Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0007938

Physical Location & Seq

Genomic Coordinates Forward (+)

28795468 .. 28797069

Gene Structure 1602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1208600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGACAGAGAAGGAGGATCCAACGGCGGATCTTCCTACTACGCCGTCCTCGGGATCCGCAGGGACGCCTCCTTCTCTGATATCCGCACAGCTTACCGCAAGCTCGCTCTGAAATGGCATCCGGATAGGGCGCGAAGTCAAACGGCGGCGGGAGAAGCCAAGCGGCGGTTTCAGCAAATCCAAGAGGCTTACTCCGTTCTCTCGGATCAGGCGAAGCGGTCGATGTACGACGCCGGGCTCTACGACCCCCTCGAAGAAGAAGACCAGGAATTTTGCAATTTCATGGGTGAAATGCTGTCCATGATGAACAATGTGAAAGACGAGGGGGACAGTTTGGAAGATCTCCAGAGGATGTTCAACGACATGGTCGGCGGAGACGGGATGATGGGATTCGACTTCGGCGACATGAATCCGACGGCGAACAAGAAGCCACGTGTTAGTGCGTCGAGAGGTGCCAAGTCTCGCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0030016 GO:0030017 GO:0030018 GO:0031674 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043292 GO:0044422 GO:0044424 GO:0044444 GO:0044449 GO:0044464 GO:0099080 GO:0099081 GO:0099512

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

157

Amino Acids

17.54

Weight (kDa)

5.27

Isoelectric Point (pI)

47.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	12 - 77	1.4e-24	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56300 AT1G56300
fragaria_vesca	FvH4_6g07140 FvH4_6g07140 FvH4_6g07140 FvH4_6g07140 FvH4_6g07140
malus_domestica	MD04G1195900.v1.1 MD12G1208600.v1.1
prunus_persica	Prupe.6G315800_v2.0.a1 Prupe.6G315800_v2.0.a1 Prupe.6G315800_v2.0.a1
pyrus_communis	pycom04g17320 pycom12g19580
rosa_chinensis	RchiOBHm_Chr3g0456731
rosa_laevigata	RLG00000025280
rosa_multiflora	Rmu_sc0037808.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422500
rosa_rugosa	Rorug03G0015400
rosa_samantha	Rh3AG075900 Rh3BG077800 Rh3CG077600 Rh3DG079500
rosa_wichuraiana	Rw3G006510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	452
AccII	CGCG	1 cut(s)	133
AccIII	TCCGGA	1 cut(s)	121
AclWI	GGATC	6 cut(s)	12, 25, 37, 49, 62, 213
AcsI	RAATTY	1 cut(s)	269
AcvI	CACGTG	1 cut(s)	434
AcyI	GRCGYC	2 cut(s)	66, 231
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	2 cut(s)	51, 165
AflIII	ACRYGT	1 cut(s)	433
AgsI	TTSAA	1 cut(s)	358
AjnI	CCWGG	1 cut(s)	264
AluBI	AGCT	2 cut(s)	92, 103
AluI	AGCT	2 cut(s)	92, 103
Alw26I	GTCTC	2 cut(s)	369, 465
AlwI	GGATC	6 cut(s)	12, 25, 37, 49, 62, 213
Ama87I	CYCGRG	1 cut(s)	50
Aor13HI	TCCGGA	1 cut(s)	121
ApeKI	GCWGC	1 cut(s)	465
ApoI	RAATTY	1 cut(s)	269
AspLEI	GCGC	1 cut(s)	133
AsuC2I	CCSGG	1 cut(s)	235
AsuHPI	GGTGA	1 cut(s)	299
AvaI	CYCGRG	1 cut(s)	50
BamHI	GGATCC	2 cut(s)	17, 54
BanI	GGYRCC	1 cut(s)	452
BanII	GRGCYC	1 cut(s)	240
BbrPI	CACGTG	1 cut(s)	434
BbsI	GAAGAC	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	452
BccI	CCATC	1 cut(s)	379
BceAI	ACGGC	4 cut(s)	29, 40, 159, 432
BciT130I	CCWGG	1 cut(s)	266
BcnI	CCSGG	1 cut(s)	235
BcoDI	GTCTC	2 cut(s)	369, 465
BfaI	CTAG	1 cut(s)	469
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	3 cut(s)	147, 164, 466
BlsI	GCNGC	3 cut(s)	148, 165, 467
Bme1390I	CCNGG	2 cut(s)	235, 266
BmeT110I	CYCGRG	1 cut(s)	50
BmiI	GGNNCC	3 cut(s)	19, 56, 454
BmrFI	CCNGG	2 cut(s)	235, 266
BmsI	GCATC	1 cut(s)	127
BpiI	GAAGAC	1 cut(s)	267
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
BpmI	CTGGAG	1 cut(s)	329
BpuMI	CCSGG	1 cut(s)	235
BsaAI	YACGTR	1 cut(s)	434
BsaHI	GRCGYC	2 cut(s)	66, 231
BsaJI	CCNNGG	1 cut(s)	49
BsaWI	WCCGGW	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 165
BseAI	TCCGGA	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	1 cut(s)	49
BseGI	GGATG	3 cut(s)	118, 357, 387
BseLI	CCNNNNNNNGG	2 cut(s)	51, 165
BseXI	GCAGC	1 cut(s)	452
Bsh1236I	CGCG	1 cut(s)	133
Bsh1285I	CGRYCG	1 cut(s)	221
BshNI	GGYRCC	1 cut(s)	452
BsiEI	CGRYCG	1 cut(s)	221
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	2 cut(s)	122, 234
BslFI	GGGAC	2 cut(s)	77, 341
BslI	CCNNNNNNNGG	2 cut(s)	51, 165
BsmAI	GTCTC	2 cut(s)	369, 465
BsmBI	CGTCTC	1 cut(s)	369
BsmFI	GGGAC	2 cut(s)	77, 341
BsoBI	CYCGRG	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp13I	TCCGGA	1 cut(s)	121
Bsp143I	GATC	5 cut(s)	17, 29, 54, 205, 340
BspEI	TCCGGA	1 cut(s)	121
BspFNI	CGCG	1 cut(s)	133
BspLI	GGNNCC	3 cut(s)	19, 56, 454
BspPI	GGATC	6 cut(s)	12, 25, 37, 49, 62, 213
BspT107I	GGYRCC	1 cut(s)	452
BssECI	CCNNGG	1 cut(s)	49
BssMI	GATC	5 cut(s)	17, 29, 54, 205, 340
BssNI	GRCGYC	2 cut(s)	66, 231
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	1 cut(s)	332
BstACI	GRCGYC	2 cut(s)	66, 231
BstBAI	YACGTR	1 cut(s)	434
BstC8I	GCNNGC	2 cut(s)	101, 105
BstF5I	GGATG	3 cut(s)	118, 357, 387
BstFNI	CGCG	1 cut(s)	133
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	5 cut(s)	20, 32, 57, 208, 343
BstMAI	GTCTC	2 cut(s)	369, 465
BstMBI	GATC	5 cut(s)	17, 29, 54, 205, 340
BstMCI	CGRYCG	1 cut(s)	221
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 172
BstNI	CCWGG	1 cut(s)	266
BstSCI	CCNGG	2 cut(s)	233, 264
BstUI	CGCG	1 cut(s)	133
BstV1I	GCAGC	1 cut(s)	452
BstV2I	GAAGAC	1 cut(s)	267
BstX2I	RGATCY	4 cut(s)	17, 29, 54, 340
BstYI	RGATCY	4 cut(s)	17, 29, 54, 340
BtsCI	GGATG	3 cut(s)	118, 357, 387
Cac8I	GCNNGC	2 cut(s)	101, 105
CfoI	GCGC	1 cut(s)	133
CseI	GACGC	3 cut(s)	74, 239, 432
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	4 cut(s)	283, 301, 364, 406
CviJI	RGCY	6 cut(s)	92, 103, 158, 188, 238, 430
CviKI_1	RGCY	6 cut(s)	92, 103, 158, 188, 238, 430
CviQI	GTAC	1 cut(s)	226
DpnI	GATC	5 cut(s)	19, 31, 56, 207, 342
DpnII	GATC	5 cut(s)	17, 29, 54, 205, 340
EciI	GGCGGA	2 cut(s)	42, 387
Eco24I	GRGCYC	1 cut(s)	240
Eco32I	GATATC	1 cut(s)	82
Eco72I	CACGTG	1 cut(s)	434
Eco88I	CYCGRG	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	264
EcoRV	GATATC	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	240
Esp3I	CGTCTC	1 cut(s)	369
FaeI	CATG	4 cut(s)	286, 304, 367, 409
FaiI	YATR	4 cut(s)	284, 302, 365, 407
FaqI	GGGAC	2 cut(s)	77, 341
FatI	CATG	4 cut(s)	282, 300, 363, 405
FauI	CCCGC	1 cut(s)	142
Fnu4HI	GCNGC	3 cut(s)	147, 164, 466
FokI	GGATG	3 cut(s)	105, 364, 394
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	3 cut(s)	147, 164, 466
FspBI	CTAG	1 cut(s)	469
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	3 cut(s)	147, 164, 466
GsuI	CTGGAG	1 cut(s)	329
HapII	CCGG	2 cut(s)	122, 234
HgaI	GACGC	3 cut(s)	74, 239, 432
HhaI	GCGC	1 cut(s)	133
Hin1I	GRCGYC	2 cut(s)	66, 231
Hin1II	CATG	4 cut(s)	286, 304, 367, 409
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HinfI	GANTC	2 cut(s)	390, 409
HpaII	CCGG	2 cut(s)	122, 234
HphI	GGTGA	1 cut(s)	299
Hpy188I	TCNGA	4 cut(s)	79, 111, 205, 414
Hpy188III	TCNNGA	4 cut(s)	52, 122, 346, 447
Hpy99I	CGWCG	3 cut(s)	233, 418, 448
HpyAV	CCTTC	2 cut(s)	5, 82
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4IV	ACGT	1 cut(s)	433
HpyCH4V	TGCA	1 cut(s)	276
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 172
HpySE526I	ACGT	1 cut(s)	433
Hsp92I	GRCGYC	2 cut(s)	66, 231
Hsp92II	CATG	4 cut(s)	286, 304, 367, 409
HspAI	GCGC	1 cut(s)	131
Kpn2I	TCCGGA	1 cut(s)	121
Kzo9I	GATC	5 cut(s)	17, 29, 54, 205, 340
LpnPI	CCDG	7 cut(s)	46, 135, 194, 247, 251, 278, 359
Lsp1109I	GCAGC	1 cut(s)	452
LweI	GCATC	1 cut(s)	127
MaeI	CTAG	1 cut(s)	469
MaeII	ACGT	1 cut(s)	433
MalI	GATC	5 cut(s)	19, 31, 56, 207, 342
MboI	GATC	5 cut(s)	17, 29, 54, 205, 340
MboII	GAAGA	5 cut(s)	24, 266, 269, 272, 350
MflI	RGATCY	4 cut(s)	17, 29, 54, 340
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	2 cut(s)	269, 277
MmeI	TCCRAC	2 cut(s)	45, 437
MnlI	CCTC	8 cut(s)	8, 59, 79, 178, 260, 316, 342, 443
MroI	TCCGGA	1 cut(s)	121
MspI	CCGG	2 cut(s)	122, 234
MspR9I	CCNGG	2 cut(s)	235, 266
MvaI	CCWGG	1 cut(s)	266
MvnI	CGCG	1 cut(s)	133
MwoI	GCNNNNNNNGC	2 cut(s)	155, 172
NciI	CCSGG	1 cut(s)	235
NdeII	GATC	5 cut(s)	17, 29, 54, 205, 340
NlaIII	CATG	4 cut(s)	286, 304, 367, 409
NlaIV	GGNNCC	3 cut(s)	19, 56, 454
PcsI	WCGNNNNNNNCGW	3 cut(s)	209, 249, 399
PfeI	GAWTC	2 cut(s)	390, 409
PflFI	GACNNNGTC	1 cut(s)	365
PkrI	GCNGC	3 cut(s)	148, 165, 467
PmaCI	CACGTG	1 cut(s)	434
PmlI	CACGTG	1 cut(s)	434
Ppu21I	YACGTR	1 cut(s)	434
Psp6I	CCWGG	1 cut(s)	264
PspCI	CACGTG	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	3 cut(s)	19, 56, 454
PsuI	RGATCY	4 cut(s)	17, 29, 54, 340
PsyI	GACNNNGTC	1 cut(s)	365
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
SatI	GCNGC	3 cut(s)	147, 164, 466
Sau3AI	GATC	5 cut(s)	17, 29, 54, 205, 340
ScrFI	CCNGG	2 cut(s)	235, 266
SduI	GDGCHC	1 cut(s)	240
SetI	ASST	4 cut(s)	94, 105, 436, 454
SfaNI	GCATC	1 cut(s)	127
Sse9I	AATT	2 cut(s)	269, 277
SspMI	CTAG	1 cut(s)	469
StyD4I	CCNGG	2 cut(s)	233, 264
TaaI	ACNGT	1 cut(s)	332
TaiI	ACGT	1 cut(s)	436
TaqI	TCGA	4 cut(s)	221, 252, 393, 446
TasI	AATT	2 cut(s)	269, 277
TauI	GCSGC	2 cut(s)	149, 166
TfiI	GAWTC	2 cut(s)	390, 409
TseI	GCWGC	1 cut(s)	465
TspDTI	ATGAA	3 cut(s)	271, 320, 422
TspGWI	ACGGA	1 cut(s)	184
Tth111I	GACNNNGTC	1 cut(s)	365
XapI	RAATTY	1 cut(s)	269
XspI	CTAG	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.