Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0007938

Physical Location & Seq

Genomic Coordinates Forward (+)

19746075 .. 19747436

Gene Structure 1362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g17320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGATAAGGAAGGAGGATCCAACGGCGGATCTTCCTACTACGCTGTCCTTGGGATTCGCAGGGACGCCTCCTTCTCTGATATCCGCGCCGCCTATCGCAAGCTCGCTCTGAAATGGCATCCGGATAGGGCGCGAAACCAGACGGCGGCGGGAGAAGCCAACCGGCGGTTTCAGCAAATCCAAGAGGCCTACTCCGATCATACGAAGCGATCAATGTACGACGCCGGGTTCTACGACCCCCTTGAAGAGGAAGACCAGGAATTTTGCGATTTCATGGACGAAATGCTGTCCATGATGAACAATGTGAAAGACGAGGGGGACATTTTCGAAGATCTCCAGGGGATGTTCAACGATATGGTCGGTGGATATGGGATGATGGGATTCGACTTCAGCAACATGAATCCAACGGCGAACAAGAAGCAACGTGTCGGCTCTTCGAGAGGTAACGCTAGCACAGCCAAGCGCAGCACGTCTCGCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0030016 GO:0030017 GO:0030018 GO:0031674 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043292 GO:0044422 GO:0044424 GO:0044444 GO:0044449 GO:0044464 GO:0099080 GO:0099081 GO:0099512

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

161

Amino Acids

18.1

Weight (kDa)

5.24

Isoelectric Point (pI)

50.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	12 - 74	1.9e-19	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56300 AT1G56300
fragaria_vesca	FvH4_6g07140 FvH4_6g07140 FvH4_6g07140 FvH4_6g07140 FvH4_6g07140
malus_domestica	MD04G1195900.v1.1 MD12G1208600.v1.1
prunus_persica	Prupe.6G315800_v2.0.a1 Prupe.6G315800_v2.0.a1 Prupe.6G315800_v2.0.a1
pyrus_communis	pycom04g17320 pycom12g19580
rosa_chinensis	RchiOBHm_Chr3g0456731
rosa_laevigata	RLG00000025280
rosa_multiflora	Rmu_sc0037808.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422500
rosa_rugosa	Rorug03G0015400
rosa_samantha	Rh3AG075900 Rh3BG077800 Rh3CG077600 Rh3DG079500
rosa_wichuraiana	Rw3G006510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	87, 133
AccIII	TCCGGA	1 cut(s)	121
AciI	CCGC	6 cut(s)	27, 85, 90, 146, 149, 166
AclWI	GGATC	3 cut(s)	12, 25, 37
AcsI	RAATTY	1 cut(s)	260
AcuI	CTGAAG	1 cut(s)	373
AcyI	GRCGYC	2 cut(s)	66, 222
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	3 cut(s)	145, 165, 247
AflIII	ACRYGT	1 cut(s)	424
AgsI	TTSAA	2 cut(s)	245, 349
AjiI	CACGTC	1 cut(s)	471
AjnI	CCWGG	2 cut(s)	255, 336
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
Alw26I	GTCTC	1 cut(s)	477
AlwI	GGATC	3 cut(s)	12, 25, 37
Aor13HI	TCCGGA	1 cut(s)	121
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	2 cut(s)	465, 477
ApoI	RAATTY	1 cut(s)	260
AspLEI	GCGC	3 cut(s)	89, 133, 465
AsuC2I	CCSGG	1 cut(s)	226
AsuII	TTCGAA	1 cut(s)	327
AsuNHI	GCTAGC	1 cut(s)	449
BamHI	GGATCC	1 cut(s)	17
BbsI	GAAGAC	1 cut(s)	258
BbvI	GCAGC	2 cut(s)	464, 477
BccI	CCATC	1 cut(s)	370
BceAI	ACGGC	3 cut(s)	40, 159, 423
BciT130I	CCWGG	2 cut(s)	257, 338
BcnI	CCSGG	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	477
BfaI	CTAG	2 cut(s)	450, 481
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	4 cut(s)	90, 147, 466, 478
BlsI	GCNGC	4 cut(s)	91, 148, 467, 479
Bme1390I	CCNGG	3 cut(s)	226, 257, 338
BmgBI	CACGTC	1 cut(s)	471
BmiI	GGNNCC	1 cut(s)	19
BmrFI	CCNGG	3 cut(s)	226, 257, 338
BmsI	GCATC	1 cut(s)	127
BmtI	GCTAGC	1 cut(s)	453
BpiI	GAAGAC	1 cut(s)	258
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
BpmI	CTGGAG	1 cut(s)	320
Bpu14I	TTCGAA	1 cut(s)	327
BpuMI	CCSGG	1 cut(s)	226
BsaHI	GRCGYC	2 cut(s)	66, 222
BsaJI	CCNNGG	2 cut(s)	49, 337
BsaWI	WCCGGW	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	3 cut(s)	145, 165, 247
Bse118I	RCCGGY	1 cut(s)	162
BseAI	TCCGGA	1 cut(s)	121
BseBI	CCWGG	2 cut(s)	257, 338
BseDI	CCNNGG	2 cut(s)	49, 337
BseGI	GGATG	3 cut(s)	118, 348, 378
BseLI	CCNNNNNNNGG	3 cut(s)	145, 165, 247
BseXI	GCAGC	2 cut(s)	464, 477
Bsh1236I	CGCG	2 cut(s)	87, 133
BshFI	GGCC	1 cut(s)	188
BsiSI	CCGG	3 cut(s)	122, 163, 225
BslFI	GGGAC	2 cut(s)	77, 332
BslI	CCNNNNNNNGG	3 cut(s)	145, 165, 247
BsmAI	GTCTC	1 cut(s)	477
BsmBI	CGTCTC	1 cut(s)	477
BsmFI	GGGAC	2 cut(s)	77, 332
BsnI	GGCC	1 cut(s)	188
Bsp119I	TTCGAA	1 cut(s)	327
Bsp13I	TCCGGA	1 cut(s)	121
Bsp143I	GATC	5 cut(s)	17, 29, 196, 209, 331
BspACI	CCGC	6 cut(s)	27, 85, 90, 146, 149, 166
BspANI	GGCC	1 cut(s)	188
BspEI	TCCGGA	1 cut(s)	121
BspFNI	CGCG	2 cut(s)	87, 133
BspLI	GGNNCC	1 cut(s)	19
BspOI	GCTAGC	1 cut(s)	453
BspPI	GGATC	3 cut(s)	12, 25, 37
BspQI	GCTCTTC	1 cut(s)	439
BspT104I	TTCGAA	1 cut(s)	327
BsrFI	RCCGGY	1 cut(s)	162
BssAI	RCCGGY	1 cut(s)	162
BssECI	CCNNGG	2 cut(s)	49, 337
BssMI	GATC	5 cut(s)	17, 29, 196, 209, 331
BssNI	GRCGYC	2 cut(s)	66, 222
BssT1I	CCWWGG	1 cut(s)	49
Bst2UI	CCWGG	2 cut(s)	257, 338
Bst6I	CTCTTC	2 cut(s)	240, 439
BstACI	GRCGYC	2 cut(s)	66, 222
BstBI	TTCGAA	1 cut(s)	327
BstC8I	GCNNGC	3 cut(s)	101, 105, 451
BstENI	CCTNNNNNAGG	1 cut(s)	245
BstF5I	GGATG	3 cut(s)	118, 348, 378
BstFNI	CGCG	2 cut(s)	87, 133
BstHHI	GCGC	3 cut(s)	89, 133, 465
BstKTI	GATC	5 cut(s)	20, 32, 199, 212, 334
BstMAI	GTCTC	1 cut(s)	477
BstMBI	GATC	5 cut(s)	17, 29, 196, 209, 331
BstMWI	GCNNNNNNNGC	4 cut(s)	155, 172, 455, 474
BstNI	CCWGG	2 cut(s)	257, 338
BstSCI	CCNGG	3 cut(s)	224, 255, 336
BstUI	CGCG	2 cut(s)	87, 133
BstV1I	GCAGC	2 cut(s)	464, 477
BstV2I	GAAGAC	1 cut(s)	258
BstX2I	RGATCY	3 cut(s)	17, 29, 331
BstYI	RGATCY	3 cut(s)	17, 29, 331
BsuRI	GGCC	1 cut(s)	188
BtrI	CACGTC	1 cut(s)	471
BtsCI	GGATG	3 cut(s)	118, 348, 378
Cac8I	GCNNGC	3 cut(s)	101, 105, 451
CfoI	GCGC	3 cut(s)	89, 133, 465
Cfr10I	RCCGGY	1 cut(s)	162
CseI	GACGC	2 cut(s)	74, 230
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	3 cut(s)	274, 292, 397
CviJI	RGCY	5 cut(s)	103, 158, 188, 432, 458
CviKI_1	RGCY	5 cut(s)	103, 158, 188, 432, 458
CviQI	GTAC	1 cut(s)	217
DpnI	GATC	5 cut(s)	19, 31, 198, 211, 333
DpnII	GATC	5 cut(s)	17, 29, 196, 209, 331
Eam1104I	CTCTTC	2 cut(s)	240, 439
EarI	CTCTTC	2 cut(s)	240, 439
EciI	GGCGGA	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	49
Eco147I	AGGCCT	1 cut(s)	188
Eco32I	GATATC	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	373
EcoNI	CCTNNNNNAGG	1 cut(s)	245
EcoRII	CCWGG	2 cut(s)	255, 336
EcoRV	GATATC	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	49
Esp3I	CGTCTC	1 cut(s)	477
FaeI	CATG	3 cut(s)	277, 295, 400
FaiI	YATR	6 cut(s)	201, 275, 293, 356, 369, 398
FaqI	GGGAC	2 cut(s)	77, 332
FatI	CATG	3 cut(s)	273, 291, 396
FauI	CCCGC	1 cut(s)	142
Fnu4HI	GCNGC	4 cut(s)	90, 147, 466, 478
FokI	GGATG	3 cut(s)	105, 355, 385
Fsp4HI	GCNGC	4 cut(s)	90, 147, 466, 478
FspBI	CTAG	2 cut(s)	450, 481
GlaI	GCGC	3 cut(s)	88, 132, 464
GluI	GCNGC	4 cut(s)	90, 147, 466, 478
GsuI	CTGGAG	1 cut(s)	320
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	3 cut(s)	122, 163, 225
HgaI	GACGC	2 cut(s)	74, 230
HhaI	GCGC	3 cut(s)	89, 133, 465
Hin1I	GRCGYC	2 cut(s)	66, 222
Hin1II	CATG	3 cut(s)	277, 295, 400
Hin6I	GCGC	3 cut(s)	87, 131, 463
HinP1I	GCGC	3 cut(s)	87, 131, 463
HinfI	GANTC	3 cut(s)	55, 381, 400
HpaII	CCGG	3 cut(s)	122, 163, 225
Hpy188I	TCNGA	3 cut(s)	79, 111, 196
Hpy188III	TCNNGA	2 cut(s)	122, 438
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	2 cut(s)	5, 82
HpyCH4IV	ACGT	2 cut(s)	424, 470
HpyF10VI	GCNNNNNNNGC	4 cut(s)	155, 172, 455, 474
HpySE526I	ACGT	2 cut(s)	424, 470
Hsp92I	GRCGYC	2 cut(s)	66, 222
Hsp92II	CATG	3 cut(s)	277, 295, 400
HspAI	GCGC	3 cut(s)	87, 131, 463
Kpn2I	TCCGGA	1 cut(s)	121
Kzo9I	GATC	5 cut(s)	17, 29, 196, 209, 331
LguI	GCTCTTC	1 cut(s)	439
LpnPI	CCDG	9 cut(s)	46, 135, 152, 176, 238, 242, 269, 323, 350
Lsp1109I	GCAGC	2 cut(s)	464, 477
LweI	GCATC	1 cut(s)	127
MaeI	CTAG	2 cut(s)	450, 481
MaeII	ACGT	2 cut(s)	424, 470
MaeIII	GTNAC	1 cut(s)	443
MalI	GATC	5 cut(s)	19, 31, 198, 211, 333
MboI	GATC	5 cut(s)	17, 29, 196, 209, 331
MboII	GAAGA	5 cut(s)	24, 257, 263, 341, 426
MflI	RGATCY	3 cut(s)	17, 29, 331
MluCI	AATT	1 cut(s)	260
MmeI	TCCRAC	2 cut(s)	45, 428
MnlI	CCTC	6 cut(s)	8, 79, 178, 241, 307, 434
MroI	TCCGGA	1 cut(s)	121
MspI	CCGG	3 cut(s)	122, 163, 225
MspR9I	CCNGG	3 cut(s)	226, 257, 338
MvaI	CCWGG	2 cut(s)	257, 338
MvnI	CGCG	2 cut(s)	87, 133
MwoI	GCNNNNNNNGC	4 cut(s)	155, 172, 455, 474
NciI	CCSGG	1 cut(s)	226
NdeII	GATC	5 cut(s)	17, 29, 196, 209, 331
NheI	GCTAGC	1 cut(s)	449
NlaIII	CATG	3 cut(s)	277, 295, 400
NlaIV	GGNNCC	1 cut(s)	19
NspV	TTCGAA	1 cut(s)	327
PceI	AGGCCT	1 cut(s)	188
PciSI	GCTCTTC	1 cut(s)	439
PfeI	GAWTC	3 cut(s)	55, 381, 400
PkrI	GCNGC	4 cut(s)	91, 148, 467, 479
Psp6I	CCWGG	2 cut(s)	255, 336
PspGI	CCWGG	2 cut(s)	255, 336
PspN4I	GGNNCC	1 cut(s)	19
PsuI	RGATCY	3 cut(s)	17, 29, 331
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SapI	GCTCTTC	1 cut(s)	439
SatI	GCNGC	4 cut(s)	90, 147, 466, 478
Sau3AI	GATC	5 cut(s)	17, 29, 196, 209, 331
ScrFI	CCNGG	3 cut(s)	226, 257, 338
SetI	ASST	4 cut(s)	105, 427, 445, 473
SfaNI	GCATC	1 cut(s)	127
SfuI	TTCGAA	1 cut(s)	327
Sse9I	AATT	1 cut(s)	260
SseBI	AGGCCT	1 cut(s)	188
SsiI	CCGC	6 cut(s)	27, 85, 90, 146, 149, 166
SspMI	CTAG	2 cut(s)	450, 481
StuI	AGGCCT	1 cut(s)	188
StyD4I	CCNGG	3 cut(s)	224, 255, 336
StyI	CCWWGG	1 cut(s)	49
TaiI	ACGT	2 cut(s)	427, 473
TaqI	TCGA	3 cut(s)	327, 384, 437
TasI	AATT	1 cut(s)	260
TauI	GCSGC	2 cut(s)	92, 149
TfiI	GAWTC	3 cut(s)	55, 381, 400
TseI	GCWGC	2 cut(s)	465, 477
TspDTI	ATGAA	3 cut(s)	262, 311, 413
XagI	CCTNNNNNAGG	1 cut(s)	245
XapI	RAATTY	1 cut(s)	260
XspI	CTAG	2 cut(s)	450, 481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.