Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007938

Physical Location & Seq

Genomic Coordinates Reverse (-)

4297684 .. 4299440

Gene Structure 1757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g07140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGACCGGGAAGGAGGATCCAACGGCGGATCTTGCTACTACTCCGTCCTCGGGATTCGCAAGGACGCCTCCTTCTCGGACATCCGCACAGCTTACCGCAAACTCGCCATGAAATGGCATCCGGACAGGTGGTCCGGGAACAAGAACCTCTCGGTGGCCGGAGACGCGAATCGGCGGTTTCAGCAAATCCAGGAAGCTTATTCGGTTCTCTCGGATCAGGGGAAGAGGTCAATGTACGACGCCGGGCTCTACGACCCGCTTGAAGAGGAAGACGAAGAATTTGGGGATTTCATGCAAGAGATGATTTCCATGATGAACAATGTGAAGGACGAGGGCGACAGCTTTGAGGACCTCCAGAGGATGTTTGTGGAAATGGTAGGTGCTGATGGGAACCACGGAATGGGGTTTGACATCGGCGGCATGGATCCAACCGCCAACAAAAAGGCACGTGCCGGCTCGTCCCGAAGTAACATTAACGCCGCCGCCAATCGCGGCACTTCGCGCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0030016 GO:0030017 GO:0030018 GO:0031674 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043292 GO:0044422 GO:0044424 GO:0044444 GO:0044449 GO:0044464 GO:0099080 GO:0099081 GO:0099512

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

170

Amino Acids

18.8

Weight (kDa)

4.98

Isoelectric Point (pI)

48.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	13 - 80	9.1e-23	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56300 AT1G56300
fragaria_vesca	FvH4_6g07140 FvH4_6g07140 FvH4_6g07140 FvH4_6g07140 FvH4_6g07140
malus_domestica	MD04G1195900.v1.1 MD12G1208600.v1.1
prunus_persica	Prupe.6G315800_v2.0.a1 Prupe.6G315800_v2.0.a1 Prupe.6G315800_v2.0.a1
pyrus_communis	pycom04g17320 pycom12g19580
rosa_chinensis	RchiOBHm_Chr3g0456731
rosa_laevigata	RLG00000025280
rosa_multiflora	Rmu_sc0037808.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422500
rosa_rugosa	Rorug03G0015400
rosa_samantha	Rh3AG075900 Rh3BG077800 Rh3CG077600 Rh3DG079500
rosa_wichuraiana	Rw3G006510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	114, 400
AccII	CGCG	3 cut(s)	167, 492, 502
AccIII	TCCGGA	1 cut(s)	121
AclWI	GGATC	6 cut(s)	12, 25, 37, 222, 419, 432
AcoI	YGGCCR	1 cut(s)	156
AcsI	RAATTY	1 cut(s)	278
AcvI	CACGTG	1 cut(s)	449
AcyI	GRCGYC	2 cut(s)	66, 240
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	4 cut(s)	51, 114, 154, 400
AgsI	TTSAA	1 cut(s)	263
AhdI	GACNNNNNGTC	1 cut(s)	130
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	3 cut(s)	92, 197, 342
AluI	AGCT	3 cut(s)	92, 197, 342
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	6 cut(s)	12, 25, 37, 222, 419, 432
Ama87I	CYCGRG	1 cut(s)	50
Aor13HI	TCCGGA	1 cut(s)	121
AoxI	GGCC	1 cut(s)	156
ApeKI	GCWGC	1 cut(s)	504
ApoI	RAATTY	1 cut(s)	278
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
AspLEI	GCGC	1 cut(s)	504
AspS9I	GGNCC	3 cut(s)	4, 132, 349
AsuC2I	CCSGG	3 cut(s)	8, 136, 244
AvaI	CYCGRG	1 cut(s)	50
AvaII	GGWCC	3 cut(s)	4, 132, 349
BamHI	GGATCC	2 cut(s)	17, 424
BanII	GRGCYC	1 cut(s)	249
BbrPI	CACGTG	1 cut(s)	449
BbsI	GAAGAC	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	491
BccI	CCATC	1 cut(s)	380
BceAI	ACGGC	1 cut(s)	40
BciT130I	CCWGG	1 cut(s)	191
BcnI	CCSGG	3 cut(s)	8, 136, 244
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	1 cut(s)	508
BisI	GCNGC	5 cut(s)	418, 480, 483, 493, 505
BlsI	GCNGC	5 cut(s)	419, 481, 484, 494, 506
Bme1390I	CCNGG	4 cut(s)	8, 136, 191, 244
Bme18I	GGWCC	3 cut(s)	4, 132, 349
BmeRI	GACNNNNNGTC	1 cut(s)	130
BmeT110I	CYCGRG	1 cut(s)	50
BmgT120I	GGNCC	3 cut(s)	4, 132, 349
BmiI	GGNNCC	3 cut(s)	19, 392, 426
BmrFI	CCNGG	4 cut(s)	8, 136, 191, 244
BmsI	GCATC	1 cut(s)	127
BpiI	GAAGAC	1 cut(s)	276
BpmI	CTGGAG	1 cut(s)	338
BpuMI	CCSGG	3 cut(s)	8, 136, 244
BsaAI	YACGTR	1 cut(s)	449
BsaHI	GRCGYC	2 cut(s)	66, 240
BsaJI	CCNNGG	2 cut(s)	49, 394
BsaWI	WCCGGW	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 114, 154, 400
Bse118I	RCCGGY	1 cut(s)	452
BseAI	TCCGGA	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	2 cut(s)	49, 394
BseGI	GGATG	3 cut(s)	81, 118, 366
BseLI	CCNNNNNNNGG	4 cut(s)	51, 114, 154, 400
BseXI	GCAGC	1 cut(s)	491
Bsh1236I	CGCG	3 cut(s)	167, 492, 502
BshFI	GGCC	1 cut(s)	158
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	6 cut(s)	7, 122, 135, 159, 243, 453
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	4 cut(s)	51, 114, 154, 400
BsmAI	GTCTC	1 cut(s)	156
BsmBI	CGTCTC	1 cut(s)	156
BsmFI	GGGAC	1 cut(s)	445
BsnI	GGCC	1 cut(s)	158
BsoBI	CYCGRG	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp13I	TCCGGA	1 cut(s)	121
Bsp143I	GATC	4 cut(s)	17, 29, 214, 424
BspANI	GGCC	1 cut(s)	158
BspEI	TCCGGA	1 cut(s)	121
BspFNI	CGCG	3 cut(s)	167, 492, 502
BspLI	GGNNCC	3 cut(s)	19, 392, 426
BspPI	GGATC	6 cut(s)	12, 25, 37, 222, 419, 432
BsrFI	RCCGGY	1 cut(s)	452
BssAI	RCCGGY	1 cut(s)	452
BssECI	CCNNGG	2 cut(s)	49, 394
BssMI	GATC	4 cut(s)	17, 29, 214, 424
BssNI	GRCGYC	2 cut(s)	66, 240
Bst2UI	CCWGG	1 cut(s)	191
Bst6I	CTCTTC	2 cut(s)	218, 258
BstACI	GRCGYC	2 cut(s)	66, 240
BstBAI	YACGTR	1 cut(s)	449
BstC8I	GCNNGC	1 cut(s)	454
BstDSI	CCRYGG	1 cut(s)	394
BstF5I	GGATG	3 cut(s)	81, 118, 366
BstFNI	CGCG	3 cut(s)	167, 492, 502
BstHHI	GCGC	1 cut(s)	504
BstKTI	GATC	4 cut(s)	20, 32, 217, 427
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	4 cut(s)	17, 29, 214, 424
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 164, 181, 501
BstNI	CCWGG	1 cut(s)	191
BstSCI	CCNGG	4 cut(s)	6, 134, 189, 242
BstUI	CGCG	3 cut(s)	167, 492, 502
BstV1I	GCAGC	1 cut(s)	491
BstV2I	GAAGAC	1 cut(s)	276
BstX2I	RGATCY	3 cut(s)	17, 29, 424
BstYI	RGATCY	3 cut(s)	17, 29, 424
BsuRI	GGCC	1 cut(s)	158
BtgI	CCRYGG	1 cut(s)	394
BtsCI	GGATG	3 cut(s)	81, 118, 366
Cac8I	GCNNGC	1 cut(s)	454
CfoI	GCGC	1 cut(s)	504
Cfr10I	RCCGGY	1 cut(s)	452
Cfr13I	GGNCC	3 cut(s)	4, 132, 349
CseI	GACGC	3 cut(s)	74, 173, 248
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	4 cut(s)	109, 292, 310, 421
CviJI	RGCY	6 cut(s)	92, 158, 197, 247, 342, 456
CviKI_1	RGCY	6 cut(s)	92, 158, 197, 247, 342, 456
CviQI	GTAC	1 cut(s)	235
DpnI	GATC	4 cut(s)	19, 31, 216, 426
DpnII	GATC	4 cut(s)	17, 29, 214, 424
DriI	GACNNNNNGTC	1 cut(s)	130
EaeI	YGGCCR	1 cut(s)	156
Eam1104I	CTCTTC	2 cut(s)	218, 258
Eam1105I	GACNNNNNGTC	1 cut(s)	130
EarI	CTCTTC	2 cut(s)	218, 258
EciI	GGCGGA	1 cut(s)	42
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	3 cut(s)	4, 132, 349
Eco72I	CACGTG	1 cut(s)	449
Eco88I	CYCGRG	1 cut(s)	50
EcoO109I	RGGNCCY	1 cut(s)	349
EcoRII	CCWGG	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	249
Esp3I	CGTCTC	1 cut(s)	156
FaeI	CATG	4 cut(s)	112, 295, 313, 424
FaiI	YATR	4 cut(s)	110, 293, 311, 422
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	4 cut(s)	108, 291, 309, 420
FauI	CCCGC	1 cut(s)	264
Fnu4HI	GCNGC	5 cut(s)	418, 480, 483, 493, 505
FokI	GGATG	3 cut(s)	68, 105, 373
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	5 cut(s)	418, 480, 483, 493, 505
FspBI	CTAG	1 cut(s)	508
GlaI	GCGC	1 cut(s)	503
GluI	GCNGC	5 cut(s)	418, 480, 483, 493, 505
GsuI	CTGGAG	1 cut(s)	338
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	6 cut(s)	7, 122, 135, 159, 243, 453
HgaI	GACGC	3 cut(s)	74, 173, 248
HhaI	GCGC	1 cut(s)	504
Hin1I	GRCGYC	2 cut(s)	66, 240
Hin1II	CATG	4 cut(s)	112, 295, 313, 424
Hin6I	GCGC	1 cut(s)	502
HinP1I	GCGC	1 cut(s)	502
HindIII	AAGCTT	1 cut(s)	195
HinfI	GANTC	2 cut(s)	55, 169
HpaII	CCGG	6 cut(s)	7, 122, 135, 159, 243, 453
Hpy188I	TCNGA	2 cut(s)	79, 214
Hpy188III	TCNNGA	4 cut(s)	52, 122, 355, 462
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	3 cut(s)	5, 82, 319
HpyCH4IV	ACGT	1 cut(s)	448
HpyCH4V	TGCA	1 cut(s)	295
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 164, 181, 501
HpySE526I	ACGT	1 cut(s)	448
Hsp92I	GRCGYC	2 cut(s)	66, 240
Hsp92II	CATG	4 cut(s)	112, 295, 313, 424
HspAI	GCGC	1 cut(s)	502
Kpn2I	TCCGGA	1 cut(s)	121
KroI	GCCGGC	1 cut(s)	452
KroNI	GCCGGC	1 cut(s)	454
Kzo9I	GATC	4 cut(s)	17, 29, 214, 424
Lsp1109I	GCAGC	1 cut(s)	491
LweI	GCATC	1 cut(s)	127
MaeI	CTAG	1 cut(s)	508
MaeII	ACGT	1 cut(s)	448
MaeIII	GTNAC	1 cut(s)	467
MalI	GATC	4 cut(s)	19, 31, 216, 426
MboI	GATC	4 cut(s)	17, 29, 214, 424
MboII	GAAGA	4 cut(s)	235, 275, 281, 287
MflI	RGATCY	3 cut(s)	17, 29, 424
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	1 cut(s)	278
MmeI	TCCRAC	2 cut(s)	45, 452
MroI	TCCGGA	1 cut(s)	121
MroNI	GCCGGC	1 cut(s)	452
MseI	TTAA	1 cut(s)	474
MspI	CCGG	6 cut(s)	7, 122, 135, 159, 243, 453
MspR9I	CCNGG	4 cut(s)	8, 136, 191, 244
MvaI	CCWGG	1 cut(s)	191
MvnI	CGCG	3 cut(s)	167, 492, 502
MwoI	GCNNNNNNNGC	4 cut(s)	33, 164, 181, 501
NaeI	GCCGGC	1 cut(s)	454
NciI	CCSGG	3 cut(s)	8, 136, 244
NdeII	GATC	4 cut(s)	17, 29, 214, 424
NgoMIV	GCCGGC	1 cut(s)	452
NlaIII	CATG	4 cut(s)	112, 295, 313, 424
NlaIV	GGNNCC	3 cut(s)	19, 392, 426
PdiI	GCCGGC	1 cut(s)	454
PfeI	GAWTC	2 cut(s)	55, 169
PflMI	CCANNNNNTGG	2 cut(s)	114, 400
PfoI	TCCNGGA	2 cut(s)	134, 189
PkrI	GCNGC	5 cut(s)	419, 481, 484, 494, 506
PmaCI	CACGTG	1 cut(s)	449
PmlI	CACGTG	1 cut(s)	449
Ppu21I	YACGTR	1 cut(s)	449
PpuMI	RGGWCCY	1 cut(s)	349
Psp5II	RGGWCCY	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	189
PspCI	CACGTG	1 cut(s)	449
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	3 cut(s)	19, 392, 426
PspPI	GGNCC	3 cut(s)	4, 132, 349
PspPPI	RGGWCCY	1 cut(s)	349
PsuI	RGATCY	3 cut(s)	17, 29, 424
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	5 cut(s)	418, 480, 483, 493, 505
Sau3AI	GATC	4 cut(s)	17, 29, 214, 424
Sau96I	GGNCC	3 cut(s)	4, 132, 349
ScrFI	CCNGG	4 cut(s)	8, 136, 191, 244
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	9 cut(s)	94, 131, 150, 199, 230, 344, 354, 382, 451
SfaNI	GCATC	1 cut(s)	127
SinI	GGWCC	3 cut(s)	4, 132, 349
Sse9I	AATT	1 cut(s)	278
SspMI	CTAG	1 cut(s)	508
StyD4I	CCNGG	4 cut(s)	6, 134, 189, 242
TaiI	ACGT	1 cut(s)	451
TasI	AATT	1 cut(s)	278
TauI	GCSGC	4 cut(s)	420, 482, 485, 495
TfiI	GAWTC	2 cut(s)	55, 169
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TseI	GCWGC	1 cut(s)	504
TspDTI	ATGAA	3 cut(s)	125, 280, 329
TspGWI	ACGGA	2 cut(s)	34, 411
Van91I	CCANNNNNTGG	2 cut(s)	114, 400
VpaK11BI	GGWCC	3 cut(s)	4, 132, 349
XapI	RAATTY	1 cut(s)	278
XspI	CTAG	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.