Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003660

Physical Location & Seq

Genomic Coordinates Reverse (-)

21473947 .. 21475196

Gene Structure 1250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g19750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCATCAGCCGAAATAAAATCTGGGGCATTGGTTACACTGCAAGACCTGCACCCATCTTCCTCGTACTTCAAGCAAGGAGCTTCACTACGAGTAACCGGAAAGTTACAAGATTATTCTGTAGAGACAGCCATTGCCACAATTGTCGATGGAAGTGAGAGATTAAAAATCAACACTCAGCACCTTCGGGAGCTTAGTTTTCGACTTGGATCCGTCTACCAGTTCATCGGCGAGCTGCTTATTCAACCGGACAATGAGGCAGTGTTGCAGGGACGTGTGGGTAGGAATGTCGACGGCATTGATCTCAATCTTTATCATCAGTCTCTTCAATTGTTAAGACAATTTCGGGCCAATCATGTGAAGAACCCAGTAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0000781 GO:0003674 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006139 GO:0006259 GO:0006457 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010521 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0030234 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0042592 GO:0043086 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044092 GO:0044183 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045934 GO:0046483 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051276 GO:0051338 GO:0051348 GO:0051972 GO:0051974 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098687 GO:0098727 GO:0098772 GO:1901360 GO:2000112 GO:2000113 GO:2000278 GO:2000279

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ten1_2

Protein Analysis

126

Amino Acids

13.9

Weight (kDa)

8.08

Isoelectric Point (pI)

31.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ten1_2	PF15490	6 - 118	6.4e-35	Telomere-capping, CST complex subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56260 AT1G56260
fragaria_vesca	FvH4_6g06960 FvH4_6g06960 FvH4_6g06960
malus_domestica	MD04G1197300.v1.1 MD12G1210100.v1.1
prunus_persica	Prupe.2G221300_v2.0.a1 Prupe.2G221300_v2.0.a1 Prupe.2G221300_v2.0.a1 Prupe.2G221300_v2.0.a1 Prupe.3G209800_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1
pyrus_communis	pycom04g17440 pycom12g19750
rosa_chinensis	RchiOBHm_Chr3g0456501
rosa_laevigata	RLG00000025300
rosa_multiflora	Rmu_sc0002607.1_g000009 Rmu_sc0031879.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422690
rosa_rugosa	Rorug03G0013400 Rorug03G0013400
rosa_samantha	Rh3AG073900 Rh3BG075800 Rh3CG075300 Rh3DG077500
rosa_wichuraiana	Rw3G006340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	57
AccI	GTMKAC	2 cut(s)	216, 291
AclWI	GGATC	2 cut(s)	204, 217
AfaI	GTAC	1 cut(s)	68
AflIII	ACRYGT	1 cut(s)	274
AgsI	TTSAA	3 cut(s)	73, 245, 329
AjiI	CACGTC	1 cut(s)	275
AluBI	AGCT	3 cut(s)	83, 193, 235
AluI	AGCT	3 cut(s)	83, 193, 235
Alw26I	GTCTC	2 cut(s)	119, 327
AlwI	GGATC	2 cut(s)	204, 217
AoxI	GGCC	1 cut(s)	348
ApeKI	GCWGC	1 cut(s)	235
AspS9I	GGNCC	1 cut(s)	348
BamHI	GGATCC	1 cut(s)	209
BbvI	GCAGC	1 cut(s)	222
BccI	CCATC	2 cut(s)	64, 143
BceAI	ACGGC	1 cut(s)	310
BcoDI	GTCTC	2 cut(s)	119, 327
BfmI	CTRYAG	1 cut(s)	120
BfuAI	ACCTGC	1 cut(s)	57
BisI	GCNGC	1 cut(s)	236
BlsI	GCNGC	1 cut(s)	237
BmgBI	CACGTC	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	348
BmiI	GGNNCC	1 cut(s)	211
BmrI	ACTGGG	1 cut(s)	362
BmsI	GCATC	1 cut(s)	14
BmuI	ACTGGG	1 cut(s)	362
BsaBI	GATNNNNATC	1 cut(s)	306
BsaWI	WCCGGW	2 cut(s)	98, 247
Bse1I	ACTGG	2 cut(s)	220, 368
Bse3DI	GCAATG	1 cut(s)	132
Bse8I	GATNNNNATC	1 cut(s)	306
BseJI	GATNNNNATC	1 cut(s)	306
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	191
BseNI	ACTGG	2 cut(s)	220, 368
BseXI	GCAGC	1 cut(s)	222
BsgI	GTGCAG	1 cut(s)	35
BshFI	GGCC	1 cut(s)	350
BsiSI	CCGG	2 cut(s)	99, 248
BslFI	GGGAC	1 cut(s)	285
BsmAI	GTCTC	2 cut(s)	119, 327
BsmFI	GGGAC	1 cut(s)	285
BsnI	GGCC	1 cut(s)	350
Bsp143I	GATC	2 cut(s)	209, 301
BspANI	GGCC	1 cut(s)	350
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	211
BspMI	ACCTGC	1 cut(s)	57
BspPI	GGATC	2 cut(s)	204, 217
BsrDI	GCAATG	1 cut(s)	132
BsrI	ACTGG	2 cut(s)	220, 368
BssMI	GATC	2 cut(s)	209, 301
Bst6I	CTCTTC	1 cut(s)	330
BstAPI	GCANNNNNTGC	1 cut(s)	49
BstC8I	GCNNGC	1 cut(s)	233
BstDEI	CTNAG	2 cut(s)	177, 194
BstKTI	GATC	2 cut(s)	212, 304
BstMAI	GTCTC	2 cut(s)	119, 327
BstMBI	GATC	2 cut(s)	209, 301
BstMWI	GCNNNNNNNGC	1 cut(s)	49
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	222
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
BsuRI	GGCC	1 cut(s)	350
BtrI	CACGTC	1 cut(s)	275
BtsI	GCAGTG	2 cut(s)	38, 267
BtsIMutI	CAGTG	2 cut(s)	38, 267
BveI	ACCTGC	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	233
Cfr13I	GGNCC	1 cut(s)	348
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	1 cut(s)	356
CviJI	RGCY	6 cut(s)	11, 83, 131, 193, 235, 350
CviKI_1	RGCY	6 cut(s)	11, 83, 131, 193, 235, 350
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	2 cut(s)	177, 194
DpnI	GATC	2 cut(s)	211, 303
DpnII	GATC	2 cut(s)	209, 301
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
FaeI	CATG	1 cut(s)	359
FaiI	YATR	1 cut(s)	357
FaqI	GGGAC	1 cut(s)	285
FatI	CATG	1 cut(s)	355
FblI	GTMKAC	2 cut(s)	216, 291
Fnu4HI	GCNGC	1 cut(s)	236
Fsp4HI	GCNGC	1 cut(s)	236
GluI	GCNGC	1 cut(s)	236
HaeIII	GGCC	1 cut(s)	350
HapII	CCGG	2 cut(s)	99, 248
Hin1II	CATG	1 cut(s)	359
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HpaII	CCGG	2 cut(s)	99, 248
Hpy166II	GTNNAC	2 cut(s)	217, 292
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	2 cut(s)	217, 292
Hpy99I	CGWCG	1 cut(s)	296
HpyAV	CCTTC	1 cut(s)	194
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	3 cut(s)	43, 52, 268
HpyF10VI	GCNNNNNNNGC	1 cut(s)	49
HpyF3I	CTNAG	2 cut(s)	177, 194
HpySE526I	ACGT	1 cut(s)	274
Hsp92II	CATG	1 cut(s)	359
Kzo9I	GATC	2 cut(s)	209, 301
LmnI	GCTCC	2 cut(s)	80, 190
LpnPI	CCDG	6 cut(s)	9, 62, 112, 233, 254, 261
Lsp1109I	GCAGC	1 cut(s)	222
LweI	GCATC	1 cut(s)	14
MaeII	ACGT	1 cut(s)	274
MaeIII	GTNAC	3 cut(s)	34, 94, 105
MalI	GATC	2 cut(s)	211, 303
MboI	GATC	2 cut(s)	209, 301
MboII	GAAGA	3 cut(s)	51, 317, 373
MfeI	CAATTG	2 cut(s)	141, 329
MflI	RGATCY	1 cut(s)	209
MluCI	AATT	3 cut(s)	141, 329, 341
MnlI	CCTC	2 cut(s)	73, 250
MseI	TTAA	2 cut(s)	164, 335
MspI	CCGG	2 cut(s)	99, 248
MunI	CAATTG	2 cut(s)	141, 329
MwoI	GCNNNNNNNGC	1 cut(s)	49
NdeII	GATC	2 cut(s)	209, 301
NlaIII	CATG	1 cut(s)	359
NlaIV	GGNNCC	1 cut(s)	211
PkrI	GCNGC	1 cut(s)	237
PspN4I	GGNNCC	1 cut(s)	211
PspPI	GGNCC	1 cut(s)	348
PsuI	RGATCY	1 cut(s)	209
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
SalI	GTCGAC	1 cut(s)	290
SaqAI	TTAA	2 cut(s)	164, 335
SatI	GCNGC	1 cut(s)	236
Sau3AI	GATC	2 cut(s)	209, 301
Sau96I	GGNCC	1 cut(s)	348
SetI	ASST	6 cut(s)	51, 85, 186, 195, 237, 277
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	120
Sse9I	AATT	3 cut(s)	141, 329, 341
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	3 cut(s)	147, 202, 291
TasI	AATT	3 cut(s)	141, 329, 341
Tru1I	TTAA	2 cut(s)	164, 335
Tru9I	TTAA	2 cut(s)	164, 335
TscAI	CASTG	2 cut(s)	45, 267
TseI	GCWGC	1 cut(s)	235
TspDTI	ATGAA	1 cut(s)	214
TspGWI	ACGGA	1 cut(s)	202
TspRI	CASTG	2 cut(s)	45, 267
XmiI	GTMKAC	2 cut(s)	216, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.