	FvH4_4g18810 FvH4_6g06940 FvH4_6g06940 FvH4_6g06940
malus_domestica	MD04G1197500.v1.1 MD12G1210300.v1.1 MD13G1162600.v1.1 MD16G1162400.v1.1
prunus_persica	Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.1G130000_v2.0.a1 Prupe.6G317900_v2.0.a1 Prupe.6G317900_v2.0.a1 Prupe.6G317900_v2.0.a1
pyrus_communis	pycom04g17480 pycom13g13890 pycom16g13770
rosa_chinensis	RchiOBHm_Chr3g0456481 RchiOBHm_Chr4g0423621
rosa_laevigata	RLG00000007541 RLG00000025302
rosa_multiflora	Rmu_co8413375.1_g000001 Rmu_sc0000464.1_g000017 Rmu_sc0002607.1_g000011 Rmu_sc0008373.1_g000012 Rmu_sc0016309.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365830 Rroxscaffold_6G00422720
rosa_rugosa	Rorug03G0013400 Rorug03G0013400 Rorug03G0013400 Rorug04G0189100
rosa_samantha	Rh3AG073700 Rh3BG075600 Rh3DG076900 Rh4AG248700 Rh4BG254000 Rh4DG249000
rosa_wichuraiana	Rw3G006320 Rw4G021300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1539
AasI	GACNNNNNNGTC	2 cut(s)	1656, 2163
AatII	GACGTC	1 cut(s)	1189
AccB7I	CCANNNNNTGG	4 cut(s)	368, 520, 1777, 2517
AccII	CGCG	4 cut(s)	127, 258, 260, 1612
AciI	CCGC	8 cut(s)	127, 202, 374, 906, 1471, 1610, 1652, 1736
AclI	AACGTT	1 cut(s)	2363
AclWI	GGATC	9 cut(s)	540, 761, 774, 2049, 2230, 2707, 2740, 2891, 3125
AcoI	YGGCCR	4 cut(s)	1050, 1468, 1520, 3052
AcsI	RAATTY	6 cut(s)	560, 1561, 2059, 2819, 2950, 3230
AcuI	CTGAAG	4 cut(s)	230, 2079, 2256, 3167
AcyI	GRCGYC	1 cut(s)	1186
AdeI	CACNNNGTG	1 cut(s)	1495
AfaI	GTAC	7 cut(s)	185, 810, 2173, 2369, 2504, 2509, 2655
AfeI	AGCGCT	1 cut(s)	2254
AflII	CTTAAG	1 cut(s)	919
AgeI	ACCGGT	2 cut(s)	26, 1870
AjnI	CCWGG	5 cut(s)	742, 750, 2355, 2437, 2868
AjuI	GAANNNNNNNTTGG	2 cut(s)	503, 535
AloI	GAACNNNNNNTCC	2 cut(s)	1841, 1873
Alw21I	GWGCWC	3 cut(s)	1642, 2843, 2859
Alw26I	GTCTC	3 cut(s)	843, 2733, 2870
AlwI	GGATC	9 cut(s)	540, 761, 774, 2049, 2230, 2707, 2740, 2891, 3125
Ama87I	CYCGRG	2 cut(s)	546, 3083
Aor51HI	AGCGCT	1 cut(s)	2254
ApeKI	GCWGC	7 cut(s)	428, 705, 1094, 2141, 2471, 3011, 3193
ApoI	RAATTY	6 cut(s)	560, 1561, 2059, 2819, 2950, 3230
ArsI	GACNNNNNNTTYG	2 cut(s)	1448, 1480
AseI	ATTAAT	1 cut(s)	2712
AsiGI	ACCGGT	2 cut(s)	26, 1870
Asp700I	GAANNNNTTC	3 cut(s)	96, 306, 2015
AspLEI	GCGC	5 cut(s)	260, 885, 1362, 1946, 2255
AspS9I	GGNCC	9 cut(s)	129, 376, 602, 1594, 1649, 2165, 2561, 2627, 2850
AsuC2I	CCSGG	2 cut(s)	655, 1524
AsuHPI	GGTGA	5 cut(s)	70, 643, 1511, 1860, 2138
AsuII	TTCGAA	2 cut(s)	90, 2619
AsuNHI	GCTAGC	1 cut(s)	2383
AvaI	CYCGRG	2 cut(s)	546, 3083
AvaII	GGWCC	7 cut(s)	376, 602, 1594, 1649, 2165, 2561, 2850
BalI	TGGCCA	1 cut(s)	3054
BamHI	GGATCC	1 cut(s)	766
BarI	GAAGNNNNNNTAC	2 cut(s)	2229, 2261
BauI	CACGAG	1 cut(s)	423
BbsI	GAAGAC	1 cut(s)	2617
Bbv12I	GWGCWC	3 cut(s)	1642, 2843, 2859
BbvCI	CCTCAGC	1 cut(s)	1749
BbvI	GCAGC	7 cut(s)	415, 717, 1106, 2128, 2483, 2998, 3205
BccI	CCATC	9 cut(s)	119, 362, 427, 446, 951, 1079, 1901, 2456, 3130
BceAI	ACGGC	1 cut(s)	1931
BcgI	CGANNNNNNTGC	4 cut(s)	537, 571, 2450, 2484
BciT130I	CCWGG	5 cut(s)	744, 752, 2357, 2439, 2870
BciVI	GTATCC	1 cut(s)	1617
BclI	TGATCA	2 cut(s)	328, 2128
BcnI	CCSGG	2 cut(s)	655, 1524
BcoDI	GTCTC	3 cut(s)	843, 2733, 2870
BfaI	CTAG	6 cut(s)	536, 936, 1229, 1991, 2226, 2384
BfmI	CTRYAG	1 cut(s)	1840
BfoI	RGCGCY	2 cut(s)	1947, 2256
BfrI	CTTAAG	1 cut(s)	919
BfuI	GTATCC	1 cut(s)	1617
BisI	GCNGC	9 cut(s)	128, 429, 706, 1095, 1471, 2142, 2472, 3012, 3194
BlpI	GCTNAGC	1 cut(s)	1242
BlsI	GCNGC	9 cut(s)	129, 430, 707, 1096, 1472, 2143, 2473, 3013, 3195
Bme1390I	CCNGG	7 cut(s)	655, 744, 752, 1524, 2357, 2439, 2870
Bme18I	GGWCC	7 cut(s)	376, 602, 1594, 1649, 2165, 2561, 2850
BmeT110I	CYCGRG	2 cut(s)	546, 3083
BmgT120I	GGNCC	9 cut(s)	129, 376, 602, 1594, 1649, 2165, 2561, 2627, 2850
BmiI	GGNNCC	6 cut(s)	378, 749, 768, 1027, 1650, 1694
BmrFI	CCNGG	7 cut(s)	655, 744, 752, 1524, 2357, 2439, 2870
BmsI	GCATC	9 cut(s)	34, 227, 646, 967, 1210, 1564, 1906, 2991, 3172
BmtI	GCTAGC	1 cut(s)	2387
BoxI	GACNNNNGTC	2 cut(s)	1062, 2721
BpiI	GAAGAC	1 cut(s)	2617
BplI	GAGNNNNNCTC	4 cut(s)	1054, 1086, 3000, 3032
BpmI	CTGGAG	2 cut(s)	782, 2852
Bpu10I	CCTNAGC	1 cut(s)	1749
Bpu1102I	GCTNAGC	1 cut(s)	1242
Bpu14I	TTCGAA	2 cut(s)	90, 2619
BpuEI	CTTGAG	3 cut(s)	1884, 2989, 3231
BpuMI	CCSGG	2 cut(s)	655, 1524
Bsa29I	ATCGAT	1 cut(s)	3066
BsaHI	GRCGYC	1 cut(s)	1186
BsaI	GGTCTC	1 cut(s)	2870
BsaJI	CCNNGG	6 cut(s)	654, 743, 1040, 1619, 2804, 2860
BsaWI	WCCGGW	4 cut(s)	26, 100, 137, 1870
Bse118I	RCCGGY	2 cut(s)	26, 1870
Bse1I	ACTGG	5 cut(s)	719, 765, 1156, 2209, 3212
Bse3DI	GCAATG	5 cut(s)	501, 946, 1584, 1665, 1886
BseBI	CCWGG	5 cut(s)	744, 752, 2357, 2439, 2870
BseCI	ATCGAT	1 cut(s)	3066
BseDI	CCNNGG	6 cut(s)	654, 743, 1040, 1619, 2804, 2860
BseGI	GGATG	8 cut(s)	438, 962, 1009, 1579, 1921, 2338, 2982, 3239
BseMI	GCAATG	5 cut(s)	501, 946, 1584, 1665, 1886
BseMII	CTCAG	4 cut(s)	1763, 2588, 2736, 3031
BseNI	ACTGG	5 cut(s)	719, 765, 1156, 2209, 3212
BseRI	GAGGAG	3 cut(s)	284, 1026, 1500
BseXI	GCAGC	7 cut(s)	415, 717, 1106, 2128, 2483, 2998, 3205
BseYI	CCCAGC	1 cut(s)	2517
BsgI	GTGCAG	3 cut(s)	56, 854, 2490
Bsh1236I	CGCG	4 cut(s)	127, 258, 260, 1612
Bsh1285I	CGRYCG	1 cut(s)	3066
BshTI	ACCGGT	2 cut(s)	26, 1870
BshVI	ATCGAT	1 cut(s)	3066
BsiEI	CGRYCG	1 cut(s)	3066
BsiHKAI	GWGCWC	3 cut(s)	1642, 2843, 2859
BsiHKCI	CYCGRG	2 cut(s)	546, 3083
BsiSI	CCGG	8 cut(s)	27, 101, 138, 654, 1523, 1871, 2814, 3102
BslFI	GGGAC	2 cut(s)	362, 1662
BsmAI	GTCTC	3 cut(s)	843, 2733, 2870
BsmFI	GGGAC	2 cut(s)	362, 1662
Bso31I	GGTCTC	1 cut(s)	2870
BsoBI	CYCGRG	2 cut(s)	546, 3083
Bsp119I	TTCGAA	2 cut(s)	90, 2619
Bsp1286I	GDGCHC	3 cut(s)	1642, 2843, 2859
Bsp1407I	TGTACA	2 cut(s)	2367, 2653
Bsp1720I	GCTNAGC	1 cut(s)	1242
Bsp19I	CCATGG	2 cut(s)	1619, 2804
BspACI	CCGC	8 cut(s)	127, 202, 374, 906, 1471, 1610, 1652, 1736
BspCNI	CTCAG	4 cut(s)	1762, 2589, 2737, 3030
BspDI	ATCGAT	1 cut(s)	3066
BspFNI	CGCG	4 cut(s)	127, 258, 260, 1612
BspHI	TCATGA	5 cut(s)	277, 388, 994, 1339, 1405
BspLI	GGNNCC	6 cut(s)	378, 749, 768, 1027, 1650, 1694
BspMAI	CTGCAG	1 cut(s)	1844
BspOI	GCTAGC	1 cut(s)	2387
BspPI	GGATC	9 cut(s)	540, 761, 774, 2049, 2230, 2707, 2740, 2891, 3125
BspQI	GCTCTTC	2 cut(s)	87, 438
BspT104I	TTCGAA	2 cut(s)	90, 2619
BspTI	CTTAAG	1 cut(s)	919
BspTNI	GGTCTC	1 cut(s)	2870
BsrDI	GCAATG	5 cut(s)	501, 946, 1584, 1665, 1886
BsrFI	RCCGGY	2 cut(s)	26, 1870
BsrGI	TGTACA	2 cut(s)	2367, 2653
BsrI	ACTGG	5 cut(s)	719, 765, 1156, 2209, 3212
BssAI	RCCGGY	2 cut(s)	26, 1870
BssECI	CCNNGG	6 cut(s)	654, 743, 1040, 1619, 2804, 2860
BssNI	GRCGYC	1 cut(s)	1186
BssSI	CACGAG	1 cut(s)	423
BssT1I	CCWWGG	4 cut(s)	1040, 1619, 2804, 2860
Bst2BI	CACGAG	1 cut(s)	423
Bst2UI	CCWGG	5 cut(s)	744, 752, 2357, 2439, 2870
Bst4CI	ACNGT	6 cut(s)	1307, 1483, 1598, 2137, 2479, 2507
Bst6I	CTCTTC	2 cut(s)	87, 438
BstACI	GRCGYC	1 cut(s)	1186
BstAFI	CTTAAG	1 cut(s)	919
BstAUI	TGTACA	2 cut(s)	2367, 2653
BstBI	TTCGAA	2 cut(s)	90, 2619
BstC8I	GCNNGC	6 cut(s)	464, 904, 1980, 2179, 2385, 2843
BstDSI	CCRYGG	2 cut(s)	1619, 2804
BstENI	CCTNNNNNAGG	1 cut(s)	996
BstF5I	GGATG	8 cut(s)	438, 962, 1009, 1579, 1921, 2338, 2982, 3239
BstFNI	CGCG	4 cut(s)	127, 258, 260, 1612
BstH2I	RGCGCY	2 cut(s)	1947, 2256
BstHHI	GCGC	5 cut(s)	260, 885, 1362, 1946, 2255
BstMAI	GTCTC	3 cut(s)	843, 2733, 2870
BstMCI	CGRYCG	1 cut(s)	3066
BstMWI	GCNNNNNNNGC	5 cut(s)	1103, 1470, 1744, 2250, 2380
BstNI	CCWGG	5 cut(s)	744, 752, 2357, 2439, 2870
BstNSI	RCATGY	2 cut(s)	2181, 3155
BstPAI	GACNNNNGTC	2 cut(s)	1062, 2721
BstSCI	CCNGG	7 cut(s)	653, 742, 750, 1522, 2355, 2437, 2868
BstSFI	CTRYAG	1 cut(s)	1840
BstUI	CGCG	4 cut(s)	127, 258, 260, 1612
BstV1I	GCAGC	7 cut(s)	415, 717, 1106, 2128, 2483, 2998, 3205
BstV2I	GAAGAC	1 cut(s)	2617
BstX2I	RGATCY	5 cut(s)	532, 766, 2041, 2222, 3130
BstXI	CCANNNNNNTGG	1 cut(s)	1566
BstYI	RGATCY	5 cut(s)	532, 766, 2041, 2222, 3130
Bsu15I	ATCGAT	1 cut(s)	3066
BsuI	GTATCC	1 cut(s)	1617
BsuTUI	ATCGAT	1 cut(s)	3066
BtgI	CCRYGG	2 cut(s)	1619, 2804
BtsCI	GGATG	8 cut(s)	438, 962, 1009, 1579, 1921, 2338, 2982, 3239
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	3 cut(s)	54, 2216, 2899
Cac8I	GCNNGC	6 cut(s)	464, 904, 1980, 2179, 2385, 2843
CciI	TCATGA	5 cut(s)	277, 388, 994, 1339, 1405
CfoI	GCGC	5 cut(s)	260, 885, 1362, 1946, 2255
Cfr10I	RCCGGY	2 cut(s)	26, 1870
Cfr13I	GGNCC	9 cut(s)	129, 376, 602, 1594, 1649, 2165, 2561, 2627, 2850
ClaI	ATCGAT	1 cut(s)	3066
Csp6I	GTAC	7 cut(s)	184, 809, 2172, 2368, 2503, 2508, 2654
CspAI	ACCGGT	2 cut(s)	26, 1870
CspCI	CAANNNNNGTGG	4 cut(s)	13, 48, 707, 742
CviQI	GTAC	7 cut(s)	184, 809, 2172, 2368, 2503, 2508, 2654
DraI	TTTAAA	3 cut(s)	738, 1296, 2064
DraIII	CACNNNGTG	1 cut(s)	1495
DrdI	GACNNNNNNGTC	2 cut(s)	1656, 2163
DseDI	GACNNNNNNGTC	2 cut(s)	1656, 2163
EaeI	YGGCCR	4 cut(s)	1050, 1468, 1520, 3052
Eam1104I	CTCTTC	2 cut(s)	87, 438
EarI	CTCTTC	2 cut(s)	87, 438
Eco130I	CCWWGG	4 cut(s)	1040, 1619, 2804, 2860
Eco147I	AGGCCT	1 cut(s)	991
Eco31I	GGTCTC	1 cut(s)	2870
Eco47I	GGWCC	7 cut(s)	376, 602, 1594, 1649, 2165, 2561, 2850
Eco47III	AGCGCT	1 cut(s)	2254
Eco57I	CTGAAG	4 cut(s)	230, 2079, 2256, 3167
Eco88I	CYCGRG	2 cut(s)	546, 3083
EcoNI	CCTNNNNNAGG	1 cut(s)	996
EcoO109I	RGGNCCY	1 cut(s)	2165
EcoRII	CCWGG	5 cut(s)	742, 750, 2355, 2437, 2868
EcoT14I	CCWWGG	4 cut(s)	1040, 1619, 2804, 2860
EcoT22I	ATGCAT	2 cut(s)	1225, 2496
ErhI	CCWWGG	4 cut(s)	1040, 1619, 2804, 2860
FalI	AAGNNNNNCTT	6 cut(s)	291, 323, 569, 601, 2541, 2573
FaqI	GGGAC	2 cut(s)	362, 1662
FauNDI	CATATG	1 cut(s)	2605
FbaI	TGATCA	2 cut(s)	328, 2128
Fnu4HI	GCNGC	9 cut(s)	128, 429, 706, 1095, 1471, 2142, 2472, 3012, 3194
FokI	GGATG	8 cut(s)	425, 969, 996, 1586, 1928, 2345, 2969, 3226
Fsp4HI	GCNGC	9 cut(s)	128, 429, 706, 1095, 1471, 2142, 2472, 3012, 3194
FspBI	CTAG	6 cut(s)	536, 936, 1229, 1991, 2226, 2384
GlaI	GCGC	5 cut(s)	259, 884, 1361, 1945, 2254
GluI	GCNGC	9 cut(s)	128, 429, 706, 1095, 1471, 2142, 2472, 3012, 3194
GsaI	CCCAGC	1 cut(s)	2521
GsuI	CTGGAG	2 cut(s)	782, 2852
HaeII	RGCGCY	2 cut(s)	1947, 2256
HapII	CCGG	8 cut(s)	27, 101, 138, 654, 1523, 1871, 2814, 3102
HhaI	GCGC	5 cut(s)	260, 885, 1362, 1946, 2255
Hin1I	GRCGYC	1 cut(s)	1186
Hin6I	GCGC	5 cut(s)	258, 883, 1360, 1944, 2253
HinP1I	GCGC	5 cut(s)	258, 883, 1360, 1944, 2253
HindIII	AAGCTT	3 cut(s)	916, 2543, 2555
HpaII	CCGG	8 cut(s)	27, 101, 138, 654, 1523, 1871, 2814, 3102
HphI	GGTGA	5 cut(s)	70, 643, 1511, 1860, 2138
Hpy166II	GTNNAC	3 cut(s)	1951, 2458, 2656
Hpy8I	GTNNAC	3 cut(s)	1951, 2458, 2656
Hpy99I	CGWCG	2 cut(s)	10, 2969
HpyAV	CCTTC	9 cut(s)	85, 611, 992, 1118, 2039, 2615, 2803, 2938, 3184
HpyCH4III	ACNGT	6 cut(s)	1307, 1483, 1598, 2137, 2479, 2507
HpyCH4IV	ACGT	3 cut(s)	871, 1186, 2363
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1103, 1470, 1744, 2250, 2380
HpySE526I	ACGT	3 cut(s)	871, 1186, 2363
Hsp92I	GRCGYC	1 cut(s)	1186
HspAI	GCGC	5 cut(s)	258, 883, 1360, 1944, 2253
Ksp22I	TGATCA	2 cut(s)	328, 2128
LguI	GCTCTTC	2 cut(s)	87, 438
LmnI	GCTCC	4 cut(s)	21, 1039, 1720, 1924
Lsp1109I	GCAGC	7 cut(s)	415, 717, 1106, 2128, 2483, 2998, 3205
LweI	GCATC	9 cut(s)	34, 227, 646, 967, 1210, 1564, 1906, 2991, 3172
MaeI	CTAG	6 cut(s)	536, 936, 1229, 1991, 2226, 2384
MaeII	ACGT	3 cut(s)	871, 1186, 2363
MaeIII	GTNAC	5 cut(s)	872, 961, 1398, 1499, 1661
MflI	RGATCY	5 cut(s)	532, 766, 2041, 2222, 3130
MhlI	GDGCHC	3 cut(s)	1642, 2843, 2859
MlsI	TGGCCA	1 cut(s)	3054
MluNI	TGGCCA	1 cut(s)	3054
MlyI	GAGTC	3 cut(s)	1072, 2735, 3107
MmeI	TCCRAC	2 cut(s)	501, 1670
Mox20I	TGGCCA	1 cut(s)	3054
Mph1103I	ATGCAT	2 cut(s)	1225, 2496
MroXI	GAANNNNTTC	3 cut(s)	96, 306, 2015
MscI	TGGCCA	1 cut(s)	3054
MslI	CAYNNNNRTG	2 cut(s)	113, 1344
Msp20I	TGGCCA	1 cut(s)	3054
MspA1I	CMGCKG	1 cut(s)	1982
MspCI	CTTAAG	1 cut(s)	919
MspI	CCGG	8 cut(s)	27, 101, 138, 654, 1523, 1871, 2814, 3102
MspR9I	CCNGG	7 cut(s)	655, 744, 752, 1524, 2357, 2439, 2870
MvaI	CCWGG	5 cut(s)	744, 752, 2357, 2439, 2870
MvnI	CGCG	4 cut(s)	127, 258, 260, 1612
MwoI	GCNNNNNNNGC	5 cut(s)	1103, 1470, 1744, 2250, 2380
NciI	CCSGG	2 cut(s)	655, 1524
NcoI	CCATGG	2 cut(s)	1619, 2804
NdeI	CATATG	1 cut(s)	2605
NheI	GCTAGC	1 cut(s)	2383
NlaIV	GGNNCC	6 cut(s)	378, 749, 768, 1027, 1650, 1694
NmeAIII	GCCGAG	2 cut(s)	1192, 1651
NmuCI	GTSAC	3 cut(s)	1398, 1499, 1661
NsiI	ATGCAT	2 cut(s)	1225, 2496
NspI	RCATGY	2 cut(s)	2181, 3155
NspV	TTCGAA	2 cut(s)	90, 2619
PaeI	GCATGC	1 cut(s)	2181
PaeR7I	CTCGAG	1 cut(s)	546
PagI	TCATGA	5 cut(s)	277, 388, 994, 1339, 1405
PceI	AGGCCT	1 cut(s)	991
PciSI	GCTCTTC	2 cut(s)	87, 438
PdmI	GAANNNNTTC	3 cut(s)	96, 306, 2015
PflFI	GACNNNGTC	1 cut(s)	2969
PflMI	CCANNNNNTGG	4 cut(s)	368, 520, 1777, 2517
PfoI	TCCNGGA	1 cut(s)	2355
PinAI	ACCGGT	2 cut(s)	26, 1870
PkrI	GCNGC	9 cut(s)	129, 430, 707, 1096, 1472, 2143, 2473, 3013, 3195
Ple19I	CGATCG	1 cut(s)	3066
PleI	GAGTC	3 cut(s)	1071, 2735, 3106
PpsI	GAGTC	3 cut(s)	1071, 2735, 3106
PpuMI	RGGWCCY	1 cut(s)	2165
PshAI	GACNNNNGTC	2 cut(s)	1062, 2721
PshBI	ATTAAT	1 cut(s)	2712
PsiI	TTATAA	1 cut(s)	1539
Psp1406I	AACGTT	1 cut(s)	2363
Psp5II	RGGWCCY	1 cut(s)	2165
Psp6I	CCWGG	5 cut(s)	742, 750, 2355, 2437, 2868
PspFI	CCCAGC	1 cut(s)	2517
PspGI	CCWGG	5 cut(s)	742, 750, 2355, 2437, 2868
PspN4I	GGNNCC	6 cut(s)	378, 749, 768, 1027, 1650, 1694
PspPI	GGNCC	9 cut(s)	129, 376, 602, 1594, 1649, 2165, 2561, 2627, 2850
PspPPI	RGGWCCY	1 cut(s)	2165
PsrI	GAACNNNNNNTAC	2 cut(s)	176, 208
PstI	CTGCAG	1 cut(s)	1844
PsuI	RGATCY	5 cut(s)	532, 766, 2041, 2222, 3130
PsyI	GACNNNGTC	1 cut(s)	2969
PvuI	CGATCG	1 cut(s)	3066
PvuII	CAGCTG	1 cut(s)	1982
RsaI	GTAC	7 cut(s)	185, 810, 2173, 2369, 2504, 2509, 2655
RsaNI	GTAC	7 cut(s)	184, 809, 2172, 2368, 2503, 2508, 2654
RseI	CAYNNNNRTG	2 cut(s)	113, 1344
SapI	GCTCTTC	2 cut(s)	87, 438
SatI	GCNGC	9 cut(s)	128, 429, 706, 1095, 1471, 2142, 2472, 3012, 3194
Sau96I	GGNCC	9 cut(s)	129, 376, 602, 1594, 1649, 2165, 2561, 2627, 2850
SchI	GAGTC	3 cut(s)	1072, 2735, 3107
ScrFI	CCNGG	7 cut(s)	655, 744, 752, 1524, 2357, 2439, 2870
SduI	GDGCHC	3 cut(s)	1642, 2843, 2859
SfaNI	GCATC	9 cut(s)	34, 227, 646, 967, 1210, 1564, 1906, 2991, 3172
SfcI	CTRYAG	1 cut(s)	1840
Sfr274I	CTCGAG	1 cut(s)	546
SfuI	TTCGAA	2 cut(s)	90, 2619
SgrAI	CRCCGGYG	1 cut(s)	1870
SinI	GGWCC	7 cut(s)	376, 602, 1594, 1649, 2165, 2561, 2850
SlaI	CTCGAG	1 cut(s)	546
SmiMI	CAYNNNNRTG	2 cut(s)	113, 1344
SmlI	CTYRAG	5 cut(s)	546, 919, 1899, 3004, 3246
SmoI	CTYRAG	5 cut(s)	546, 919, 1899, 3004, 3246
SphI	GCATGC	1 cut(s)	2181
SseBI	AGGCCT	1 cut(s)	991
SsiI	CCGC	8 cut(s)	127, 202, 374, 906, 1471, 1610, 1652, 1736
SspI	AATATT	2 cut(s)	1882, 2710
SspMI	CTAG	6 cut(s)	536, 936, 1229, 1991, 2226, 2384
StuI	AGGCCT	1 cut(s)	991
StyD4I	CCNGG	7 cut(s)	653, 742, 750, 1522, 2355, 2437, 2868
StyI	CCWWGG	4 cut(s)	1040, 1619, 2804, 2860
TaaI	ACNGT	6 cut(s)	1307, 1483, 1598, 2137, 2479, 2507
TaiI	ACGT	3 cut(s)	874, 1189, 2366
TaqI	TCGA	4 cut(s)	90, 547, 2619, 3066
TatI	WGTACW	4 cut(s)	183, 808, 2367, 2653
TauI	GCSGC	2 cut(s)	130, 1473
TscAI	CASTG	3 cut(s)	54, 2216, 2899
TseFI	GTSAC	3 cut(s)	1398, 1499, 1661
TseI	GCWGC	7 cut(s)	428, 705, 1094, 2141, 2471, 3011, 3193
Tsp45I	GTSAC	3 cut(s)	1398, 1499, 1661
TspGWI	ACGGA	3 cut(s)	434, 1179, 2169
TspRI	CASTG	3 cut(s)	54, 2216, 2899
Tth111I	GACNNNGTC	1 cut(s)	2969
Van91I	CCANNNNNTGG	4 cut(s)	368, 520, 1777, 2517
Vha464I	CTTAAG	1 cut(s)	919
VpaK11BI	GGWCC	7 cut(s)	376, 602, 1594, 1649, 2165, 2561, 2850
VspI	ATTAAT	1 cut(s)	2712
XagI	CCTNNNNNAGG	1 cut(s)	996
XapI	RAATTY	6 cut(s)	560, 1561, 2059, 2819, 2950, 3230
XbaI	TCTAGA	1 cut(s)	1990
XceI	RCATGY	2 cut(s)	2181, 3155
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2216
XhoI	CTCGAG	1 cut(s)	546
XmnI	GAANNNNTTC	3 cut(s)	96, 306, 2015
XspI	CTAG	6 cut(s)	536, 936, 1229, 1991, 2226, 2384
ZraI	GACGTC	1 cut(s)	1187
Zsp2I	ATGCAT	2 cut(s)	1225, 2496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.