Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0007938

Physical Location & Seq

Genomic Coordinates Reverse (-)

6092221 .. 6094207

Gene Structure 1987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG077800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGACAGGGATGGAGGATCCAACGGCGGATCTTGCTACTACTCCGTCCTCGGGATCCGCAAGGATGCCTCCTTCTCTGATATCCGCACCGCTTACCGCAAACTCGCCATGAAATGGCATCCGGATAGGTGGGCCCAGAACCAGAACCCGTCGGTGGCCGGAGAAGCGAATCGGCGGTTTCAGCAAATCCAAGAAGCGTATTCGGTTCTCTCGGATCAGGGGAAGAGGTCAATGTACGACGCTGGGGTCTACGACCCGCTTGAAGAAGAAGACGAAGTTCGTACCTTCTTCCTTCTCCTTTTATCCTGCCCAAGGCAAATGTTCACCGTACACAATTATCTGACTAAAACGACGTCGTTTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0030016 GO:0030017 GO:0030018 GO:0031674 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043292 GO:0044422 GO:0044424 GO:0044444 GO:0044449 GO:0044464 GO:0099080 GO:0099081 GO:0099512

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

121

Amino Acids

13.93

Weight (kDa)

6.72

Isoelectric Point (pI)

50.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	13 - 80	1.3e-23	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56300 AT1G56300
fragaria_vesca	FvH4_6g07140 FvH4_6g07140 FvH4_6g07140 FvH4_6g07140 FvH4_6g07140
malus_domestica	MD04G1195900.v1.1 MD12G1208600.v1.1
prunus_persica	Prupe.6G315800_v2.0.a1 Prupe.6G315800_v2.0.a1 Prupe.6G315800_v2.0.a1
pyrus_communis	pycom04g17320 pycom12g19580
rosa_chinensis	RchiOBHm_Chr3g0456731
rosa_laevigata	RLG00000025280
rosa_multiflora	Rmu_sc0037808.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422500
rosa_rugosa	Rorug03G0015400
rosa_samantha	Rh3AG075900 Rh3BG077800 Rh3CG077600 Rh3DG079500
rosa_wichuraiana	Rw3G006510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	245
AatII	GACGTC	1 cut(s)	356
AccB7I	CCANNNNNTGG	1 cut(s)	114
AccI	GTMKAC	1 cut(s)	249
AccIII	TCCGGA	1 cut(s)	121
AciI	CCGC	7 cut(s)	27, 58, 85, 90, 97, 175, 257
AclWI	GGATC	6 cut(s)	12, 25, 37, 49, 62, 222
AcoI	YGGCCR	1 cut(s)	156
AcyI	GRCGYC	1 cut(s)	353
AfaI	GTAC	3 cut(s)	236, 283, 330
AfiI	CCNNNNNNNGG	4 cut(s)	51, 114, 154, 312
AgsI	TTSAA	1 cut(s)	263
AlwI	GGATC	6 cut(s)	12, 25, 37, 49, 62, 222
Ama87I	CYCGRG	1 cut(s)	50
Aor13HI	TCCGGA	1 cut(s)	121
AoxI	GGCC	2 cut(s)	132, 156
ApaI	GGGCCC	1 cut(s)	136
AspS9I	GGNCC	2 cut(s)	132, 133
AsuHPI	GGTGA	1 cut(s)	316
AvaI	CYCGRG	1 cut(s)	50
BaeGI	GKGCMC	1 cut(s)	136
BamHI	GGATCC	2 cut(s)	17, 54
BanII	GRGCYC	1 cut(s)	136
BbsI	GAAGAC	1 cut(s)	276
BccI	CCATC	1 cut(s)	5
BceAI	ACGGC	1 cut(s)	40
BmeT110I	CYCGRG	1 cut(s)	50
BmgT120I	GGNCC	2 cut(s)	132, 133
BmiI	GGNNCC	3 cut(s)	19, 56, 134
BmsI	GCATC	2 cut(s)	55, 127
BpiI	GAAGAC	1 cut(s)	276
BsaHI	GRCGYC	1 cut(s)	353
BsaJI	CCNNGG	2 cut(s)	49, 311
BsaWI	WCCGGW	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 114, 154, 312
BseAI	TCCGGA	1 cut(s)	121
BseDI	CCNNGG	2 cut(s)	49, 311
BseGI	GGATG	3 cut(s)	16, 70, 118
BseLI	CCNNNNNNNGG	4 cut(s)	51, 114, 154, 312
BseSI	GKGCMC	1 cut(s)	136
BseYI	CCCAGC	1 cut(s)	242
BshFI	GGCC	2 cut(s)	134, 158
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	2 cut(s)	122, 159
BslI	CCNNNNNNNGG	4 cut(s)	51, 114, 154, 312
BsnI	GGCC	2 cut(s)	134, 158
BsoBI	CYCGRG	1 cut(s)	50
Bsp120I	GGGCCC	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp13I	TCCGGA	1 cut(s)	121
Bsp143I	GATC	4 cut(s)	17, 29, 54, 214
BspACI	CCGC	7 cut(s)	27, 58, 85, 90, 97, 175, 257
BspANI	GGCC	2 cut(s)	134, 158
BspEI	TCCGGA	1 cut(s)	121
BspLI	GGNNCC	3 cut(s)	19, 56, 134
BspPI	GGATC	6 cut(s)	12, 25, 37, 49, 62, 222
BssECI	CCNNGG	2 cut(s)	49, 311
BssMI	GATC	4 cut(s)	17, 29, 54, 214
BssNI	GRCGYC	1 cut(s)	353
BssT1I	CCWWGG	1 cut(s)	311
Bst4CI	ACNGT	1 cut(s)	328
Bst6I	CTCTTC	1 cut(s)	218
BstACI	GRCGYC	1 cut(s)	353
BstENI	CCTNNNNNAGG	1 cut(s)	310
BstF5I	GGATG	3 cut(s)	16, 70, 118
BstKTI	GATC	4 cut(s)	20, 32, 57, 217
BstMBI	GATC	4 cut(s)	17, 29, 54, 214
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 164, 181
BstSLI	GKGCMC	1 cut(s)	136
BstV2I	GAAGAC	1 cut(s)	276
BstX2I	RGATCY	3 cut(s)	17, 29, 54
BstYI	RGATCY	3 cut(s)	17, 29, 54
BsuRI	GGCC	2 cut(s)	134, 158
BtsCI	GGATG	3 cut(s)	16, 70, 118
Cfr13I	GGNCC	2 cut(s)	132, 133
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	3 cut(s)	235, 282, 329
CviAII	CATG	1 cut(s)	109
CviJI	RGCY	2 cut(s)	134, 158
CviKI_1	RGCY	2 cut(s)	134, 158
CviQI	GTAC	3 cut(s)	235, 282, 329
DpnI	GATC	4 cut(s)	19, 31, 56, 216
DpnII	GATC	4 cut(s)	17, 29, 54, 214
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
EaeI	YGGCCR	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
EciI	GGCGGA	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	311
Eco24I	GRGCYC	1 cut(s)	136
Eco32I	GATATC	1 cut(s)	82
Eco88I	CYCGRG	1 cut(s)	50
EcoNI	CCTNNNNNAGG	1 cut(s)	310
EcoRV	GATATC	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	311
EcoT38I	GRGCYC	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	311
FaeI	CATG	1 cut(s)	112
FaiI	YATR	2 cut(s)	110, 364
FatI	CATG	1 cut(s)	108
FauI	CCCGC	1 cut(s)	264
FblI	GTMKAC	1 cut(s)	249
FokI	GGATG	3 cut(s)	23, 77, 105
FriOI	GRGCYC	1 cut(s)	136
GsaI	CCCAGC	1 cut(s)	246
HaeIII	GGCC	2 cut(s)	134, 158
HapII	CCGG	2 cut(s)	122, 159
HgaI	GACGC	1 cut(s)	248
Hin1I	GRCGYC	1 cut(s)	353
Hin1II	CATG	1 cut(s)	112
HinfI	GANTC	1 cut(s)	169
HpaII	CCGG	2 cut(s)	122, 159
HphI	GGTGA	1 cut(s)	316
Hpy166II	GTNNAC	3 cut(s)	250, 324, 331
Hpy188I	TCNGA	3 cut(s)	79, 214, 342
Hpy188III	TCNNGA	2 cut(s)	52, 122
Hpy8I	GTNNAC	3 cut(s)	250, 324, 331
Hpy99I	CGWCG	4 cut(s)	154, 242, 355, 358
HpyAV	CCTTC	3 cut(s)	82, 295, 302
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4IV	ACGT	1 cut(s)	353
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 164, 181
HpySE526I	ACGT	1 cut(s)	353
Hsp92I	GRCGYC	1 cut(s)	353
Hsp92II	CATG	1 cut(s)	112
Kpn2I	TCCGGA	1 cut(s)	121
Kzo9I	GATC	4 cut(s)	17, 29, 54, 214
LpnPI	CCDG	7 cut(s)	135, 149, 155, 172, 203, 228, 319
LweI	GCATC	2 cut(s)	55, 127
MaeII	ACGT	1 cut(s)	353
MalI	GATC	4 cut(s)	19, 31, 56, 216
MboI	GATC	4 cut(s)	17, 29, 54, 214
MboII	GAAGA	5 cut(s)	235, 275, 278, 280, 281
MflI	RGATCY	3 cut(s)	17, 29, 54
MhlI	GDGCHC	1 cut(s)	136
MluCI	AATT	1 cut(s)	334
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	4 cut(s)	8, 59, 79, 219
MroI	TCCGGA	1 cut(s)	121
MspI	CCGG	2 cut(s)	122, 159
MwoI	GCNNNNNNNGC	3 cut(s)	33, 164, 181
NdeII	GATC	4 cut(s)	17, 29, 54, 214
NlaIII	CATG	1 cut(s)	112
NlaIV	GGNNCC	3 cut(s)	19, 56, 134
PfeI	GAWTC	1 cut(s)	169
PflMI	CCANNNNNTGG	1 cut(s)	114
PspFI	CCCAGC	1 cut(s)	242
PspN4I	GGNNCC	3 cut(s)	19, 56, 134
PspOMI	GGGCCC	1 cut(s)	132
PspPI	GGNCC	2 cut(s)	132, 133
PsuI	RGATCY	3 cut(s)	17, 29, 54
RsaI	GTAC	3 cut(s)	236, 283, 330
RsaNI	GTAC	3 cut(s)	235, 282, 329
Sau3AI	GATC	4 cut(s)	17, 29, 54, 214
Sau96I	GGNCC	2 cut(s)	132, 133
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	4 cut(s)	131, 230, 287, 356
SfaNI	GCATC	2 cut(s)	55, 127
Sse9I	AATT	1 cut(s)	334
SsiI	CCGC	7 cut(s)	27, 58, 85, 90, 97, 175, 257
StyI	CCWWGG	1 cut(s)	311
TaaI	ACNGT	1 cut(s)	328
TaiI	ACGT	1 cut(s)	356
TasI	AATT	1 cut(s)	334
TfiI	GAWTC	1 cut(s)	169
TspDTI	ATGAA	1 cut(s)	125
TspGWI	ACGGA	1 cut(s)	34
Van91I	CCANNNNNTGG	1 cut(s)	114
XagI	CCTNNNNNAGG	1 cut(s)	310
XmiI	GTMKAC	1 cut(s)	249
ZraI	GACGTC	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.