Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0007938

Physical Location & Seq

Genomic Coordinates Forward (+)

28439385 .. 28441261

Gene Structure 1877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1195900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGATAAGGAAGGAGGATCCAACGGCGGATCTTCCTACTACGCCGTCCTTGGGATTCGCAGGGACGCCTCCTTCTCTGATATCCGCGCCGCCTACCGCAAGCTCGCTCTGAAATGGCATCCGGACAGGGCGCGAAACCAAATGGCGGCGGGAGAAGCCAACCGGCGGTTTCAGCAAATCCAAGAGGCCTACTCAGTTCTCTCAGATCAGACGAAGCGATCAATGTACGACGCCGGGTTCTACGACCCCCTTGAAGAGCAAGACCAGGAATTTTGCGATTTCATGGACGAAATGCTGTCCATGATGAACAACGTGAAAAACGAGGGGGACATTTTCGAAGATCTCCAGAGGATGTTCAACGATATGGTCGGTGGACATGGGATGATGGGATTCGACTTCAGCGACATGGATCCAACGGCGAACAAGAAGCCACGTGTCGGTTCTTCGAGAGGTAACGCTAGCACAGCGAAGCGCAGCACGTCTCGCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0030016 GO:0030017 GO:0030018 GO:0031674 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043292 GO:0044422 GO:0044424 GO:0044444 GO:0044449 GO:0044464 GO:0099080 GO:0099081 GO:0099512

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

164

Amino Acids

18.46

Weight (kDa)

5.44

Isoelectric Point (pI)

48.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	12 - 77	1.1e-24	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56300 AT1G56300
fragaria_vesca	FvH4_6g07140 FvH4_6g07140 FvH4_6g07140 FvH4_6g07140 FvH4_6g07140
malus_domestica	MD04G1195900.v1.1 MD12G1208600.v1.1
prunus_persica	Prupe.6G315800_v2.0.a1 Prupe.6G315800_v2.0.a1 Prupe.6G315800_v2.0.a1
pyrus_communis	pycom04g17320 pycom12g19580
rosa_chinensis	RchiOBHm_Chr3g0456731
rosa_laevigata	RLG00000025280
rosa_multiflora	Rmu_sc0037808.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422500
rosa_rugosa	Rorug03G0015400
rosa_samantha	Rh3AG075900 Rh3BG077800 Rh3CG077600 Rh3DG079500
rosa_wichuraiana	Rw3G006510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	87, 133
AccIII	TCCGGA	1 cut(s)	121
AciI	CCGC	7 cut(s)	27, 85, 90, 97, 146, 149, 166
AclWI	GGATC	5 cut(s)	12, 25, 37, 404, 417
AcsI	RAATTY	1 cut(s)	269
AcuI	CTGAAG	1 cut(s)	382
AcvI	CACGTG	1 cut(s)	434
AcyI	GRCGYC	2 cut(s)	66, 231
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	4 cut(s)	51, 145, 165, 437
AflIII	ACRYGT	1 cut(s)	433
AgsI	TTSAA	2 cut(s)	254, 358
AjiI	CACGTC	1 cut(s)	480
AjnI	CCWGG	1 cut(s)	264
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
Alw26I	GTCTC	1 cut(s)	486
AlwI	GGATC	5 cut(s)	12, 25, 37, 404, 417
Aor13HI	TCCGGA	1 cut(s)	121
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	2 cut(s)	474, 486
ApoI	RAATTY	1 cut(s)	269
AspLEI	GCGC	3 cut(s)	89, 133, 474
AsuC2I	CCSGG	1 cut(s)	235
AsuII	TTCGAA	1 cut(s)	336
AsuNHI	GCTAGC	1 cut(s)	458
BamHI	GGATCC	2 cut(s)	17, 409
BbrPI	CACGTG	1 cut(s)	434
BbvI	GCAGC	2 cut(s)	473, 486
BccI	CCATC	1 cut(s)	379
BceAI	ACGGC	3 cut(s)	29, 40, 432
BciT130I	CCWGG	1 cut(s)	266
BcnI	CCSGG	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	486
BfaI	CTAG	2 cut(s)	459, 490
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	4 cut(s)	90, 147, 475, 487
BlsI	GCNGC	4 cut(s)	91, 148, 476, 488
Bme1390I	CCNGG	2 cut(s)	235, 266
BmgBI	CACGTC	1 cut(s)	480
BmiI	GGNNCC	2 cut(s)	19, 411
BmrFI	CCNGG	2 cut(s)	235, 266
BmsI	GCATC	1 cut(s)	127
BmtI	GCTAGC	1 cut(s)	462
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
BpmI	CTGGAG	1 cut(s)	329
Bpu14I	TTCGAA	1 cut(s)	336
BpuMI	CCSGG	1 cut(s)	235
BsaAI	YACGTR	1 cut(s)	434
BsaHI	GRCGYC	2 cut(s)	66, 231
BsaJI	CCNNGG	1 cut(s)	49
BsaWI	WCCGGW	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 145, 165, 437
Bse118I	RCCGGY	1 cut(s)	162
BseAI	TCCGGA	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	1 cut(s)	49
BseGI	GGATG	3 cut(s)	118, 357, 387
BseLI	CCNNNNNNNGG	4 cut(s)	51, 145, 165, 437
BseMII	CTCAG	2 cut(s)	207, 216
BseXI	GCAGC	2 cut(s)	473, 486
Bsh1236I	CGCG	2 cut(s)	87, 133
BshFI	GGCC	1 cut(s)	188
BsiSI	CCGG	3 cut(s)	122, 163, 234
BslFI	GGGAC	2 cut(s)	77, 341
BslI	CCNNNNNNNGG	4 cut(s)	51, 145, 165, 437
BsmAI	GTCTC	1 cut(s)	486
BsmBI	CGTCTC	1 cut(s)	486
BsmFI	GGGAC	2 cut(s)	77, 341
BsnI	GGCC	1 cut(s)	188
Bsp119I	TTCGAA	1 cut(s)	336
Bsp13I	TCCGGA	1 cut(s)	121
Bsp143I	GATC	6 cut(s)	17, 29, 205, 218, 340, 409
BspACI	CCGC	7 cut(s)	27, 85, 90, 97, 146, 149, 166
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	2 cut(s)	206, 215
BspEI	TCCGGA	1 cut(s)	121
BspFNI	CGCG	2 cut(s)	87, 133
BspLI	GGNNCC	2 cut(s)	19, 411
BspOI	GCTAGC	1 cut(s)	462
BspPI	GGATC	5 cut(s)	12, 25, 37, 404, 417
BspQI	GCTCTTC	1 cut(s)	249
BspT104I	TTCGAA	1 cut(s)	336
BsrFI	RCCGGY	1 cut(s)	162
BssAI	RCCGGY	1 cut(s)	162
BssECI	CCNNGG	1 cut(s)	49
BssMI	GATC	6 cut(s)	17, 29, 205, 218, 340, 409
BssNI	GRCGYC	2 cut(s)	66, 231
BssT1I	CCWWGG	1 cut(s)	49
Bst2UI	CCWGG	1 cut(s)	266
Bst6I	CTCTTC	1 cut(s)	249
BstACI	GRCGYC	2 cut(s)	66, 231
BstBAI	YACGTR	1 cut(s)	434
BstBI	TTCGAA	1 cut(s)	336
BstC8I	GCNNGC	3 cut(s)	101, 105, 460
BstDEI	CTNAG	2 cut(s)	193, 202
BstF5I	GGATG	3 cut(s)	118, 357, 387
BstFNI	CGCG	2 cut(s)	87, 133
BstHHI	GCGC	3 cut(s)	89, 133, 474
BstKTI	GATC	6 cut(s)	20, 32, 208, 221, 343, 412
BstMAI	GTCTC	1 cut(s)	486
BstMBI	GATC	6 cut(s)	17, 29, 205, 218, 340, 409
BstMWI	GCNNNNNNNGC	4 cut(s)	155, 172, 464, 483
BstNI	CCWGG	1 cut(s)	266
BstSCI	CCNGG	2 cut(s)	233, 264
BstUI	CGCG	2 cut(s)	87, 133
BstV1I	GCAGC	2 cut(s)	473, 486
BstX2I	RGATCY	4 cut(s)	17, 29, 340, 409
BstYI	RGATCY	4 cut(s)	17, 29, 340, 409
BsuRI	GGCC	1 cut(s)	188
BtrI	CACGTC	1 cut(s)	480
BtsCI	GGATG	3 cut(s)	118, 357, 387
Cac8I	GCNNGC	3 cut(s)	101, 105, 460
CfoI	GCGC	3 cut(s)	89, 133, 474
Cfr10I	RCCGGY	1 cut(s)	162
CseI	GACGC	2 cut(s)	74, 239
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	4 cut(s)	283, 301, 377, 406
CviJI	RGCY	4 cut(s)	103, 158, 188, 430
CviKI_1	RGCY	4 cut(s)	103, 158, 188, 430
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	2 cut(s)	193, 202
DpnI	GATC	6 cut(s)	19, 31, 207, 220, 342, 411
DpnII	GATC	6 cut(s)	17, 29, 205, 218, 340, 409
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
EciI	GGCGGA	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	49
Eco147I	AGGCCT	1 cut(s)	188
Eco32I	GATATC	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	382
Eco72I	CACGTG	1 cut(s)	434
EcoRII	CCWGG	1 cut(s)	264
EcoRV	GATATC	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	49
Esp3I	CGTCTC	1 cut(s)	486
FaeI	CATG	4 cut(s)	286, 304, 380, 409
FaiI	YATR	5 cut(s)	284, 302, 365, 378, 407
FaqI	GGGAC	2 cut(s)	77, 341
FatI	CATG	4 cut(s)	282, 300, 376, 405
FauI	CCCGC	1 cut(s)	142
Fnu4HI	GCNGC	4 cut(s)	90, 147, 475, 487
FokI	GGATG	3 cut(s)	105, 364, 394
Fsp4HI	GCNGC	4 cut(s)	90, 147, 475, 487
FspBI	CTAG	2 cut(s)	459, 490
GlaI	GCGC	3 cut(s)	88, 132, 473
GluI	GCNGC	4 cut(s)	90, 147, 475, 487
GsuI	CTGGAG	1 cut(s)	329
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	3 cut(s)	122, 163, 234
HgaI	GACGC	2 cut(s)	74, 239
HhaI	GCGC	3 cut(s)	89, 133, 474
Hin1I	GRCGYC	2 cut(s)	66, 231
Hin1II	CATG	4 cut(s)	286, 304, 380, 409
Hin6I	GCGC	3 cut(s)	87, 131, 472
HinP1I	GCGC	3 cut(s)	87, 131, 472
HinfI	GANTC	2 cut(s)	55, 390
HpaII	CCGG	3 cut(s)	122, 163, 234
Hpy166II	GTNNAC	1 cut(s)	374
Hpy188I	TCNGA	4 cut(s)	79, 111, 205, 210
Hpy188III	TCNNGA	3 cut(s)	122, 346, 447
Hpy8I	GTNNAC	1 cut(s)	374
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	2 cut(s)	5, 82
HpyCH4IV	ACGT	3 cut(s)	312, 433, 479
HpyF10VI	GCNNNNNNNGC	4 cut(s)	155, 172, 464, 483
HpyF3I	CTNAG	2 cut(s)	193, 202
HpySE526I	ACGT	3 cut(s)	312, 433, 479
Hsp92I	GRCGYC	2 cut(s)	66, 231
Hsp92II	CATG	4 cut(s)	286, 304, 380, 409
HspAI	GCGC	3 cut(s)	87, 131, 472
Kpn2I	TCCGGA	1 cut(s)	121
Kzo9I	GATC	6 cut(s)	17, 29, 205, 218, 340, 409
LguI	GCTCTTC	1 cut(s)	249
LpnPI	CCDG	8 cut(s)	46, 112, 135, 176, 247, 251, 278, 359
Lsp1109I	GCAGC	2 cut(s)	473, 486
LweI	GCATC	1 cut(s)	127
MaeI	CTAG	2 cut(s)	459, 490
MaeII	ACGT	3 cut(s)	312, 433, 479
MaeIII	GTNAC	1 cut(s)	452
MalI	GATC	6 cut(s)	19, 31, 207, 220, 342, 411
MboI	GATC	6 cut(s)	17, 29, 205, 218, 340, 409
MboII	GAAGA	4 cut(s)	24, 266, 350, 435
MflI	RGATCY	4 cut(s)	17, 29, 340, 409
MluCI	AATT	1 cut(s)	269
MmeI	TCCRAC	2 cut(s)	45, 437
MnlI	CCTC	6 cut(s)	8, 79, 178, 316, 342, 443
MroI	TCCGGA	1 cut(s)	121
MspI	CCGG	3 cut(s)	122, 163, 234
MspR9I	CCNGG	2 cut(s)	235, 266
MvaI	CCWGG	1 cut(s)	266
MvnI	CGCG	2 cut(s)	87, 133
MwoI	GCNNNNNNNGC	4 cut(s)	155, 172, 464, 483
NciI	CCSGG	1 cut(s)	235
NdeII	GATC	6 cut(s)	17, 29, 205, 218, 340, 409
NheI	GCTAGC	1 cut(s)	458
NlaIII	CATG	4 cut(s)	286, 304, 380, 409
NlaIV	GGNNCC	2 cut(s)	19, 411
NspV	TTCGAA	1 cut(s)	336
PceI	AGGCCT	1 cut(s)	188
PciSI	GCTCTTC	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	2 cut(s)	318, 399
PfeI	GAWTC	2 cut(s)	55, 390
PkrI	GCNGC	4 cut(s)	91, 148, 476, 488
PmaCI	CACGTG	1 cut(s)	434
PmlI	CACGTG	1 cut(s)	434
Ppu21I	YACGTR	1 cut(s)	434
Psp6I	CCWGG	1 cut(s)	264
PspCI	CACGTG	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	2 cut(s)	19, 411
PsuI	RGATCY	4 cut(s)	17, 29, 340, 409
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
SapI	GCTCTTC	1 cut(s)	249
SatI	GCNGC	4 cut(s)	90, 147, 475, 487
Sau3AI	GATC	6 cut(s)	17, 29, 205, 218, 340, 409
ScrFI	CCNGG	2 cut(s)	235, 266
SetI	ASST	5 cut(s)	105, 315, 436, 454, 482
SfaNI	GCATC	1 cut(s)	127
SfuI	TTCGAA	1 cut(s)	336
Sse9I	AATT	1 cut(s)	269
SseBI	AGGCCT	1 cut(s)	188
SsiI	CCGC	7 cut(s)	27, 85, 90, 97, 146, 149, 166
SspMI	CTAG	2 cut(s)	459, 490
StuI	AGGCCT	1 cut(s)	188
StyD4I	CCNGG	2 cut(s)	233, 264
StyI	CCWWGG	1 cut(s)	49
TaiI	ACGT	3 cut(s)	315, 436, 482
TaqI	TCGA	3 cut(s)	336, 393, 446
TasI	AATT	1 cut(s)	269
TauI	GCSGC	2 cut(s)	92, 149
TfiI	GAWTC	2 cut(s)	55, 390
TseI	GCWGC	2 cut(s)	474, 486
TspDTI	ATGAA	2 cut(s)	271, 320
XapI	RAATTY	1 cut(s)	269
XspI	CTAG	2 cut(s)	459, 490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.