Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003660

Physical Location & Seq

Genomic Coordinates Reverse (-)

19839743 .. 19840805

Gene Structure 1063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g17440.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCATCATCTGAGATAACATCGGGGGCATTGGTTACATTGCAAGATTTGCATCCATCTTCCCCATATTTCAAGCAAGGAGCATCGTTACGAGTGACCGGAAAGTTACACGATTACTCTGTAGAGACGGCCATTGCCACAATCGCCCATGGAAGTGAGAGGTTAAAAATCAACACGCAGCACCTCCGGGAGCTCAGCTTTCGAGTTGGATCCATCTACCAGTTCATCGGCGAGCTGCTTATTCAACCGGATAATGAGGCACGTGTGGGAAGGAATGTCGACGGCATTGACCTCAATCTATATCATCAGTCTCTGCAACTGATAAGACAATTTCAGGCCGACCATTTGAAGAAGCCAGCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0000781 GO:0003674 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006139 GO:0006259 GO:0006457 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010521 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0030234 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0042592 GO:0043086 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044092 GO:0044183 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045934 GO:0046483 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051276 GO:0051338 GO:0051348 GO:0051972 GO:0051974 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098687 GO:0098727 GO:0098772 GO:1901360 GO:2000112 GO:2000113 GO:2000278 GO:2000279

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ten1_2

Protein Analysis

122

Amino Acids

13.48

Weight (kDa)

7.02

Isoelectric Point (pI)

28.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56260 AT1G56260
fragaria_vesca	FvH4_6g06960 FvH4_6g06960 FvH4_6g06960
malus_domestica	MD04G1197300.v1.1 MD12G1210100.v1.1
prunus_persica	Prupe.2G221300_v2.0.a1 Prupe.2G221300_v2.0.a1 Prupe.2G221300_v2.0.a1 Prupe.2G221300_v2.0.a1 Prupe.3G209800_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1 Prupe.6G317700_v2.0.a1
pyrus_communis	pycom04g17440 pycom12g19750
rosa_chinensis	RchiOBHm_Chr3g0456501
rosa_laevigata	RLG00000025300
rosa_multiflora	Rmu_sc0002607.1_g000009 Rmu_sc0031879.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422690
rosa_rugosa	Rorug03G0013400 Rorug03G0013400
rosa_samantha	Rh3AG073900 Rh3BG075800 Rh3CG075300 Rh3DG077500
rosa_wichuraiana	Rw3G006340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	279
AclWI	GGATC	2 cut(s)	204, 217
AcoI	YGGCCR	1 cut(s)	129
AcvI	CACGTG	1 cut(s)	263
AflIII	ACRYGT	1 cut(s)	262
AgsI	TTSAA	3 cut(s)	73, 245, 349
AluBI	AGCT	3 cut(s)	193, 198, 235
AluI	AGCT	3 cut(s)	193, 198, 235
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	2 cut(s)	119, 315
AlwI	GGATC	2 cut(s)	204, 217
AlwNI	CAGNNNCTG	1 cut(s)	313
AoxI	GGCC	2 cut(s)	129, 336
ApeKI	GCWGC	2 cut(s)	178, 235
AsuC2I	CCSGG	1 cut(s)	188
BamHI	GGATCC	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	195
BbrPI	CACGTG	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	2 cut(s)	190, 222
BccI	CCATC	2 cut(s)	64, 221
BceAI	ACGGC	2 cut(s)	144, 298
BcnI	CCSGG	1 cut(s)	188
BcoDI	GTCTC	2 cut(s)	119, 315
BfmI	CTRYAG	1 cut(s)	120
BisI	GCNGC	2 cut(s)	179, 236
BlpI	GCTNAGC	1 cut(s)	194
BlsI	GCNGC	2 cut(s)	180, 237
Bme1390I	CCNGG	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	211
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	3 cut(s)	14, 61, 92
Bpu1102I	GCTNAGC	1 cut(s)	194
BpuMI	CCSGG	1 cut(s)	188
BsaAI	YACGTR	1 cut(s)	263
BsaBI	GATNNNNATC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	148
BsaWI	WCCGGW	2 cut(s)	98, 247
Bse1I	ACTGG	1 cut(s)	220
Bse3DI	GCAATG	2 cut(s)	38, 132
Bse8I	GATNNNNATC	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	1 cut(s)	52
BseJI	GATNNNNATC	1 cut(s)	51
BseMI	GCAATG	2 cut(s)	38, 132
BseMII	CTCAG	1 cut(s)	208
BseNI	ACTGG	1 cut(s)	220
BseXI	GCAGC	2 cut(s)	190, 222
BshFI	GGCC	2 cut(s)	131, 338
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	3 cut(s)	99, 187, 248
BsmAI	GTCTC	2 cut(s)	119, 315
BsmBI	CGTCTC	1 cut(s)	119
BsnI	GGCC	2 cut(s)	131, 338
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	1 cut(s)	209
Bsp1720I	GCTNAGC	1 cut(s)	194
Bsp19I	CCATGG	1 cut(s)	148
BspANI	GGCC	2 cut(s)	131, 338
BspCNI	CTCAG	2 cut(s)	4, 207
BspLI	GGNNCC	1 cut(s)	211
BspPI	GGATC	2 cut(s)	204, 217
BsrDI	GCAATG	2 cut(s)	38, 132
BsrI	ACTGG	1 cut(s)	220
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	1 cut(s)	209
BssT1I	CCWWGG	1 cut(s)	148
BstAPI	GCANNNNNTGC	1 cut(s)	49
BstBAI	YACGTR	1 cut(s)	263
BstC8I	GCNNGC	2 cut(s)	233, 357
BstDEI	CTNAG	2 cut(s)	12, 194
BstDSI	CCRYGG	1 cut(s)	148
BstF5I	GGATG	1 cut(s)	52
BstKTI	GATC	1 cut(s)	212
BstMAI	GTCTC	2 cut(s)	119, 315
BstMBI	GATC	1 cut(s)	209
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 143
BstSCI	CCNGG	1 cut(s)	186
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	2 cut(s)	190, 222
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
BsuRI	GGCC	2 cut(s)	131, 338
BtgI	CCRYGG	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	52
Cac8I	GCNNGC	2 cut(s)	233, 357
CaiI	CAGNNNCTG	1 cut(s)	313
CviAII	CATG	1 cut(s)	149
CviJI	RGCY	6 cut(s)	131, 193, 198, 235, 338, 355
CviKI_1	RGCY	6 cut(s)	131, 193, 198, 235, 338, 355
DdeI	CTNAG	2 cut(s)	12, 194
DpnI	GATC	1 cut(s)	211
DpnII	GATC	1 cut(s)	209
EaeI	YGGCCR	1 cut(s)	129
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	195
Eco53kI	GAGCTC	1 cut(s)	193
Eco72I	CACGTG	1 cut(s)	263
EcoICRI	GAGCTC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	148
Esp3I	CGTCTC	1 cut(s)	119
FaeI	CATG	1 cut(s)	152
FaiI	YATR	3 cut(s)	67, 150, 301
FatI	CATG	1 cut(s)	148
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	2 cut(s)	179, 236
FokI	GGATG	1 cut(s)	39
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	2 cut(s)	179, 236
GluI	GCNGC	2 cut(s)	179, 236
HaeIII	GGCC	2 cut(s)	131, 338
HapII	CCGG	3 cut(s)	99, 187, 248
Hin1II	CATG	1 cut(s)	152
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HpaII	CCGG	3 cut(s)	99, 187, 248
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	1 cut(s)	13
Hpy8I	GTNNAC	1 cut(s)	280
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	1 cut(s)	264
HpyCH4IV	ACGT	1 cut(s)	262
HpyCH4V	TGCA	3 cut(s)	43, 52, 316
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 143
HpyF3I	CTNAG	2 cut(s)	12, 194
HpySE526I	ACGT	1 cut(s)	262
Hsp92II	CATG	1 cut(s)	152
Kzo9I	GATC	1 cut(s)	209
LmnI	GCTCC	2 cut(s)	80, 190
LpnPI	CCDG	5 cut(s)	112, 200, 233, 261, 320
Lsp1109I	GCAGC	2 cut(s)	190, 222
LweI	GCATC	3 cut(s)	14, 61, 92
MaeII	ACGT	1 cut(s)	262
MaeIII	GTNAC	4 cut(s)	34, 87, 94, 105
MalI	GATC	1 cut(s)	211
MboI	GATC	1 cut(s)	209
MboII	GAAGA	2 cut(s)	51, 361
MflI	RGATCY	1 cut(s)	209
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	1 cut(s)	329
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	4 cut(s)	153, 194, 250, 302
MseI	TTAA	2 cut(s)	164, 364
MslI	CAYNNNNRTG	1 cut(s)	153
MspI	CCGG	3 cut(s)	99, 187, 248
MspR9I	CCNGG	1 cut(s)	188
MwoI	GCNNNNNNNGC	2 cut(s)	49, 143
NciI	CCSGG	1 cut(s)	188
NcoI	CCATGG	1 cut(s)	148
NdeII	GATC	1 cut(s)	209
NlaIII	CATG	1 cut(s)	152
NlaIV	GGNNCC	1 cut(s)	211
NmuCI	GTSAC	1 cut(s)	94
PfoI	TCCNGGA	1 cut(s)	186
PkrI	GCNGC	2 cut(s)	180, 237
PmaCI	CACGTG	1 cut(s)	263
PmlI	CACGTG	1 cut(s)	263
Ppu21I	YACGTR	1 cut(s)	263
Psp124BI	GAGCTC	1 cut(s)	195
PspCI	CACGTG	1 cut(s)	263
PspN4I	GGNNCC	1 cut(s)	211
PstNI	CAGNNNCTG	1 cut(s)	313
PsuI	RGATCY	1 cut(s)	209
RseI	CAYNNNNRTG	1 cut(s)	153
SacI	GAGCTC	1 cut(s)	195
SalI	GTCGAC	1 cut(s)	278
SaqAI	TTAA	2 cut(s)	164, 364
SatI	GCNGC	2 cut(s)	179, 236
Sau3AI	GATC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	7 cut(s)	164, 186, 195, 200, 237, 265, 294
SfaNI	GCATC	3 cut(s)	14, 61, 92
SfcI	CTRYAG	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	153
Sse9I	AATT	1 cut(s)	329
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	186
StyI	CCWWGG	1 cut(s)	148
TaiI	ACGT	1 cut(s)	265
TaqI	TCGA	2 cut(s)	202, 279
TasI	AATT	1 cut(s)	329
Tru1I	TTAA	2 cut(s)	164, 364
Tru9I	TTAA	2 cut(s)	164, 364
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	2 cut(s)	178, 235
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	1 cut(s)	214
XmiI	GTMKAC	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.