Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003660

Physical Location & Seq

Genomic Coordinates Forward (+)

21543542 .. 21544381

Gene Structure 840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G209800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGAGAGGAGTGGTAGAAAGAAAGATGAACTAGAGGTCGACTTGCTGATACAGATATTGGAGATATTACAAGAGTATTCTGTAGAGACAGCCATTGCCACAATTGTTGATGGAAGTGACAGCTTAAAAATCAACATCCAACACCTCAGGGAGCTTAGCTTTCGAGTCGGATCCATCTACCAGTTCATCGGCGAGCTGCTTATTCAACCCGATAATGAGGTGCTGGCCTTCATCACAACACATGAATGTTATGTTAATTATGTTAGAGGAATAAGCTCAATTGCACTTGTGGGTAGGAATGTTGATGGCATTGATCTCAATCTCTATTATCAGTCTCTCCAATTGTTGAGACAATTTCAGGCTCATCATTTGAAGAACCCAGCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0000781 GO:0003674 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006139 GO:0006259 GO:0006457 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010521 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0030234 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0042592 GO:0043086 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044092 GO:0044183 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045934 GO:0046483 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051276 GO:0051338 GO:0051348 GO:0051972 GO:0051974 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098687 GO:0098727 GO:0098772 GO:1901360 GO:2000112 GO:2000113 GO:2000278 GO:2000279

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ten1_2

Protein Analysis

130

Amino Acids

14.73

Weight (kDa)

5.09

Isoelectric Point (pI)

34.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56260 AT1G56260
fragaria_vesca	FvH4_6g06960 FvH4_6g06960 FvH4_6g06960
malus_domestica	MD04G1197300.v1.1 MD12G1210100.v1.1
prunus_persica	Prupe.2G221300_v2.0.a1 Prupe.2G221300_v2.0.a1 Prupe.2G221300_v2.0.a1 Prupe.2G221300_v2.0.a1 Prupe.3G209800_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1
pyrus_communis	pycom04g17440 pycom12g19750
rosa_chinensis	RchiOBHm_Chr3g0456501
rosa_laevigata	RLG00000025300
rosa_multiflora	Rmu_sc0002607.1_g000009 Rmu_sc0031879.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422690
rosa_rugosa	Rorug03G0013400 Rorug03G0013400
rosa_samantha	Rh3AG073900 Rh3BG075800 Rh3CG075300 Rh3DG077500
rosa_wichuraiana	Rw3G006340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	39
AclWI	GGATC	2 cut(s)	165, 178
AgsI	TTSAA	2 cut(s)	206, 373
AluBI	AGCT	5 cut(s)	123, 154, 159, 196, 276
AluI	AGCT	5 cut(s)	123, 154, 159, 196, 276
Alw26I	GTCTC	3 cut(s)	80, 339, 343
AlwI	GGATC	2 cut(s)	165, 178
AoxI	GGCC	1 cut(s)	225
ApeKI	GCWGC	1 cut(s)	196
AxyI	CCTNAGG	1 cut(s)	146
BamHI	GGATCC	1 cut(s)	170
BbvI	GCAGC	1 cut(s)	183
BccI	CCATC	3 cut(s)	104, 182, 299
BcoDI	GTCTC	3 cut(s)	80, 339, 343
BfaI	CTAG	1 cut(s)	32
BfmI	CTRYAG	1 cut(s)	81
BisI	GCNGC	1 cut(s)	197
BlpI	GCTNAGC	1 cut(s)	155
BlsI	GCNGC	1 cut(s)	198
BmiI	GGNNCC	1 cut(s)	172
Bpu1102I	GCTNAGC	1 cut(s)	155
BsaBI	GATNNNNATC	1 cut(s)	318
Bse1I	ACTGG	1 cut(s)	181
Bse21I	CCTNAGG	1 cut(s)	146
Bse3DI	GCAATG	1 cut(s)	93
Bse8I	GATNNNNATC	1 cut(s)	318
BseGI	GGATG	1 cut(s)	135
BseJI	GATNNNNATC	1 cut(s)	318
BseMI	GCAATG	1 cut(s)	93
BseMII	CTCAG	1 cut(s)	160
BseNI	ACTGG	1 cut(s)	181
BseRI	GAGGAG	1 cut(s)	22
BseXI	GCAGC	1 cut(s)	183
BseYI	CCCAGC	1 cut(s)	379
BshFI	GGCC	1 cut(s)	227
BsmAI	GTCTC	3 cut(s)	80, 339, 343
BsnI	GGCC	1 cut(s)	227
Bsp143I	GATC	2 cut(s)	170, 313
Bsp1720I	GCTNAGC	1 cut(s)	155
BspANI	GGCC	1 cut(s)	227
BspCNI	CTCAG	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	172
BspPI	GGATC	2 cut(s)	165, 178
BsrDI	GCAATG	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	181
BssMI	GATC	2 cut(s)	170, 313
BstC8I	GCNNGC	2 cut(s)	194, 225
BstDEI	CTNAG	2 cut(s)	146, 155
BstF5I	GGATG	1 cut(s)	135
BstKTI	GATC	2 cut(s)	173, 316
BstMAI	GTCTC	3 cut(s)	80, 339, 343
BstMBI	GATC	2 cut(s)	170, 313
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	183
BstX2I	RGATCY	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	170
Bsu36I	CCTNAGG	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	227
BtsCI	GGATG	1 cut(s)	135
Cac8I	GCNNGC	2 cut(s)	194, 225
CspCI	CAANNNNNGTGG	2 cut(s)	88, 123
CviAII	CATG	1 cut(s)	242
CviJI	RGCY	8 cut(s)	92, 123, 154, 159, 196, 227, 276, 362
CviKI_1	RGCY	8 cut(s)	92, 123, 154, 159, 196, 227, 276, 362
DdeI	CTNAG	2 cut(s)	146, 155
DpnI	GATC	2 cut(s)	172, 315
DpnII	GATC	2 cut(s)	170, 313
Eco81I	CCTNAGG	1 cut(s)	146
FaeI	CATG	1 cut(s)	245
FaiI	YATR	3 cut(s)	243, 252, 261
FatI	CATG	1 cut(s)	241
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	1 cut(s)	197
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	1 cut(s)	197
FspBI	CTAG	1 cut(s)	32
GluI	GCNGC	1 cut(s)	197
GsaI	CCCAGC	1 cut(s)	383
HaeIII	GGCC	1 cut(s)	227
Hin1II	CATG	1 cut(s)	245
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	1 cut(s)	165
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	1 cut(s)	170
Hpy8I	GTNNAC	1 cut(s)	40
HpyAV	CCTTC	1 cut(s)	238
HpyCH4V	TGCA	1 cut(s)	284
HpyF3I	CTNAG	2 cut(s)	146, 155
Hsp92II	CATG	1 cut(s)	245
Kzo9I	GATC	2 cut(s)	170, 313
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	4 cut(s)	133, 194, 209, 344
Lsp1109I	GCAGC	1 cut(s)	183
MaeI	CTAG	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	2 cut(s)	172, 315
MboI	GATC	2 cut(s)	170, 313
MboII	GAAGA	1 cut(s)	385
MfeI	CAATTG	3 cut(s)	102, 279, 341
MflI	RGATCY	1 cut(s)	170
MluCI	AATT	5 cut(s)	102, 256, 279, 341, 353
MlyI	GAGTC	1 cut(s)	174
MmeI	TCCRAC	2 cut(s)	148, 163
MnlI	CCTC	4 cut(s)	28, 155, 211, 260
MseI	TTAA	3 cut(s)	125, 255, 388
MslI	CAYNNNNRTG	1 cut(s)	244
MunI	CAATTG	3 cut(s)	102, 279, 341
NdeII	GATC	2 cut(s)	170, 313
NlaIII	CATG	1 cut(s)	245
NlaIV	GGNNCC	1 cut(s)	172
NmuCI	GTSAC	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	198
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
PspFI	CCCAGC	1 cut(s)	379
PspN4I	GGNNCC	1 cut(s)	172
PsuI	RGATCY	1 cut(s)	170
RseI	CAYNNNNRTG	1 cut(s)	244
SalI	GTCGAC	1 cut(s)	38
SaqAI	TTAA	3 cut(s)	125, 255, 388
SatI	GCNGC	1 cut(s)	197
Sau3AI	GATC	2 cut(s)	170, 313
SchI	GAGTC	1 cut(s)	174
SetI	ASST	8 cut(s)	39, 125, 147, 156, 161, 198, 222, 278
SfcI	CTRYAG	1 cut(s)	81
SmiMI	CAYNNNNRTG	1 cut(s)	244
Sse9I	AATT	5 cut(s)	102, 256, 279, 341, 353
SspMI	CTAG	1 cut(s)	32
TaqI	TCGA	2 cut(s)	39, 163
TasI	AATT	5 cut(s)	102, 256, 279, 341, 353
Tru1I	TTAA	3 cut(s)	125, 255, 388
Tru9I	TTAA	3 cut(s)	125, 255, 388
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	1 cut(s)	196
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	4 cut(s)	42, 175, 220, 258
XmiI	GTMKAC	1 cut(s)	39
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.