Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013950

Physical Location & Seq

Genomic Coordinates Forward (+)

21316730 .. 21318192

Gene Structure 1463 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G57560.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGAAGAGACATTCTTGTTGTTACAAACAAAAGCTGAGAAAAGGTCTTTGGTCTCCTGAAGAAGATGAGAAACTTCTCAATTACATTACCAAACATGGCCATGGTTGCTGGAGTTCTGTCCCTAAACTCGCAGGTCTCGAGAGATGTGGAAAGAGCTGTAGACTCAGATGGATCAATTACTTAAGACCTGATTTAAAGAGAGGAGCTTTCTCTTCAGAGGAACAGAATCTCATTGTCGAGCTTCATGCTGTTCTTGGAAACAGATGGTCGCAAATTGCTGCGAGGCTTCCCGGGAGAACCGACAACGAGATAAAGAACTTGTGGAATTCGTGCATTAAGAAGAAGCTGATGAAGAAAGGCATTGACCCTATTACACATAAACCCCTCTCCGAGGTTGGTAAAGAAACAAACAGAAGCGACAATAACAATTCCACAAGTTTTTCCTCAGAAACTAATCAAGACTTGTTTGTCAAGAAAACGTCTGATTTTGCCGAGTATTCTGCGTTTCAGAAAGAAGAATCCAACTCTGTTTCACTCAGAAATTCGCTCTCTTCCATGATCCCAACGCAATTCAACATCGACGATGGTTCTGTCTCAAATGCGGGTTTTGATACACAAGTATGCGTGAAACCCTCGATTATTCTTCTTCCTCCTCCAAACAACACTTCAAGCACTGTCTCTGGACAGGATCATGTAAACGTGTCAGAGCCTAATTGGGAATCAAACAGTGGAACCACAAGCCACCTCAACAATCCCGGTATGGAAGAAATGAAATGGTCCGAGGAGTACCTAAACGAATCGTTATTCTCTACCCAAGTTTACGTGAAATCAGAGACGGATTTCAACTCCAACATTGCCTTTCCTTGGAGCCAAAGCCAAGCTTGTGACGTATTCCCCAAGGATCTTCAGAGAATGGCCTTCTCTTTTGGTGGTCAGACCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0010119 GO:0010154 GO:0010214 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

314

Amino Acids

35.46

Weight (kDa)

7.58

Isoelectric Point (pI)

52.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	1.9e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 75	4.4e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 110	1.2e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 116	5.2e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G57560 AT1G57560
fragaria_vesca	FvH4_3g13230
malus_domestica	MD05G1243900.v1.1 MD10G1225800.v1.1
prunus_persica	Prupe.4G119700_v2.0.a1
pyrus_communis	pycom10g18970
rosa_chinensis	RchiOBHm_Chr5g0021591
rosa_laevigata	RLG00000032616
rosa_multiflora	Rmu_sc0016972.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057060
rosa_rugosa	Rorug05G0067500
rosa_samantha	Rh5AG156900 Rh5BG156400 Rh5CG170700 Rh5DG156700
rosa_wichuraiana	Rw0G007030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	467
Acc36I	ACCTGC	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	160
AciI	CCGC	1 cut(s)	602
AclWI	GGATC	4 cut(s)	179, 553, 696, 909
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	2 cut(s)	325, 541
AcuI	CTGAAG	3 cut(s)	78, 198, 890
AfaI	GTAC	1 cut(s)	788
AfiI	CCNNNNNNNGG	2 cut(s)	391, 864
AflII	CTTAAG	1 cut(s)	181
AflIII	ACRYGT	1 cut(s)	699
AgsI	TTSAA	3 cut(s)	574, 669, 844
AjuI	GAANNNNNNNTTGG	4 cut(s)	31, 63, 649, 681
AluBI	AGCT	6 cut(s)	34, 156, 206, 241, 346, 881
AluI	AGCT	6 cut(s)	34, 156, 206, 241, 346, 881
Alw26I	GTCTC	5 cut(s)	57, 140, 598, 682, 827
AlwI	GGATC	4 cut(s)	179, 553, 696, 909
Ama87I	CYCGRG	2 cut(s)	137, 290
AoxI	GGCC	2 cut(s)	97, 915
ApeKI	GCWGC	1 cut(s)	278
ApoI	RAATTY	2 cut(s)	325, 541
AspS9I	GGNCC	1 cut(s)	777
AsuC2I	CCSGG	3 cut(s)	291, 292, 756
AvaI	CYCGRG	2 cut(s)	137, 290
AvaII	GGWCC	1 cut(s)	777
BaeI	ACNNNNGTAYC	2 cut(s)	603, 636
BalI	TGGCCA	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	3 cut(s)	162, 258, 578
BcgI	CGANNNNNNTGC	4 cut(s)	227, 261, 482, 516
BcnI	CCSGG	3 cut(s)	291, 292, 756
BcoDI	GTCTC	5 cut(s)	57, 140, 598, 682, 827
BfmI	CTRYAG	1 cut(s)	157
BfrI	CTTAAG	1 cut(s)	181
BfuAI	ACCTGC	1 cut(s)	122
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
Bme1390I	CCNGG	3 cut(s)	291, 292, 756
Bme18I	GGWCC	1 cut(s)	777
BmeT110I	CYCGRG	2 cut(s)	137, 290
BmgT120I	GGNCC	1 cut(s)	777
BmiI	GGNNCC	2 cut(s)	733, 869
BmrFI	CCNGG	3 cut(s)	291, 292, 756
BpmI	CTGGAG	1 cut(s)	130
BpuMI	CCSGG	3 cut(s)	291, 292, 756
BsaAI	YACGTR	1 cut(s)	823
BsaI	GGTCTC	2 cut(s)	57, 140
BsaJI	CCNNGG	6 cut(s)	100, 290, 390, 780, 863, 897
Bsc4I	CCNNNNNNNGG	2 cut(s)	391, 864
Bse3DI	GCAATG	1 cut(s)	852
BseDI	CCNNGG	6 cut(s)	100, 290, 390, 780, 863, 897
BseLI	CCNNNNNNNGG	2 cut(s)	391, 864
BseMI	GCAATG	1 cut(s)	852
BseMII	CTCAG	4 cut(s)	26, 178, 459, 550
BseRI	GAGGAG	3 cut(s)	216, 642, 797
BseXI	GCAGC	1 cut(s)	265
BshFI	GGCC	2 cut(s)	99, 917
BsiHKCI	CYCGRG	2 cut(s)	137, 290
BsiSI	CCGG	2 cut(s)	291, 756
BslFI	GGGAC	1 cut(s)	104
BslI	CCNNNNNNNGG	2 cut(s)	391, 864
BsmAI	GTCTC	5 cut(s)	57, 140, 598, 682, 827
BsmBI	CGTCTC	1 cut(s)	827
BsmFI	GGGAC	1 cut(s)	104
BsnI	GGCC	2 cut(s)	99, 917
Bso31I	GGTCTC	2 cut(s)	57, 140
BsoBI	CYCGRG	2 cut(s)	137, 290
Bsp143I	GATC	4 cut(s)	171, 558, 688, 901
Bsp19I	CCATGG	1 cut(s)	100
BspACI	CCGC	1 cut(s)	602
BspANI	GGCC	2 cut(s)	99, 917
BspCNI	CTCAG	4 cut(s)	27, 177, 458, 549
BspLI	GGNNCC	2 cut(s)	733, 869
BspMI	ACCTGC	1 cut(s)	122
BspPI	GGATC	4 cut(s)	179, 553, 696, 909
BspTI	CTTAAG	1 cut(s)	181
BspTNI	GGTCTC	2 cut(s)	57, 140
BsrDI	GCAATG	1 cut(s)	852
BssECI	CCNNGG	6 cut(s)	100, 290, 390, 780, 863, 897
BssMI	GATC	4 cut(s)	171, 558, 688, 901
BssT1I	CCWWGG	3 cut(s)	100, 863, 897
Bst4CI	ACNGT	2 cut(s)	676, 728
Bst6I	CTCTTC	2 cut(s)	217, 556
BstAFI	CTTAAG	1 cut(s)	181
BstBAI	YACGTR	1 cut(s)	823
BstDEI	CTNAG	4 cut(s)	35, 164, 445, 536
BstDSI	CCRYGG	1 cut(s)	100
BstENI	CCTNNNNNAGG	1 cut(s)	389
BstKTI	GATC	4 cut(s)	174, 561, 691, 904
BstMAI	GTCTC	5 cut(s)	57, 140, 598, 682, 827
BstMBI	GATC	4 cut(s)	171, 558, 688, 901
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstSCI	CCNGG	3 cut(s)	289, 290, 754
BstSFI	CTRYAG	1 cut(s)	157
BstV1I	GCAGC	1 cut(s)	265
BstX2I	RGATCY	1 cut(s)	901
BstYI	RGATCY	1 cut(s)	901
BsuRI	GGCC	2 cut(s)	99, 917
BtgI	CCRYGG	1 cut(s)	100
BtsIMutI	CAGTG	2 cut(s)	672, 733
BveI	ACCTGC	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	777
Cfr9I	CCCGGG	1 cut(s)	290
Csp6I	GTAC	1 cut(s)	787
CviAII	CATG	5 cut(s)	95, 101, 245, 556, 692
CviQI	GTAC	1 cut(s)	787
DdeI	CTNAG	4 cut(s)	35, 164, 445, 536
DpnI	GATC	4 cut(s)	173, 560, 690, 903
DpnII	GATC	4 cut(s)	171, 558, 688, 901
DraI	TTTAAA	1 cut(s)	195
DrdI	GACNNNNNNGTC	1 cut(s)	467
DseDI	GACNNNNNNGTC	1 cut(s)	467
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	2 cut(s)	217, 556
EarI	CTCTTC	2 cut(s)	217, 556
Eco130I	CCWWGG	3 cut(s)	100, 863, 897
Eco31I	GGTCTC	2 cut(s)	57, 140
Eco47I	GGWCC	1 cut(s)	777
Eco57I	CTGAAG	3 cut(s)	78, 198, 890
Eco88I	CYCGRG	2 cut(s)	137, 290
EcoNI	CCTNNNNNAGG	1 cut(s)	389
EcoRI	GAATTC	1 cut(s)	325
EcoT14I	CCWWGG	3 cut(s)	100, 863, 897
ErhI	CCWWGG	3 cut(s)	100, 863, 897
Esp3I	CGTCTC	1 cut(s)	827
FaeI	CATG	5 cut(s)	98, 104, 248, 559, 695
FaiI	YATR	8 cut(s)	96, 102, 246, 378, 557, 622, 693, 761
FalI	AAGNNNNNCTT	2 cut(s)	865, 897
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	5 cut(s)	94, 100, 244, 555, 691
FauI	CCCGC	1 cut(s)	595
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	279
Fsp4HI	GCNGC	1 cut(s)	279
GluI	GCNGC	1 cut(s)	279
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	2 cut(s)	99, 917
HapII	CCGG	2 cut(s)	291, 756
Hin1II	CATG	5 cut(s)	98, 104, 248, 559, 695
HindIII	AAGCTT	1 cut(s)	879
HinfI	GANTC	5 cut(s)	162, 226, 518, 719, 797
HpaII	CCGG	2 cut(s)	291, 756
Hpy166II	GTNNAC	3 cut(s)	161, 697, 820
Hpy188III	TCNNGA	6 cut(s)	56, 137, 139, 458, 472, 681
Hpy8I	GTNNAC	3 cut(s)	161, 697, 820
Hpy99I	CGWCG	1 cut(s)	584
HpyAV	CCTTC	1 cut(s)	928
HpyCH4III	ACNGT	2 cut(s)	676, 728
HpyCH4IV	ACGT	4 cut(s)	479, 699, 822, 888
HpyCH4V	TGCA	1 cut(s)	333
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	4 cut(s)	35, 164, 445, 536
HpySE526I	ACGT	4 cut(s)	479, 699, 822, 888
Hsp92II	CATG	5 cut(s)	98, 104, 248, 559, 695
Kzo9I	GATC	4 cut(s)	171, 558, 688, 901
LmnI	GCTCC	2 cut(s)	203, 867
LpnPI	CCDG	8 cut(s)	69, 94, 117, 201, 304, 666, 671, 769
Lsp1109I	GCAGC	1 cut(s)	265
MaeII	ACGT	4 cut(s)	479, 699, 822, 888
MaeIII	GTNAC	2 cut(s)	20, 884
MalI	GATC	4 cut(s)	173, 560, 690, 903
MboI	GATC	4 cut(s)	171, 558, 688, 901
MflI	RGATCY	1 cut(s)	901
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	8 cut(s)	79, 175, 273, 325, 427, 541, 569, 712
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	156
MmeI	TCCRAC	2 cut(s)	546, 873
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	3 cut(s)	182, 194, 336
MslI	CAYNNNNRTG	2 cut(s)	99, 619
Msp20I	TGGCCA	1 cut(s)	99
MspCI	CTTAAG	1 cut(s)	181
MspI	CCGG	2 cut(s)	291, 756
MspR9I	CCNGG	3 cut(s)	291, 292, 756
MwoI	GCNNNNNNNGC	1 cut(s)	105
NciI	CCSGG	3 cut(s)	291, 292, 756
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	4 cut(s)	171, 558, 688, 901
NlaIII	CATG	5 cut(s)	98, 104, 248, 559, 695
NlaIV	GGNNCC	2 cut(s)	733, 869
NmeAIII	GCCGAG	1 cut(s)	517
NmuCI	GTSAC	1 cut(s)	884
PaeR7I	CTCGAG	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PfeI	GAWTC	4 cut(s)	226, 518, 719, 797
PkrI	GCNGC	1 cut(s)	280
PleI	GAGTC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	156
Ppu21I	YACGTR	1 cut(s)	823
PspN4I	GGNNCC	2 cut(s)	733, 869
PspPI	GGNCC	1 cut(s)	777
PsuI	RGATCY	1 cut(s)	901
RsaI	GTAC	1 cut(s)	788
RsaNI	GTAC	1 cut(s)	787
RseI	CAYNNNNRTG	2 cut(s)	99, 619
SaqAI	TTAA	3 cut(s)	182, 194, 336
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	4 cut(s)	171, 558, 688, 901
Sau96I	GGNCC	1 cut(s)	777
SchI	GAGTC	1 cut(s)	156
ScrFI	CCNGG	3 cut(s)	291, 292, 756
SfcI	CTRYAG	1 cut(s)	157
Sfr274I	CTCGAG	1 cut(s)	137
SinI	GGWCC	1 cut(s)	777
SlaI	CTCGAG	1 cut(s)	137
SmaI	CCCGGG	1 cut(s)	292
SmiMI	CAYNNNNRTG	2 cut(s)	99, 619
SmlI	CTYRAG	2 cut(s)	137, 181
SmoI	CTYRAG	2 cut(s)	137, 181
Sse9I	AATT	8 cut(s)	79, 175, 273, 325, 427, 541, 569, 712
SsiI	CCGC	1 cut(s)	602
StyD4I	CCNGG	3 cut(s)	289, 290, 754
StyI	CCWWGG	3 cut(s)	100, 863, 897
TaaI	ACNGT	2 cut(s)	676, 728
TaiI	ACGT	4 cut(s)	482, 702, 825, 891
TaqI	TCGA	4 cut(s)	138, 237, 579, 635
TasI	AATT	8 cut(s)	79, 175, 273, 325, 427, 541, 569, 712
TfiI	GAWTC	4 cut(s)	226, 518, 719, 797
Tru1I	TTAA	3 cut(s)	182, 194, 336
Tru9I	TTAA	3 cut(s)	182, 194, 336
TscAI	CASTG	2 cut(s)	679, 733
TseFI	GTSAC	1 cut(s)	884
TseI	GCWGC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	884
TspDTI	ATGAA	4 cut(s)	17, 233, 365, 785
TspGWI	ACGGA	1 cut(s)	851
TspMI	CCCGGG	1 cut(s)	290
TspRI	CASTG	2 cut(s)	679, 733
Vha464I	CTTAAG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	777
XagI	CCTNNNNNAGG	1 cut(s)	389
XapI	RAATTY	2 cut(s)	325, 541
XhoI	CTCGAG	1 cut(s)	137
XmaI	CCCGGG	1 cut(s)	290
XmiI	GTMKAC	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.