Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037808.1

Orthogroup ID

OG0007938

Physical Location & Seq

Genomic Coordinates Reverse (-)

2317 .. 3031

Gene Structure 715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037808.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atggacagggatggaggatccaacggcggatcttgctactactccgtcctcgggatccgcaaggatgcctccttctctgatgtccgcaccgcttaccgcaaactcgccatgaaatggcatccggataggtgggcccggaaccagaacccgtcggtggccggagaagcgaatcggcggtttcagcaaatccaagaagcctatacggttctctcggatcaggggaagaggtcaatgtacgacgccggggtctacgacccgcttgaagaagaagacgaaggggacagttttgaagatctccagaggatgtttgtggaaatggttggtggagatgggagccacggaatggggtttgacattggcagtacggatccaacggccgcaaagaaggcacgtgtcggttcgtctagaagcaactctaacgccgccaagcgcggcacgtcgcggttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0030016 GO:0030017 GO:0030018 GO:0031674 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043292 GO:0044422 GO:0044424 GO:0044444 GO:0044449 GO:0044464 GO:0099080 GO:0099081 GO:0099512

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

149

Amino Acids

16.48

Weight (kDa)

6.12

Isoelectric Point (pI)

47.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56300 AT1G56300
fragaria_vesca	FvH4_6g07140 FvH4_6g07140 FvH4_6g07140 FvH4_6g07140 FvH4_6g07140
malus_domestica	MD04G1195900.v1.1 MD12G1208600.v1.1
prunus_persica	Prupe.6G315800_v2.0.a1 Prupe.6G315800_v2.0.a1 Prupe.6G315800_v2.0.a1
pyrus_communis	pycom04g17320 pycom12g19580
rosa_chinensis	RchiOBHm_Chr3g0456731
rosa_laevigata	RLG00000025280
rosa_multiflora	Rmu_sc0037808.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422500
rosa_rugosa	Rorug03G0015400
rosa_samantha	Rh3AG075900 Rh3BG077800 Rh3CG077600 Rh3DG079500
rosa_wichuraiana	Rw3G006510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	245
AccB7I	CCANNNNNTGG	2 cut(s)	114, 343
AccI	GTMKAC	1 cut(s)	249
AccII	CGCG	2 cut(s)	432, 442
AccIII	TCCGGA	1 cut(s)	121
AclWI	GGATC	8 cut(s)	12, 25, 37, 49, 62, 222, 362, 375
AcoI	YGGCCR	2 cut(s)	156, 375
AcvI	CACGTG	1 cut(s)	392
AcyI	GRCGYC	1 cut(s)	240
AfaI	GTAC	2 cut(s)	236, 364
AfiI	CCNNNNNNNGG	4 cut(s)	51, 114, 154, 343
AflIII	ACRYGT	1 cut(s)	391
AgsI	TTSAA	2 cut(s)	263, 290
AjiI	CACGTC	1 cut(s)	438
AlwI	GGATC	8 cut(s)	12, 25, 37, 49, 62, 222, 362, 375
Ama87I	CYCGRG	1 cut(s)	50
Aor13HI	TCCGGA	1 cut(s)	121
AoxI	GGCC	3 cut(s)	132, 156, 375
ApaI	GGGCCC	1 cut(s)	136
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	2 cut(s)	132, 133
AsuC2I	CCSGG	2 cut(s)	136, 244
AvaI	CYCGRG	1 cut(s)	50
BaeGI	GKGCMC	1 cut(s)	136
BamHI	GGATCC	3 cut(s)	17, 54, 367
BanII	GRGCYC	1 cut(s)	136
BbrPI	CACGTG	1 cut(s)	392
BbsI	GAAGAC	1 cut(s)	276
BccI	CCATC	2 cut(s)	5, 323
BceAI	ACGGC	2 cut(s)	40, 390
BcnI	CCSGG	2 cut(s)	136, 244
BfaI	CTAG	2 cut(s)	405, 448
BglII	AGATCT	1 cut(s)	292
BisI	GCNGC	3 cut(s)	378, 423, 433
BlsI	GCNGC	3 cut(s)	379, 424, 434
Bme1390I	CCNGG	2 cut(s)	136, 244
BmeT110I	CYCGRG	1 cut(s)	50
BmgBI	CACGTC	1 cut(s)	438
BmgT120I	GGNCC	2 cut(s)	132, 133
BmiI	GGNNCC	6 cut(s)	19, 56, 134, 140, 335, 369
BmrFI	CCNGG	2 cut(s)	136, 244
BmsI	GCATC	2 cut(s)	55, 127
BpiI	GAAGAC	1 cut(s)	276
BpmI	CTGGAG	1 cut(s)	281
BpuMI	CCSGG	2 cut(s)	136, 244
BsaAI	YACGTR	1 cut(s)	392
BsaHI	GRCGYC	1 cut(s)	240
BsaJI	CCNNGG	3 cut(s)	49, 243, 337
BsaWI	WCCGGW	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 114, 154, 343
BseAI	TCCGGA	1 cut(s)	121
BseDI	CCNNGG	3 cut(s)	49, 243, 337
BseGI	GGATG	4 cut(s)	16, 70, 118, 309
BseLI	CCNNNNNNNGG	4 cut(s)	51, 114, 154, 343
BseSI	GKGCMC	1 cut(s)	136
BseX3I	CGGCCG	1 cut(s)	375
Bsh1236I	CGCG	2 cut(s)	432, 442
Bsh1285I	CGRYCG	1 cut(s)	378
BshFI	GGCC	3 cut(s)	134, 158, 377
BsiEI	CGRYCG	1 cut(s)	378
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	4 cut(s)	122, 136, 159, 243
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	4 cut(s)	51, 114, 154, 343
BsmFI	GGGAC	1 cut(s)	293
BsnI	GGCC	3 cut(s)	134, 158, 377
BsoBI	CYCGRG	1 cut(s)	50
Bsp120I	GGGCCC	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp13I	TCCGGA	1 cut(s)	121
Bsp143I	GATC	6 cut(s)	17, 29, 54, 214, 292, 367
BspANI	GGCC	3 cut(s)	134, 158, 377
BspEI	TCCGGA	1 cut(s)	121
BspFNI	CGCG	2 cut(s)	432, 442
BspLI	GGNNCC	6 cut(s)	19, 56, 134, 140, 335, 369
BspPI	GGATC	8 cut(s)	12, 25, 37, 49, 62, 222, 362, 375
BssECI	CCNNGG	3 cut(s)	49, 243, 337
BssMI	GATC	6 cut(s)	17, 29, 54, 214, 292, 367
BssNI	GRCGYC	1 cut(s)	240
Bst4CI	ACNGT	2 cut(s)	205, 284
Bst6I	CTCTTC	1 cut(s)	218
BstACI	GRCGYC	1 cut(s)	240
BstBAI	YACGTR	1 cut(s)	392
BstDSI	CCRYGG	1 cut(s)	337
BstF5I	GGATG	4 cut(s)	16, 70, 118, 309
BstFNI	CGCG	2 cut(s)	432, 442
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	6 cut(s)	20, 32, 57, 217, 295, 370
BstMBI	GATC	6 cut(s)	17, 29, 54, 214, 292, 367
BstMCI	CGRYCG	1 cut(s)	378
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 164, 181, 386
BstSCI	CCNGG	2 cut(s)	134, 242
BstSLI	GKGCMC	1 cut(s)	136
BstUI	CGCG	2 cut(s)	432, 442
BstV2I	GAAGAC	1 cut(s)	276
BstX2I	RGATCY	5 cut(s)	17, 29, 54, 292, 367
BstYI	RGATCY	5 cut(s)	17, 29, 54, 292, 367
BstZI	CGGCCG	1 cut(s)	375
BsuRI	GGCC	3 cut(s)	134, 158, 377
BtgI	CCRYGG	1 cut(s)	337
BtrI	CACGTC	1 cut(s)	438
BtsCI	GGATG	4 cut(s)	16, 70, 118, 309
CfoI	GCGC	1 cut(s)	432
Cfr13I	GGNCC	2 cut(s)	132, 133
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	2 cut(s)	235, 363
CviAII	CATG	1 cut(s)	109
CviJI	RGCY	5 cut(s)	134, 158, 197, 336, 377
CviKI_1	RGCY	5 cut(s)	134, 158, 197, 336, 377
CviQI	GTAC	2 cut(s)	235, 363
DpnI	GATC	6 cut(s)	19, 31, 56, 216, 294, 369
DpnII	GATC	6 cut(s)	17, 29, 54, 214, 292, 367
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
EaeI	YGGCCR	2 cut(s)	156, 375
EagI	CGGCCG	1 cut(s)	375
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
EciI	GGCGGA	1 cut(s)	42
EclXI	CGGCCG	1 cut(s)	375
Eco24I	GRGCYC	1 cut(s)	136
Eco52I	CGGCCG	1 cut(s)	375
Eco72I	CACGTG	1 cut(s)	392
Eco88I	CYCGRG	1 cut(s)	50
EcoT38I	GRGCYC	1 cut(s)	136
FaeI	CATG	1 cut(s)	112
FaiI	YATR	2 cut(s)	110, 201
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	1 cut(s)	108
FauI	CCCGC	1 cut(s)	264
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	3 cut(s)	378, 423, 433
FokI	GGATG	4 cut(s)	23, 77, 105, 316
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	3 cut(s)	378, 423, 433
FspBI	CTAG	2 cut(s)	405, 448
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	3 cut(s)	378, 423, 433
GsuI	CTGGAG	1 cut(s)	281
HaeIII	GGCC	3 cut(s)	134, 158, 377
HapII	CCGG	4 cut(s)	122, 136, 159, 243
HgaI	GACGC	1 cut(s)	248
HhaI	GCGC	1 cut(s)	432
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	1 cut(s)	112
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HinfI	GANTC	1 cut(s)	169
HpaII	CCGG	4 cut(s)	122, 136, 159, 243
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	2 cut(s)	79, 214
Hpy188III	TCNNGA	4 cut(s)	52, 122, 298, 405
Hpy8I	GTNNAC	1 cut(s)	250
Hpy99I	CGWCG	3 cut(s)	154, 242, 442
HpyAV	CCTTC	3 cut(s)	82, 269, 379
HpyCH4III	ACNGT	2 cut(s)	205, 284
HpyCH4IV	ACGT	2 cut(s)	391, 437
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 164, 181, 386
HpySE526I	ACGT	2 cut(s)	391, 437
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	1 cut(s)	112
HspAI	GCGC	1 cut(s)	430
Kpn2I	TCCGGA	1 cut(s)	121
Kzo9I	GATC	6 cut(s)	17, 29, 54, 214, 292, 367
LmnI	GCTCC	1 cut(s)	333
LpnPI	CCDG	7 cut(s)	135, 149, 155, 172, 203, 256, 311
LweI	GCATC	2 cut(s)	55, 127
MaeI	CTAG	2 cut(s)	405, 448
MaeII	ACGT	2 cut(s)	391, 437
MalI	GATC	6 cut(s)	19, 31, 56, 216, 294, 369
MboI	GATC	6 cut(s)	17, 29, 54, 214, 292, 367
MboII	GAAGA	5 cut(s)	235, 275, 278, 281, 302
MflI	RGATCY	5 cut(s)	17, 29, 54, 292, 367
MhlI	GDGCHC	1 cut(s)	136
MmeI	TCCRAC	2 cut(s)	45, 395
MnlI	CCTC	5 cut(s)	8, 59, 79, 219, 294
MroI	TCCGGA	1 cut(s)	121
MspI	CCGG	4 cut(s)	122, 136, 159, 243
MspR9I	CCNGG	2 cut(s)	136, 244
MvnI	CGCG	2 cut(s)	432, 442
MwoI	GCNNNNNNNGC	4 cut(s)	33, 164, 181, 386
NciI	CCSGG	2 cut(s)	136, 244
NdeII	GATC	6 cut(s)	17, 29, 54, 214, 292, 367
NlaIII	CATG	1 cut(s)	112
NlaIV	GGNNCC	6 cut(s)	19, 56, 134, 140, 335, 369
PfeI	GAWTC	1 cut(s)	169
PflMI	CCANNNNNTGG	2 cut(s)	114, 343
PkrI	GCNGC	3 cut(s)	379, 424, 434
PmaCI	CACGTG	1 cut(s)	392
PmlI	CACGTG	1 cut(s)	392
Ppu21I	YACGTR	1 cut(s)	392
PspCI	CACGTG	1 cut(s)	392
PspN4I	GGNNCC	6 cut(s)	19, 56, 134, 140, 335, 369
PspOMI	GGGCCC	1 cut(s)	132
PspPI	GGNCC	2 cut(s)	132, 133
PsuI	RGATCY	5 cut(s)	17, 29, 54, 292, 367
RsaI	GTAC	2 cut(s)	236, 364
RsaNI	GTAC	2 cut(s)	235, 363
SatI	GCNGC	3 cut(s)	378, 423, 433
Sau3AI	GATC	6 cut(s)	17, 29, 54, 214, 292, 367
Sau96I	GGNCC	2 cut(s)	132, 133
ScrFI	CCNGG	2 cut(s)	136, 244
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	4 cut(s)	131, 230, 394, 440
SfaNI	GCATC	2 cut(s)	55, 127
SspMI	CTAG	2 cut(s)	405, 448
StyD4I	CCNGG	2 cut(s)	134, 242
TaaI	ACNGT	2 cut(s)	205, 284
TaiI	ACGT	2 cut(s)	394, 440
TauI	GCSGC	3 cut(s)	380, 425, 435
TfiI	GAWTC	1 cut(s)	169
TspDTI	ATGAA	1 cut(s)	125
TspGWI	ACGGA	3 cut(s)	34, 354, 380
Van91I	CCANNNNNTGG	2 cut(s)	114, 343
XbaI	TCTAGA	1 cut(s)	404
XmiI	GTMKAC	1 cut(s)	249
XspI	CTAG	2 cut(s)	405, 448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.