Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007938

Physical Location & Seq

Genomic Coordinates Reverse (-)

21078023 .. 21080423

Gene Structure 2401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G56300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCGTGCGAAGGTGGAGGATCTAACGTCAGATCTAGCTACTACACCATTCTCGGGATTCGTAAAGATGCCTCTGTTTCCGATATCCGCACTGCTTATCGTAAGCTAGCTATGAAATGGCATCCGGATAGATATGCTCGAAATCCTGGAGTCGCCGGAGAAGCTAAACGTCGGTTTCAACAAATCCAGGAAGCCTATTCTGTTTTGAATGATGAGAATAAGAGGTCAATGTACGATGTTGGACTATATGATCCTCATGAAGATGATGACGATGACTTCTGTGATTTCATGCAAGAGATGATCTCAATGATGAACAATGTCAAAGACGCGGGAGAGAGCTTGGAAGACTTGCAACGAATGTTCACGGATATGGTTGGTGGAGATGGCGTGAGCTATGACTGTAACAATAATCCAAAGGGCAACAAAAGACCACGTGTCAATATCTCGAGGAGTAGTGCTGCGATGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0030016 GO:0030017 GO:0030018 GO:0031674 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043292 GO:0044422 GO:0044424 GO:0044444 GO:0044449 GO:0044464 GO:0099080 GO:0099081 GO:0099512

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

156

Amino Acids

17.73

Weight (kDa)

5.43

Isoelectric Point (pI)

57.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	13 - 79	1.6e-24	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56300 AT1G56300
fragaria_vesca	FvH4_6g07140 FvH4_6g07140 FvH4_6g07140 FvH4_6g07140 FvH4_6g07140
malus_domestica	MD04G1195900.v1.1 MD12G1208600.v1.1
prunus_persica	Prupe.6G315800_v2.0.a1 Prupe.6G315800_v2.0.a1 Prupe.6G315800_v2.0.a1
pyrus_communis	pycom04g17320 pycom12g19580
rosa_chinensis	RchiOBHm_Chr3g0456731
rosa_laevigata	RLG00000025280
rosa_multiflora	Rmu_sc0037808.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422500
rosa_rugosa	Rorug03G0015400
rosa_samantha	Rh3AG075900 Rh3BG077800 Rh3CG077600 Rh3DG079500
rosa_wichuraiana	Rw3G006510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	329
AccIII	TCCGGA	1 cut(s)	124
AciI	CCGC	2 cut(s)	88, 329
AclWI	GGATC	2 cut(s)	28, 245
AcvI	CACGTG	1 cut(s)	434
AfaI	GTAC	1 cut(s)	233
AfiI	CCNNNNNNNGG	1 cut(s)	54
AflIII	ACRYGT	1 cut(s)	433
AgsI	TTSAA	2 cut(s)	179, 208
AhdI	GACNNNNNGTC	1 cut(s)	434
AjnI	CCWGG	2 cut(s)	145, 186
AluBI	AGCT	6 cut(s)	39, 106, 110, 164, 339, 393
AluI	AGCT	6 cut(s)	39, 106, 110, 164, 339, 393
AlwI	GGATC	2 cut(s)	28, 245
Ama87I	CYCGRG	2 cut(s)	53, 445
Aor13HI	TCCGGA	1 cut(s)	124
ApeKI	GCWGC	1 cut(s)	458
AsuNHI	GCTAGC	1 cut(s)	106
AvaI	CYCGRG	2 cut(s)	53, 445
BbrPI	CACGTG	1 cut(s)	434
BbsI	GAAGAC	1 cut(s)	351
BbvI	GCAGC	1 cut(s)	445
BccI	CCATC	1 cut(s)	377
BciT130I	CCWGG	2 cut(s)	147, 188
BfaI	CTAG	2 cut(s)	36, 107
BglII	AGATCT	1 cut(s)	32
BisI	GCNGC	1 cut(s)	459
BlsI	GCNGC	1 cut(s)	460
Bme1390I	CCNGG	2 cut(s)	147, 188
BmeRI	GACNNNNNGTC	1 cut(s)	434
BmeT110I	CYCGRG	2 cut(s)	53, 445
BmrFI	CCNGG	2 cut(s)	147, 188
BmsI	GCATC	3 cut(s)	58, 130, 453
BmtI	GCTAGC	1 cut(s)	110
BpiI	GAAGAC	1 cut(s)	351
BplI	GAGNNNNNCTC	2 cut(s)	287, 319
BpmI	CTGGAG	1 cut(s)	168
BsaAI	YACGTR	1 cut(s)	434
BsaWI	WCCGGW	1 cut(s)	124
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
BseAI	TCCGGA	1 cut(s)	124
BseBI	CCWGG	2 cut(s)	147, 188
BseGI	GGATG	1 cut(s)	121
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseRI	GAGGAG	1 cut(s)	463
BseXI	GCAGC	1 cut(s)	445
Bsh1236I	CGCG	1 cut(s)	329
BsiHKCI	CYCGRG	2 cut(s)	53, 445
BsiSI	CCGG	2 cut(s)	125, 156
BslI	CCNNNNNNNGG	1 cut(s)	54
BsoBI	CYCGRG	2 cut(s)	53, 445
Bsp13I	TCCGGA	1 cut(s)	124
Bsp143I	GATC	4 cut(s)	20, 32, 250, 300
BspACI	CCGC	2 cut(s)	88, 329
BspEI	TCCGGA	1 cut(s)	124
BspFNI	CGCG	1 cut(s)	329
BspHI	TCATGA	1 cut(s)	256
BspOI	GCTAGC	1 cut(s)	110
BspPI	GGATC	2 cut(s)	28, 245
BssMI	GATC	4 cut(s)	20, 32, 250, 300
Bst2UI	CCWGG	2 cut(s)	147, 188
Bst4CI	ACNGT	1 cut(s)	401
BstBAI	YACGTR	1 cut(s)	434
BstC8I	GCNNGC	2 cut(s)	7, 108
BstF5I	GGATG	1 cut(s)	121
BstFNI	CGCG	1 cut(s)	329
BstKTI	GATC	4 cut(s)	23, 35, 253, 303
BstMBI	GATC	4 cut(s)	20, 32, 250, 300
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNI	CCWGG	2 cut(s)	147, 188
BstSCI	CCNGG	2 cut(s)	145, 186
BstUI	CGCG	1 cut(s)	329
BstV1I	GCAGC	1 cut(s)	445
BstV2I	GAAGAC	1 cut(s)	351
BstX2I	RGATCY	2 cut(s)	20, 32
BstYI	RGATCY	2 cut(s)	20, 32
BtsCI	GGATG	1 cut(s)	121
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	2 cut(s)	7, 108
CciI	TCATGA	1 cut(s)	256
CseI	GACGC	1 cut(s)	335
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	2 cut(s)	257, 289
CviJI	RGCY	7 cut(s)	39, 106, 110, 164, 194, 339, 393
CviKI_1	RGCY	7 cut(s)	39, 106, 110, 164, 194, 339, 393
CviQI	GTAC	1 cut(s)	232
DpnI	GATC	4 cut(s)	22, 34, 252, 302
DpnII	GATC	4 cut(s)	20, 32, 250, 300
DriI	GACNNNNNGTC	1 cut(s)	434
Eam1105I	GACNNNNNGTC	1 cut(s)	434
Eco32I	GATATC	1 cut(s)	85
Eco72I	CACGTG	1 cut(s)	434
Eco88I	CYCGRG	2 cut(s)	53, 445
EcoRII	CCWGG	2 cut(s)	145, 186
EcoRV	GATATC	1 cut(s)	85
FaeI	CATG	2 cut(s)	260, 292
FaiI	YATR	8 cut(s)	113, 135, 247, 249, 258, 290, 371, 396
FatI	CATG	2 cut(s)	256, 288
FauI	CCCGC	1 cut(s)	322
Fnu4HI	GCNGC	1 cut(s)	459
FokI	GGATG	1 cut(s)	108
Fsp4HI	GCNGC	1 cut(s)	459
FspBI	CTAG	2 cut(s)	36, 107
GluI	GCNGC	1 cut(s)	459
GsuI	CTGGAG	1 cut(s)	168
HapII	CCGG	2 cut(s)	125, 156
HgaI	GACGC	1 cut(s)	335
Hin1II	CATG	2 cut(s)	260, 292
HinfI	GANTC	2 cut(s)	58, 150
HpaII	CCGG	2 cut(s)	125, 156
Hpy166II	GTNNAC	1 cut(s)	363
Hpy188I	TCNGA	2 cut(s)	32, 82
Hpy188III	TCNNGA	4 cut(s)	55, 125, 257, 445
Hpy8I	GTNNAC	1 cut(s)	363
Hpy99I	CGWCG	1 cut(s)	174
HpyAV	CCTTC	1 cut(s)	5
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4IV	ACGT	3 cut(s)	27, 169, 433
HpyCH4V	TGCA	2 cut(s)	292, 352
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpySE526I	ACGT	3 cut(s)	27, 169, 433
Hsp92II	CATG	2 cut(s)	260, 292
Kpn2I	TCCGGA	1 cut(s)	124
Kzo9I	GATC	4 cut(s)	20, 32, 250, 300
LpnPI	CCDG	6 cut(s)	132, 138, 159, 169, 173, 200
Lsp1109I	GCAGC	1 cut(s)	445
LweI	GCATC	3 cut(s)	58, 130, 453
MaeI	CTAG	2 cut(s)	36, 107
MaeII	ACGT	3 cut(s)	27, 169, 433
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	4 cut(s)	22, 34, 252, 302
MboI	GATC	4 cut(s)	20, 32, 250, 300
MboII	GAAGA	2 cut(s)	272, 356
MflI	RGATCY	2 cut(s)	20, 32
MlyI	GAGTC	1 cut(s)	159
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	5 cut(s)	11, 82, 216, 264, 441
MroI	TCCGGA	1 cut(s)	124
MseI	TTAA	1 cut(s)	469
MslI	CAYNNNNRTG	2 cut(s)	261, 368
MspI	CCGG	2 cut(s)	125, 156
MspR9I	CCNGG	2 cut(s)	147, 188
MvaI	CCWGG	2 cut(s)	147, 188
MvnI	CGCG	1 cut(s)	329
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeII	GATC	4 cut(s)	20, 32, 250, 300
NheI	GCTAGC	1 cut(s)	106
NlaIII	CATG	2 cut(s)	260, 292
PaeR7I	CTCGAG	1 cut(s)	445
PagI	TCATGA	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	58
PfoI	TCCNGGA	2 cut(s)	145, 186
PkrI	GCNGC	1 cut(s)	460
PleI	GAGTC	1 cut(s)	158
PmaCI	CACGTG	1 cut(s)	434
PmlI	CACGTG	1 cut(s)	434
PpsI	GAGTC	1 cut(s)	158
Ppu21I	YACGTR	1 cut(s)	434
Psp6I	CCWGG	2 cut(s)	145, 186
PspCI	CACGTG	1 cut(s)	434
PspGI	CCWGG	2 cut(s)	145, 186
PsuI	RGATCY	2 cut(s)	20, 32
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
RseI	CAYNNNNRTG	2 cut(s)	261, 368
SaqAI	TTAA	1 cut(s)	469
SatI	GCNGC	1 cut(s)	459
Sau3AI	GATC	4 cut(s)	20, 32, 250, 300
SchI	GAGTC	1 cut(s)	159
ScrFI	CCNGG	2 cut(s)	147, 188
SfaNI	GCATC	3 cut(s)	58, 130, 453
Sfr274I	CTCGAG	1 cut(s)	445
SlaI	CTCGAG	1 cut(s)	445
SmiMI	CAYNNNNRTG	2 cut(s)	261, 368
SmlI	CTYRAG	1 cut(s)	445
SmoI	CTYRAG	1 cut(s)	445
SsiI	CCGC	2 cut(s)	88, 329
SspMI	CTAG	2 cut(s)	36, 107
StyD4I	CCNGG	2 cut(s)	145, 186
TaaI	ACNGT	1 cut(s)	401
TaiI	ACGT	3 cut(s)	30, 172, 436
TaqI	TCGA	2 cut(s)	139, 446
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	1 cut(s)	469
Tru9I	TTAA	1 cut(s)	469
TscAI	CASTG	1 cut(s)	97
TseI	GCWGC	1 cut(s)	458
TspDTI	ATGAA	4 cut(s)	128, 273, 277, 326
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	1 cut(s)	97
XhoI	CTCGAG	1 cut(s)	445
XspI	CTAG	2 cut(s)	36, 107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.