Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007938

Physical Location & Seq

Genomic Coordinates Forward (+)

28138068 .. 28139717

Gene Structure 1650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G315800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGATAGGGAGGGAGGATCCAACGGCGGATCTTGCTACTATGCCGTCCTCGGGATTCGCAGGGACGCCTCCTTCTCCGATATCCGTACCGCTTATCGCAAGCTCGCTCTGAAATGTCACCCAGACAGGGCTCGGAACCAAGCGGTGGCCGGAGAAGCCAAGCGGCGGTTTCAGCAGATCCAGGAAGCTTACTCGGTTCTCTCGGATCAGGCGAAGAGATCAATTTACGACGCCGGGCTCTACGACCCTCTTGAAGAAGACCAAGAATTTACGGATTTCATGCAAGAGATGGTGTCCATGATGAACAATGTGAAGGACGAGTTTCGAAGACCTCCAGAAGATGTTCGCCGACATGGTCGGTGGTGGAGATGGGATGGGATTCGACTTCAGCGACATGGATCCGACGTCCTCAAAGAAGCCACGTGTCGGTGCATCCAACACCGCCAAGCGCAGCGCGTCTCGGCGGTAGCGCGCTGTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0030016 GO:0030017 GO:0030018 GO:0031674 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043292 GO:0044422 GO:0044424 GO:0044444 GO:0044449 GO:0044464 GO:0099080 GO:0099081 GO:0099512

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

161

Amino Acids

18.65

Weight (kDa)

9.07

Isoelectric Point (pI)

60.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56300 AT1G56300
fragaria_vesca	FvH4_6g07140 FvH4_6g07140 FvH4_6g07140 FvH4_6g07140 FvH4_6g07140
malus_domestica	MD04G1195900.v1.1 MD12G1208600.v1.1
prunus_persica	Prupe.6G315800_v2.0.a1 Prupe.6G315800_v2.0.a1 Prupe.6G315800_v2.0.a1
pyrus_communis	pycom04g17320 pycom12g19580
rosa_chinensis	RchiOBHm_Chr3g0456731
rosa_laevigata	RLG00000025280
rosa_multiflora	Rmu_sc0037808.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422500
rosa_rugosa	Rorug03G0015400
rosa_samantha	Rh3AG075900 Rh3BG077800 Rh3CG077600 Rh3DG079500
rosa_wichuraiana	Rw3G006510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	408
AccB7I	CCANNNNNTGG	1 cut(s)	145
AccII	CGCG	2 cut(s)	456, 472
AciI	CCGC	7 cut(s)	27, 90, 143, 163, 166, 442, 464
AclWI	GGATC	7 cut(s)	12, 25, 37, 172, 213, 393, 406
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	1 cut(s)	266
AcuI	CTGAAG	1 cut(s)	371
AcvI	CACGTG	1 cut(s)	423
AcyI	GRCGYC	3 cut(s)	66, 231, 405
AfaI	GTAC	2 cut(s)	88, 478
AfiI	CCNNNNNNNGG	5 cut(s)	51, 127, 145, 165, 426
AflIII	ACRYGT	1 cut(s)	422
AgsI	TTSAA	1 cut(s)	254
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	2 cut(s)	103, 188
AluI	AGCT	2 cut(s)	103, 188
Alw26I	GTCTC	1 cut(s)	463
AlwI	GGATC	7 cut(s)	12, 25, 37, 172, 213, 393, 406
Ama87I	CYCGRG	1 cut(s)	50
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	1 cut(s)	451
ApoI	RAATTY	1 cut(s)	266
Asp700I	GAANNNNTTC	1 cut(s)	342
AspLEI	GCGC	4 cut(s)	451, 456, 472, 474
AsuC2I	CCSGG	1 cut(s)	235
AsuHPI	GGTGA	1 cut(s)	110
AsuII	TTCGAA	1 cut(s)	325
AvaI	CYCGRG	1 cut(s)	50
BamHI	GGATCC	2 cut(s)	17, 398
BanII	GRGCYC	2 cut(s)	133, 240
BbrPI	CACGTG	1 cut(s)	423
BbsI	GAAGAC	2 cut(s)	264, 334
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	3 cut(s)	283, 363, 368
BceAI	ACGGC	2 cut(s)	29, 40
BciT130I	CCWGG	1 cut(s)	182
BcnI	CCSGG	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	463
BisI	GCNGC	2 cut(s)	164, 452
BlsI	GCNGC	2 cut(s)	165, 453
Bme1390I	CCNGG	2 cut(s)	182, 235
BmeT110I	CYCGRG	1 cut(s)	50
BmiI	GGNNCC	3 cut(s)	19, 137, 400
BmrFI	CCNGG	2 cut(s)	182, 235
BmsI	GCATC	1 cut(s)	441
BpiI	GAAGAC	2 cut(s)	264, 334
BpmI	CTGGAG	1 cut(s)	318
Bpu14I	TTCGAA	1 cut(s)	325
BpuMI	CCSGG	1 cut(s)	235
BsaAI	YACGTR	1 cut(s)	423
BsaHI	GRCGYC	3 cut(s)	66, 231, 405
BsaJI	CCNNGG	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	5 cut(s)	51, 127, 145, 165, 426
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	1 cut(s)	49
BseGI	GGATG	2 cut(s)	379, 432
BseLI	CCNNNNNNNGG	5 cut(s)	51, 127, 145, 165, 426
BsePI	GCGCGC	1 cut(s)	470
BseXI	GCAGC	1 cut(s)	463
Bsh1236I	CGCG	2 cut(s)	456, 472
BshFI	GGCC	1 cut(s)	149
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	2 cut(s)	150, 234
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	5 cut(s)	51, 127, 145, 165, 426
BsmAI	GTCTC	1 cut(s)	463
BsmBI	CGTCTC	1 cut(s)	463
BsmFI	GGGAC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	149
BsoBI	CYCGRG	1 cut(s)	50
Bsp119I	TTCGAA	1 cut(s)	325
Bsp1286I	GDGCHC	2 cut(s)	133, 240
Bsp143I	GATC	6 cut(s)	17, 29, 177, 205, 218, 398
BspACI	CCGC	7 cut(s)	27, 90, 143, 163, 166, 442, 464
BspANI	GGCC	1 cut(s)	149
BspFNI	CGCG	2 cut(s)	456, 472
BspLI	GGNNCC	3 cut(s)	19, 137, 400
BspPI	GGATC	7 cut(s)	12, 25, 37, 172, 213, 393, 406
BspT104I	TTCGAA	1 cut(s)	325
BssECI	CCNNGG	1 cut(s)	49
BssHII	GCGCGC	1 cut(s)	470
BssMI	GATC	6 cut(s)	17, 29, 177, 205, 218, 398
BssNI	GRCGYC	3 cut(s)	66, 231, 405
Bst2UI	CCWGG	1 cut(s)	182
Bst6I	CTCTTC	1 cut(s)	209
BstACI	GRCGYC	3 cut(s)	66, 231, 405
BstBAI	YACGTR	1 cut(s)	423
BstBI	TTCGAA	1 cut(s)	325
BstC8I	GCNNGC	3 cut(s)	101, 105, 472
BstF5I	GGATG	2 cut(s)	379, 432
BstFNI	CGCG	2 cut(s)	456, 472
BstHHI	GCGC	4 cut(s)	451, 456, 472, 474
BstKTI	GATC	6 cut(s)	20, 32, 180, 208, 221, 401
BstMAI	GTCTC	1 cut(s)	463
BstMBI	GATC	6 cut(s)	17, 29, 177, 205, 218, 398
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 155, 172
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	2 cut(s)	180, 233
BstUI	CGCG	2 cut(s)	456, 472
BstV1I	GCAGC	1 cut(s)	463
BstV2I	GAAGAC	2 cut(s)	264, 334
BstX2I	RGATCY	4 cut(s)	17, 29, 177, 398
BstYI	RGATCY	4 cut(s)	17, 29, 177, 398
BsuRI	GGCC	1 cut(s)	149
BtsCI	GGATG	2 cut(s)	379, 432
Cac8I	GCNNGC	3 cut(s)	101, 105, 472
CfoI	GCGC	4 cut(s)	451, 456, 472, 474
CseI	GACGC	3 cut(s)	74, 239, 445
Csp6I	GTAC	2 cut(s)	87, 477
CviAII	CATG	4 cut(s)	280, 298, 353, 395
CviJI	RGCY	7 cut(s)	103, 131, 149, 158, 188, 238, 419
CviKI_1	RGCY	7 cut(s)	103, 131, 149, 158, 188, 238, 419
CviQI	GTAC	2 cut(s)	87, 477
DpnI	GATC	6 cut(s)	19, 31, 179, 207, 220, 400
DpnII	GATC	6 cut(s)	17, 29, 177, 205, 218, 398
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
EciI	GGCGGA	1 cut(s)	42
Eco24I	GRGCYC	2 cut(s)	133, 240
Eco32I	GATATC	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	371
Eco72I	CACGTG	1 cut(s)	423
Eco88I	CYCGRG	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	180
EcoRV	GATATC	1 cut(s)	82
EcoT38I	GRGCYC	2 cut(s)	133, 240
Esp3I	CGTCTC	1 cut(s)	463
FaeI	CATG	4 cut(s)	283, 301, 356, 398
FaiI	YATR	5 cut(s)	42, 281, 299, 354, 396
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	4 cut(s)	279, 297, 352, 394
Fnu4HI	GCNGC	2 cut(s)	164, 452
FokI	GGATG	2 cut(s)	386, 419
FriOI	GRGCYC	2 cut(s)	133, 240
Fsp4HI	GCNGC	2 cut(s)	164, 452
GlaI	GCGC	4 cut(s)	450, 455, 471, 473
GluI	GCNGC	2 cut(s)	164, 452
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	2 cut(s)	150, 234
HgaI	GACGC	3 cut(s)	74, 239, 445
HhaI	GCGC	4 cut(s)	451, 456, 472, 474
Hin1I	GRCGYC	3 cut(s)	66, 231, 405
Hin1II	CATG	4 cut(s)	283, 301, 356, 398
Hin6I	GCGC	4 cut(s)	449, 454, 470, 472
HinP1I	GCGC	4 cut(s)	449, 454, 470, 472
HindIII	AAGCTT	1 cut(s)	186
HinfI	GANTC	2 cut(s)	55, 379
HpaII	CCGG	2 cut(s)	150, 234
HphI	GGTGA	1 cut(s)	110
Hpy188I	TCNGA	5 cut(s)	79, 111, 135, 205, 403
Hpy188III	TCNNGA	3 cut(s)	52, 251, 335
Hpy99I	CGWCG	2 cut(s)	233, 407
HpyAV	CCTTC	2 cut(s)	82, 307
HpyCH4IV	ACGT	2 cut(s)	405, 422
HpyCH4V	TGCA	2 cut(s)	283, 432
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 155, 172
HpySE526I	ACGT	2 cut(s)	405, 422
Hsp92I	GRCGYC	3 cut(s)	66, 231, 405
Hsp92II	CATG	4 cut(s)	283, 301, 356, 398
HspAI	GCGC	4 cut(s)	449, 454, 470, 472
Kzo9I	GATC	6 cut(s)	17, 29, 177, 205, 218, 398
LpnPI	CCDG	9 cut(s)	46, 112, 135, 163, 167, 194, 194, 247, 348
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	1 cut(s)	441
MaeII	ACGT	2 cut(s)	405, 422
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	6 cut(s)	19, 31, 179, 207, 220, 400
MboI	GATC	6 cut(s)	17, 29, 177, 205, 218, 398
MboII	GAAGA	5 cut(s)	226, 266, 269, 339, 350
MflI	RGATCY	4 cut(s)	17, 29, 177, 398
MhlI	GDGCHC	2 cut(s)	133, 240
MluCI	AATT	2 cut(s)	222, 266
MmeI	TCCRAC	3 cut(s)	45, 426, 460
MnlI	CCTC	7 cut(s)	4, 8, 59, 79, 258, 342, 419
MroXI	GAANNNNTTC	1 cut(s)	342
MspI	CCGG	2 cut(s)	150, 234
MspR9I	CCNGG	2 cut(s)	182, 235
MteI	GCGCNGCGC	1 cut(s)	452
MvaI	CCWGG	1 cut(s)	182
MvnI	CGCG	2 cut(s)	456, 472
MwoI	GCNNNNNNNGC	3 cut(s)	33, 155, 172
NciI	CCSGG	1 cut(s)	235
NdeII	GATC	6 cut(s)	17, 29, 177, 205, 218, 398
NlaIII	CATG	4 cut(s)	283, 301, 356, 398
NlaIV	GGNNCC	3 cut(s)	19, 137, 400
NmeAIII	GCCGAG	1 cut(s)	440
NmuCI	GTSAC	1 cut(s)	116
NspV	TTCGAA	1 cut(s)	325
PauI	GCGCGC	1 cut(s)	470
PcsI	WCGNNNNNNNCGW	2 cut(s)	209, 388
PdmI	GAANNNNTTC	1 cut(s)	342
PfeI	GAWTC	2 cut(s)	55, 379
PflFI	GACNNNGTC	1 cut(s)	354
PflMI	CCANNNNNTGG	1 cut(s)	145
PfoI	TCCNGGA	1 cut(s)	180
PkrI	GCNGC	2 cut(s)	165, 453
PmaCI	CACGTG	1 cut(s)	423
PmlI	CACGTG	1 cut(s)	423
Ppu21I	YACGTR	1 cut(s)	423
Psp6I	CCWGG	1 cut(s)	180
PspCI	CACGTG	1 cut(s)	423
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	3 cut(s)	19, 137, 400
PsuI	RGATCY	4 cut(s)	17, 29, 177, 398
PsyI	GACNNNGTC	1 cut(s)	354
PteI	GCGCGC	1 cut(s)	470
RsaI	GTAC	2 cut(s)	88, 478
RsaNI	GTAC	2 cut(s)	87, 477
SatI	GCNGC	2 cut(s)	164, 452
Sau3AI	GATC	6 cut(s)	17, 29, 177, 205, 218, 398
ScrFI	CCNGG	2 cut(s)	182, 235
SduI	GDGCHC	2 cut(s)	133, 240
SetI	ASST	6 cut(s)	105, 190, 334, 408, 425, 482
SfaNI	GCATC	1 cut(s)	441
SfuI	TTCGAA	1 cut(s)	325
Sse9I	AATT	2 cut(s)	222, 266
SsiI	CCGC	7 cut(s)	27, 90, 143, 163, 166, 442, 464
StyD4I	CCNGG	2 cut(s)	180, 233
TaiI	ACGT	2 cut(s)	408, 425
TaqI	TCGA	2 cut(s)	325, 382
TasI	AATT	2 cut(s)	222, 266
TauI	GCSGC	1 cut(s)	166
TfiI	GAWTC	2 cut(s)	55, 379
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	1 cut(s)	451
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	2 cut(s)	268, 317
TspGWI	ACGGA	2 cut(s)	74, 287
Tth111I	GACNNNGTC	1 cut(s)	354
Van91I	CCANNNNNTGG	1 cut(s)	145
XapI	RAATTY	1 cut(s)	266
XmnI	GAANNNNTTC	1 cut(s)	342
ZraI	GACGTC	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.