Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0007938

Physical Location & Seq

Genomic Coordinates Forward (+)

43373941 .. 43374982

Gene Structure 1042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00422500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGACAGGGATGGAGGATCCAACGGCGGATCTTGCTACTACTCCGTCCTCGGGATCCGCAAGGATGCCTCCTTCTCTGATATCCGCACCGCTTACCGTAAACTCGCCATGAAATGGCATCCTGATAGGTGGGCCCGGAACCAGAACCCGTCGGTGGCCGGAGAAGCGAATCGGCGGTTTCAGCAAATCCAAGAAGCCTATTCGGTTCTCTCGGATCAGGGGAAGAGGTCACTGTACGACGCCGGGGTCTACGACCCGCTTGAAGAAGAAGACGAAGAATTTGGGGACTTCATGCAAGAGATGATTTCCATGATGAACAGTGTGAAGGACGAGGGCGACAGTATTGAAGATCTCCAGAGGATGTTTGTGGAAATGGTTGGTGGAGATGGGAGCCACGGAATGGGGTTTGACATCGGCAGCATGGATCCAACGGCCGCAAAGAAGGCACGTGTCGGTTCGTCCAGAAGCAACTCTAACGCCGCCAAGCACGGCACGTCGCGGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0030016 GO:0030017 GO:0030018 GO:0031674 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043292 GO:0044422 GO:0044424 GO:0044444 GO:0044449 GO:0044464 GO:0099080 GO:0099081 GO:0099512

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

168

Amino Acids

18.69

Weight (kDa)

5.1

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	13 - 80	6.2e-23	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56300 AT1G56300
fragaria_vesca	FvH4_6g07140 FvH4_6g07140 FvH4_6g07140 FvH4_6g07140 FvH4_6g07140
malus_domestica	MD04G1195900.v1.1 MD12G1208600.v1.1
prunus_persica	Prupe.6G315800_v2.0.a1 Prupe.6G315800_v2.0.a1 Prupe.6G315800_v2.0.a1
pyrus_communis	pycom04g17320 pycom12g19580
rosa_chinensis	RchiOBHm_Chr3g0456731
rosa_laevigata	RLG00000025280
rosa_multiflora	Rmu_sc0037808.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422500
rosa_rugosa	Rorug03G0015400
rosa_samantha	Rh3AG075900 Rh3BG077800 Rh3CG077600 Rh3DG079500
rosa_wichuraiana	Rw3G006510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	245
AccB7I	CCANNNNNTGG	2 cut(s)	114, 400
AccI	GTMKAC	1 cut(s)	249
AccII	CGCG	1 cut(s)	499
AciI	CCGC	9 cut(s)	27, 58, 85, 90, 175, 257, 435, 480, 499
AclWI	GGATC	8 cut(s)	12, 25, 37, 49, 62, 222, 419, 432
AcoI	YGGCCR	2 cut(s)	156, 432
AcsI	RAATTY	1 cut(s)	278
AcvI	CACGTG	1 cut(s)	449
AcyI	GRCGYC	1 cut(s)	240
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	4 cut(s)	51, 114, 154, 400
AflIII	ACRYGT	1 cut(s)	448
AgsI	TTSAA	2 cut(s)	263, 347
AjiI	CACGTC	1 cut(s)	495
AlwI	GGATC	8 cut(s)	12, 25, 37, 49, 62, 222, 419, 432
Ama87I	CYCGRG	1 cut(s)	50
AoxI	GGCC	3 cut(s)	132, 156, 432
ApaI	GGGCCC	1 cut(s)	136
ApeKI	GCWGC	1 cut(s)	417
ApoI	RAATTY	1 cut(s)	278
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
AspS9I	GGNCC	2 cut(s)	132, 133
AsuC2I	CCSGG	2 cut(s)	136, 244
AvaI	CYCGRG	1 cut(s)	50
BaeGI	GKGCMC	1 cut(s)	136
BamHI	GGATCC	3 cut(s)	17, 54, 424
BanII	GRGCYC	1 cut(s)	136
BbrPI	CACGTG	1 cut(s)	449
BbsI	GAAGAC	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	429
BccI	CCATC	2 cut(s)	5, 380
BceAI	ACGGC	3 cut(s)	40, 447, 505
BcnI	CCSGG	2 cut(s)	136, 244
BfaI	CTAG	1 cut(s)	505
BglII	AGATCT	1 cut(s)	349
BisI	GCNGC	3 cut(s)	418, 435, 480
BlsI	GCNGC	3 cut(s)	419, 436, 481
Bme1390I	CCNGG	2 cut(s)	136, 244
BmeT110I	CYCGRG	1 cut(s)	50
BmgBI	CACGTC	1 cut(s)	495
BmgT120I	GGNCC	2 cut(s)	132, 133
BmiI	GGNNCC	6 cut(s)	19, 56, 134, 140, 392, 426
BmrFI	CCNGG	2 cut(s)	136, 244
BmsI	GCATC	2 cut(s)	55, 127
BpiI	GAAGAC	1 cut(s)	276
BpmI	CTGGAG	1 cut(s)	338
BpuMI	CCSGG	2 cut(s)	136, 244
BsaAI	YACGTR	1 cut(s)	449
BsaHI	GRCGYC	1 cut(s)	240
BsaJI	CCNNGG	3 cut(s)	49, 243, 394
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 114, 154, 400
BseDI	CCNNGG	3 cut(s)	49, 243, 394
BseGI	GGATG	4 cut(s)	16, 70, 118, 366
BseLI	CCNNNNNNNGG	4 cut(s)	51, 114, 154, 400
BseSI	GKGCMC	1 cut(s)	136
BseX3I	CGGCCG	1 cut(s)	432
BseXI	GCAGC	1 cut(s)	429
Bsh1236I	CGCG	1 cut(s)	499
Bsh1285I	CGRYCG	1 cut(s)	435
BshFI	GGCC	3 cut(s)	134, 158, 434
BsiEI	CGRYCG	1 cut(s)	435
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	3 cut(s)	136, 159, 243
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	4 cut(s)	51, 114, 154, 400
BsmFI	GGGAC	1 cut(s)	299
BsnI	GGCC	3 cut(s)	134, 158, 434
BsoBI	CYCGRG	1 cut(s)	50
Bsp120I	GGGCCC	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp143I	GATC	6 cut(s)	17, 29, 54, 214, 349, 424
BspACI	CCGC	9 cut(s)	27, 58, 85, 90, 175, 257, 435, 480, 499
BspANI	GGCC	3 cut(s)	134, 158, 434
BspFNI	CGCG	1 cut(s)	499
BspLI	GGNNCC	6 cut(s)	19, 56, 134, 140, 392, 426
BspPI	GGATC	8 cut(s)	12, 25, 37, 49, 62, 222, 419, 432
BssECI	CCNNGG	3 cut(s)	49, 243, 394
BssMI	GATC	6 cut(s)	17, 29, 54, 214, 349, 424
BssNI	GRCGYC	1 cut(s)	240
Bst4CI	ACNGT	4 cut(s)	98, 234, 320, 341
Bst6I	CTCTTC	1 cut(s)	218
BstACI	GRCGYC	1 cut(s)	240
BstBAI	YACGTR	1 cut(s)	449
BstDSI	CCRYGG	1 cut(s)	394
BstF5I	GGATG	4 cut(s)	16, 70, 118, 366
BstFNI	CGCG	1 cut(s)	499
BstKTI	GATC	6 cut(s)	20, 32, 57, 217, 352, 427
BstMBI	GATC	6 cut(s)	17, 29, 54, 214, 349, 424
BstMCI	CGRYCG	1 cut(s)	435
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 164, 181, 443
BstSCI	CCNGG	2 cut(s)	134, 242
BstSLI	GKGCMC	1 cut(s)	136
BstUI	CGCG	1 cut(s)	499
BstV1I	GCAGC	1 cut(s)	429
BstV2I	GAAGAC	1 cut(s)	276
BstX2I	RGATCY	5 cut(s)	17, 29, 54, 349, 424
BstYI	RGATCY	5 cut(s)	17, 29, 54, 349, 424
BstZI	CGGCCG	1 cut(s)	432
BsuRI	GGCC	3 cut(s)	134, 158, 434
BtgI	CCRYGG	1 cut(s)	394
BtrI	CACGTC	1 cut(s)	495
BtsCI	GGATG	4 cut(s)	16, 70, 118, 366
BtsIMutI	CAGTG	2 cut(s)	230, 325
Cfr13I	GGNCC	2 cut(s)	132, 133
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	4 cut(s)	109, 292, 310, 421
CviJI	RGCY	5 cut(s)	134, 158, 197, 393, 434
CviKI_1	RGCY	5 cut(s)	134, 158, 197, 393, 434
CviQI	GTAC	1 cut(s)	235
DpnI	GATC	6 cut(s)	19, 31, 56, 216, 351, 426
DpnII	GATC	6 cut(s)	17, 29, 54, 214, 349, 424
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
EaeI	YGGCCR	2 cut(s)	156, 432
EagI	CGGCCG	1 cut(s)	432
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
EciI	GGCGGA	1 cut(s)	42
EclXI	CGGCCG	1 cut(s)	432
Eco24I	GRGCYC	1 cut(s)	136
Eco32I	GATATC	1 cut(s)	82
Eco52I	CGGCCG	1 cut(s)	432
Eco72I	CACGTG	1 cut(s)	449
Eco88I	CYCGRG	1 cut(s)	50
EcoRV	GATATC	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	136
FaeI	CATG	4 cut(s)	112, 295, 313, 424
FaiI	YATR	4 cut(s)	110, 293, 311, 422
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	4 cut(s)	108, 291, 309, 420
FauI	CCCGC	1 cut(s)	264
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	3 cut(s)	418, 435, 480
FokI	GGATG	4 cut(s)	23, 77, 105, 373
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	3 cut(s)	418, 435, 480
FspBI	CTAG	1 cut(s)	505
GluI	GCNGC	3 cut(s)	418, 435, 480
GsuI	CTGGAG	1 cut(s)	338
HaeIII	GGCC	3 cut(s)	134, 158, 434
HapII	CCGG	3 cut(s)	136, 159, 243
HgaI	GACGC	1 cut(s)	248
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	4 cut(s)	112, 295, 313, 424
HinfI	GANTC	1 cut(s)	169
HpaII	CCGG	3 cut(s)	136, 159, 243
Hpy166II	GTNNAC	2 cut(s)	101, 250
Hpy188I	TCNGA	2 cut(s)	79, 214
Hpy188III	TCNNGA	4 cut(s)	52, 122, 355, 462
Hpy8I	GTNNAC	2 cut(s)	101, 250
Hpy99I	CGWCG	3 cut(s)	154, 242, 499
HpyAV	CCTTC	3 cut(s)	82, 319, 436
HpyCH4III	ACNGT	4 cut(s)	98, 234, 320, 341
HpyCH4IV	ACGT	2 cut(s)	448, 494
HpyCH4V	TGCA	1 cut(s)	295
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 164, 181, 443
HpySE526I	ACGT	2 cut(s)	448, 494
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	4 cut(s)	112, 295, 313, 424
Kzo9I	GATC	6 cut(s)	17, 29, 54, 214, 349, 424
LmnI	GCTCC	1 cut(s)	390
LpnPI	CCDG	8 cut(s)	135, 149, 155, 172, 203, 256, 368, 475
Lsp1109I	GCAGC	1 cut(s)	429
LweI	GCATC	2 cut(s)	55, 127
MaeI	CTAG	1 cut(s)	505
MaeII	ACGT	2 cut(s)	448, 494
MaeIII	GTNAC	1 cut(s)	228
MalI	GATC	6 cut(s)	19, 31, 56, 216, 351, 426
MboI	GATC	6 cut(s)	17, 29, 54, 214, 349, 424
MboII	GAAGA	6 cut(s)	235, 275, 278, 281, 287, 359
MflI	RGATCY	5 cut(s)	17, 29, 54, 349, 424
MhlI	GDGCHC	1 cut(s)	136
MluCI	AATT	1 cut(s)	278
MmeI	TCCRAC	2 cut(s)	45, 452
MnlI	CCTC	6 cut(s)	8, 59, 79, 219, 325, 351
MspI	CCGG	3 cut(s)	136, 159, 243
MspR9I	CCNGG	2 cut(s)	136, 244
MvnI	CGCG	1 cut(s)	499
MwoI	GCNNNNNNNGC	4 cut(s)	33, 164, 181, 443
NciI	CCSGG	2 cut(s)	136, 244
NdeII	GATC	6 cut(s)	17, 29, 54, 214, 349, 424
NlaIII	CATG	4 cut(s)	112, 295, 313, 424
NlaIV	GGNNCC	6 cut(s)	19, 56, 134, 140, 392, 426
NmuCI	GTSAC	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	169
PflMI	CCANNNNNTGG	2 cut(s)	114, 400
PkrI	GCNGC	3 cut(s)	419, 436, 481
PmaCI	CACGTG	1 cut(s)	449
PmlI	CACGTG	1 cut(s)	449
Ppu21I	YACGTR	1 cut(s)	449
PspCI	CACGTG	1 cut(s)	449
PspN4I	GGNNCC	6 cut(s)	19, 56, 134, 140, 392, 426
PspOMI	GGGCCC	1 cut(s)	132
PspPI	GGNCC	2 cut(s)	132, 133
PsuI	RGATCY	5 cut(s)	17, 29, 54, 349, 424
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SatI	GCNGC	3 cut(s)	418, 435, 480
Sau3AI	GATC	6 cut(s)	17, 29, 54, 214, 349, 424
Sau96I	GGNCC	2 cut(s)	132, 133
ScrFI	CCNGG	2 cut(s)	136, 244
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	4 cut(s)	131, 230, 451, 497
SfaNI	GCATC	2 cut(s)	55, 127
Sse9I	AATT	1 cut(s)	278
SsiI	CCGC	9 cut(s)	27, 58, 85, 90, 175, 257, 435, 480, 499
SspMI	CTAG	1 cut(s)	505
StyD4I	CCNGG	2 cut(s)	134, 242
TaaI	ACNGT	4 cut(s)	98, 234, 320, 341
TaiI	ACGT	2 cut(s)	451, 497
TasI	AATT	1 cut(s)	278
TauI	GCSGC	2 cut(s)	437, 482
TfiI	GAWTC	1 cut(s)	169
TscAI	CASTG	2 cut(s)	237, 325
TseFI	GTSAC	1 cut(s)	228
TseI	GCWGC	1 cut(s)	417
Tsp45I	GTSAC	1 cut(s)	228
TspDTI	ATGAA	3 cut(s)	125, 280, 329
TspGWI	ACGGA	2 cut(s)	34, 411
TspRI	CASTG	2 cut(s)	237, 325
Van91I	CCANNNNNTGG	2 cut(s)	114, 400
XapI	RAATTY	1 cut(s)	278
XmiI	GTMKAC	1 cut(s)	249
XspI	CTAG	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.