Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0007938

Physical Location & Seq

Genomic Coordinates Reverse (-)

6092442 .. 6093471

Gene Structure 1030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG077600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGACAGGGATGGAGGATCCAACGGCGGATCTTGCTACTACTCCGTCCTCGGGATCCGCAAGGATGCCTCCTTCTCTGATATCCGCACCGCTTACCGCAAACTCGCCATGAAATGGCATCCGGATAGGTGGGCCCAGAACCAGAACCCGTCGGTGGCCGGAGAAGCGAATCGGCGGTTTCAGCAAATCCAAGAAGCGTATTCGGTTCTCTCGGATCAGGGGAAGAGGTCAATGTACGACGCTGGGGTCTACGACCCGCTTGAAGAAGAAGACGAAGAATTTGGGGACTTCATGCAAGAGATGATCTCCATGATGAACACTGTGAAGGACGAGGGGGACAGTTTTGAAGATCTCCAGAGGATGTTTGTGGAAATGGTTGGTGGAGATGGGAGCCACGGAATGGGGTTTGACATTGGTAGTACGGATCCAACGGCCGCAAAGAAGGCACGTGTCGGTTCGTCCAGAAGCAACTCTAACGCCGCCAAGCGCGGCACGTCGCGGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0030016 GO:0030017 GO:0030018 GO:0031674 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043292 GO:0044422 GO:0044424 GO:0044444 GO:0044449 GO:0044464 GO:0099080 GO:0099081 GO:0099512

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

168

Amino Acids

18.71

Weight (kDa)

4.98

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	13 - 80	3e-23	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56300 AT1G56300
fragaria_vesca	FvH4_6g07140 FvH4_6g07140 FvH4_6g07140 FvH4_6g07140 FvH4_6g07140
malus_domestica	MD04G1195900.v1.1 MD12G1208600.v1.1
prunus_persica	Prupe.6G315800_v2.0.a1 Prupe.6G315800_v2.0.a1 Prupe.6G315800_v2.0.a1
pyrus_communis	pycom04g17320 pycom12g19580
rosa_chinensis	RchiOBHm_Chr3g0456731
rosa_laevigata	RLG00000025280
rosa_multiflora	Rmu_sc0037808.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422500
rosa_rugosa	Rorug03G0015400
rosa_samantha	Rh3AG075900 Rh3BG077800 Rh3CG077600 Rh3DG079500
rosa_wichuraiana	Rw3G006510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	245
AccB7I	CCANNNNNTGG	2 cut(s)	114, 400
AccI	GTMKAC	1 cut(s)	249
AccII	CGCG	2 cut(s)	489, 499
AccIII	TCCGGA	1 cut(s)	121
AclWI	GGATC	8 cut(s)	12, 25, 37, 49, 62, 222, 419, 432
AcoI	YGGCCR	2 cut(s)	156, 432
AcsI	RAATTY	1 cut(s)	278
AcvI	CACGTG	1 cut(s)	449
AfaI	GTAC	2 cut(s)	236, 421
AfiI	CCNNNNNNNGG	4 cut(s)	51, 114, 154, 400
AflIII	ACRYGT	1 cut(s)	448
AgsI	TTSAA	2 cut(s)	263, 347
AjiI	CACGTC	1 cut(s)	495
AlwI	GGATC	8 cut(s)	12, 25, 37, 49, 62, 222, 419, 432
Ama87I	CYCGRG	1 cut(s)	50
Aor13HI	TCCGGA	1 cut(s)	121
AoxI	GGCC	3 cut(s)	132, 156, 432
ApaI	GGGCCC	1 cut(s)	136
ApoI	RAATTY	1 cut(s)	278
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
AspLEI	GCGC	1 cut(s)	489
AspS9I	GGNCC	2 cut(s)	132, 133
AvaI	CYCGRG	1 cut(s)	50
BaeGI	GKGCMC	1 cut(s)	136
BamHI	GGATCC	3 cut(s)	17, 54, 424
BanII	GRGCYC	1 cut(s)	136
BbrPI	CACGTG	1 cut(s)	449
BbsI	GAAGAC	1 cut(s)	276
BccI	CCATC	2 cut(s)	5, 380
BceAI	ACGGC	2 cut(s)	40, 447
BfaI	CTAG	1 cut(s)	505
BglII	AGATCT	1 cut(s)	349
BisI	GCNGC	3 cut(s)	435, 480, 490
BlsI	GCNGC	3 cut(s)	436, 481, 491
BmeT110I	CYCGRG	1 cut(s)	50
BmgBI	CACGTC	1 cut(s)	495
BmgT120I	GGNCC	2 cut(s)	132, 133
BmiI	GGNNCC	5 cut(s)	19, 56, 134, 392, 426
BmsI	GCATC	2 cut(s)	55, 127
BpiI	GAAGAC	1 cut(s)	276
BplI	GAGNNNNNCTC	2 cut(s)	290, 322
BpmI	CTGGAG	1 cut(s)	338
BsaAI	YACGTR	1 cut(s)	449
BsaJI	CCNNGG	2 cut(s)	49, 394
BsaWI	WCCGGW	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 114, 154, 400
BseAI	TCCGGA	1 cut(s)	121
BseDI	CCNNGG	2 cut(s)	49, 394
BseGI	GGATG	4 cut(s)	16, 70, 118, 366
BseLI	CCNNNNNNNGG	4 cut(s)	51, 114, 154, 400
BseSI	GKGCMC	1 cut(s)	136
BseX3I	CGGCCG	1 cut(s)	432
BseYI	CCCAGC	1 cut(s)	242
Bsh1236I	CGCG	2 cut(s)	489, 499
Bsh1285I	CGRYCG	1 cut(s)	435
BshFI	GGCC	3 cut(s)	134, 158, 434
BsiEI	CGRYCG	1 cut(s)	435
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	2 cut(s)	122, 159
BslFI	GGGAC	2 cut(s)	299, 350
BslI	CCNNNNNNNGG	4 cut(s)	51, 114, 154, 400
BsmFI	GGGAC	2 cut(s)	299, 350
BsnI	GGCC	3 cut(s)	134, 158, 434
BsoBI	CYCGRG	1 cut(s)	50
Bsp120I	GGGCCC	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp13I	TCCGGA	1 cut(s)	121
Bsp143I	GATC	7 cut(s)	17, 29, 54, 214, 303, 349, 424
BspANI	GGCC	3 cut(s)	134, 158, 434
BspEI	TCCGGA	1 cut(s)	121
BspFNI	CGCG	2 cut(s)	489, 499
BspLI	GGNNCC	5 cut(s)	19, 56, 134, 392, 426
BspPI	GGATC	8 cut(s)	12, 25, 37, 49, 62, 222, 419, 432
BssECI	CCNNGG	2 cut(s)	49, 394
BssMI	GATC	7 cut(s)	17, 29, 54, 214, 303, 349, 424
Bst4CI	ACNGT	2 cut(s)	322, 341
Bst6I	CTCTTC	1 cut(s)	218
BstBAI	YACGTR	1 cut(s)	449
BstDSI	CCRYGG	1 cut(s)	394
BstF5I	GGATG	4 cut(s)	16, 70, 118, 366
BstFNI	CGCG	2 cut(s)	489, 499
BstHHI	GCGC	1 cut(s)	489
BstKTI	GATC	7 cut(s)	20, 32, 57, 217, 306, 352, 427
BstMBI	GATC	7 cut(s)	17, 29, 54, 214, 303, 349, 424
BstMCI	CGRYCG	1 cut(s)	435
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 164, 181, 443
BstSLI	GKGCMC	1 cut(s)	136
BstUI	CGCG	2 cut(s)	489, 499
BstV2I	GAAGAC	1 cut(s)	276
BstX2I	RGATCY	5 cut(s)	17, 29, 54, 349, 424
BstYI	RGATCY	5 cut(s)	17, 29, 54, 349, 424
BstZI	CGGCCG	1 cut(s)	432
BsuRI	GGCC	3 cut(s)	134, 158, 434
BtgI	CCRYGG	1 cut(s)	394
BtrI	CACGTC	1 cut(s)	495
BtsCI	GGATG	4 cut(s)	16, 70, 118, 366
BtsIMutI	CAGTG	1 cut(s)	318
CfoI	GCGC	1 cut(s)	489
Cfr13I	GGNCC	2 cut(s)	132, 133
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	2 cut(s)	235, 420
CviAII	CATG	3 cut(s)	109, 292, 310
CviJI	RGCY	4 cut(s)	134, 158, 393, 434
CviKI_1	RGCY	4 cut(s)	134, 158, 393, 434
CviQI	GTAC	2 cut(s)	235, 420
DpnI	GATC	7 cut(s)	19, 31, 56, 216, 305, 351, 426
DpnII	GATC	7 cut(s)	17, 29, 54, 214, 303, 349, 424
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
EaeI	YGGCCR	2 cut(s)	156, 432
EagI	CGGCCG	1 cut(s)	432
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
EciI	GGCGGA	1 cut(s)	42
EclXI	CGGCCG	1 cut(s)	432
Eco24I	GRGCYC	1 cut(s)	136
Eco32I	GATATC	1 cut(s)	82
Eco52I	CGGCCG	1 cut(s)	432
Eco72I	CACGTG	1 cut(s)	449
Eco88I	CYCGRG	1 cut(s)	50
EcoRV	GATATC	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	136
FaeI	CATG	3 cut(s)	112, 295, 313
FaiI	YATR	3 cut(s)	110, 293, 311
FaqI	GGGAC	2 cut(s)	299, 350
FatI	CATG	3 cut(s)	108, 291, 309
FauI	CCCGC	1 cut(s)	264
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	3 cut(s)	435, 480, 490
FokI	GGATG	4 cut(s)	23, 77, 105, 373
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	3 cut(s)	435, 480, 490
FspBI	CTAG	1 cut(s)	505
GlaI	GCGC	1 cut(s)	488
GluI	GCNGC	3 cut(s)	435, 480, 490
GsaI	CCCAGC	1 cut(s)	246
GsuI	CTGGAG	1 cut(s)	338
HaeIII	GGCC	3 cut(s)	134, 158, 434
HapII	CCGG	2 cut(s)	122, 159
HgaI	GACGC	1 cut(s)	248
HhaI	GCGC	1 cut(s)	489
Hin1II	CATG	3 cut(s)	112, 295, 313
Hin6I	GCGC	1 cut(s)	487
HinP1I	GCGC	1 cut(s)	487
HinfI	GANTC	1 cut(s)	169
HpaII	CCGG	2 cut(s)	122, 159
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	2 cut(s)	79, 214
Hpy188III	TCNNGA	4 cut(s)	52, 122, 355, 462
Hpy8I	GTNNAC	1 cut(s)	250
Hpy99I	CGWCG	3 cut(s)	154, 242, 499
HpyAV	CCTTC	3 cut(s)	82, 319, 436
HpyCH4III	ACNGT	2 cut(s)	322, 341
HpyCH4IV	ACGT	2 cut(s)	448, 494
HpyCH4V	TGCA	1 cut(s)	295
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 164, 181, 443
HpySE526I	ACGT	2 cut(s)	448, 494
Hsp92II	CATG	3 cut(s)	112, 295, 313
HspAI	GCGC	1 cut(s)	487
Kpn2I	TCCGGA	1 cut(s)	121
Kzo9I	GATC	7 cut(s)	17, 29, 54, 214, 303, 349, 424
LmnI	GCTCC	1 cut(s)	390
LpnPI	CCDG	8 cut(s)	135, 149, 155, 172, 203, 228, 368, 475
LweI	GCATC	2 cut(s)	55, 127
MaeI	CTAG	1 cut(s)	505
MaeII	ACGT	2 cut(s)	448, 494
MalI	GATC	7 cut(s)	19, 31, 56, 216, 305, 351, 426
MboI	GATC	7 cut(s)	17, 29, 54, 214, 303, 349, 424
MboII	GAAGA	6 cut(s)	235, 275, 278, 281, 287, 359
MflI	RGATCY	5 cut(s)	17, 29, 54, 349, 424
MhlI	GDGCHC	1 cut(s)	136
MluCI	AATT	1 cut(s)	278
MmeI	TCCRAC	2 cut(s)	45, 452
MnlI	CCTC	6 cut(s)	8, 59, 79, 219, 325, 351
MroI	TCCGGA	1 cut(s)	121
MspI	CCGG	2 cut(s)	122, 159
MvnI	CGCG	2 cut(s)	489, 499
MwoI	GCNNNNNNNGC	4 cut(s)	33, 164, 181, 443
NdeII	GATC	7 cut(s)	17, 29, 54, 214, 303, 349, 424
NlaIII	CATG	3 cut(s)	112, 295, 313
NlaIV	GGNNCC	5 cut(s)	19, 56, 134, 392, 426
PfeI	GAWTC	1 cut(s)	169
PflMI	CCANNNNNTGG	2 cut(s)	114, 400
PkrI	GCNGC	3 cut(s)	436, 481, 491
PmaCI	CACGTG	1 cut(s)	449
PmlI	CACGTG	1 cut(s)	449
Ppu21I	YACGTR	1 cut(s)	449
PspCI	CACGTG	1 cut(s)	449
PspFI	CCCAGC	1 cut(s)	242
PspN4I	GGNNCC	5 cut(s)	19, 56, 134, 392, 426
PspOMI	GGGCCC	1 cut(s)	132
PspPI	GGNCC	2 cut(s)	132, 133
PsuI	RGATCY	5 cut(s)	17, 29, 54, 349, 424
RsaI	GTAC	2 cut(s)	236, 421
RsaNI	GTAC	2 cut(s)	235, 420
SatI	GCNGC	3 cut(s)	435, 480, 490
Sau3AI	GATC	7 cut(s)	17, 29, 54, 214, 303, 349, 424
Sau96I	GGNCC	2 cut(s)	132, 133
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	4 cut(s)	131, 230, 451, 497
SfaNI	GCATC	2 cut(s)	55, 127
Sse9I	AATT	1 cut(s)	278
SspMI	CTAG	1 cut(s)	505
TaaI	ACNGT	2 cut(s)	322, 341
TaiI	ACGT	2 cut(s)	451, 497
TasI	AATT	1 cut(s)	278
TauI	GCSGC	3 cut(s)	437, 482, 492
TfiI	GAWTC	1 cut(s)	169
TscAI	CASTG	1 cut(s)	325
TspDTI	ATGAA	3 cut(s)	125, 280, 329
TspGWI	ACGGA	3 cut(s)	34, 411, 437
TspRI	CASTG	1 cut(s)	325
Van91I	CCANNNNNTGG	2 cut(s)	114, 400
XapI	RAATTY	1 cut(s)	278
XmiI	GTMKAC	1 cut(s)	249
XspI	CTAG	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.