FvH4_3g13230
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013950
Physical Location & Seq
Forward (+)
7902895 .. 7904398
1504 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g13230.t1

Sequence Viewer

Length: 933 bp
ATGTCGATAGATATGGTTCATAACTGTTGCAGCAAACAGAAGGTGAAGAGAGGACTATGGTCTCCTGAAGAAGATGAGAAGCTAATGAATCACATACACCACTCTGGCCATGGTTCCTGGAGCTCTATACCAAAGATAGCAGGTTTGGAGAGGTGTGGGAAGAGTTGCAGGTTAAGGTGGATAAACTACTTGAGGCCAGATCTGAAGAGGGGTTCATTTTCTGAGCAAGAAGAGAGAATCATTATAGATGTTCATAGGGTTTTAGGCAACAGATGGGCTCAGATAGCCAAGCAAATGCCAGGAAGAACAGACAATGAGGTCAAGAATTTCTGGAACTCATGCATCAAGAAGAAACTCATTTCTCAAGGTTTGGATCCCAACACTCATAATCGTATCATCCCAGCTGCTTCTGATAATTCCAAAAGTAACCATGACAGTAGCTCATTGGATGAAAGCTCATCTAGCACACTACCAACAACCTATTTATTCCCAAACCCTAATATGGCTTGGACTGATCTTTTCCAAGACCAATATCCAAGAGGAAGCCTACCCTCAGTGGAAAACTCTGAAATCCCGATTATCCCATCTTTTTCTCATCACTACTATCCATCCGAGCTCGATATTATAATCGAAAACTGCAAAAAATGGGGGACTGGTGGTAGCTCTGGATCCGACACTACTGCCGAACACACAAAGATGGAATGCTTGTCGATGAAACCAGAACCGGTGGATGAGAGCTGTGAAGTGCAAACTGAAAAGGACAGTTGTAATACTGTGTTGAATTATAATGGTCGGCAGACTAGTATGGATGCTAGTTCATTTGGGAGCTGTAATTTGTTGGATTTTGACTTTGTGGAGTCTACACTAGTGCCTTGTGAAATGGATTACCATCTGAGGCCAATAATGGATCAAGTTGCATGGCATCGTAATTAG

Protein Analysis

311

Amino Acids

35.22

Weight (kDa)

5.9

Isoelectric Point (pI)

57.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 17 - 64 1.4e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 20 - 78 1.4e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 70 - 113 5.7e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 73 - 117 2.2e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013950)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57560 AT1G57560
fragaria_vesca FvH4_3g13230
malus_domestica MD05G1243900.v1.1 MD10G1225800.v1.1
prunus_persica Prupe.4G119700_v2.0.a1
pyrus_communis pycom10g18970
rosa_chinensis RchiOBHm_Chr5g0021591
rosa_laevigata RLG00000032616
rosa_multiflora Rmu_sc0016972.1_g000001
rosa_roxburghii Rroxscaffold_1G00057060
rosa_rugosa Rorug05G0067500
rosa_samantha Rh5AG156900 Rh5BG156400 Rh5CG170700 Rh5DG156700
rosa_wichuraiana Rw0G007030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 626, 786
AasI GACNNNNNNGTC 1 cut(s) 317
Acc36I ACCTGC 2 cut(s) 131, 159
AccI GTMKAC 1 cut(s) 860
AclWI GGATC 5 cut(s) 368, 381, 663, 676, 915
AcoI YGGCCR 1 cut(s) 106
AcsI RAATTY 1 cut(s) 325
AcuI CTGAAG 2 cut(s) 87, 224
AfiI CCNNNNNNNGG 1 cut(s) 502
AgeI ACCGGT 1 cut(s) 724
AgsI TTSAA 1 cut(s) 781
AhlI ACTAGT 2 cut(s) 800, 865
AjnI CCWGG 2 cut(s) 116, 298
AluBI AGCT 9 cut(s) 82, 123, 404, 441, 456, 616, 663, 738, 828
AluI AGCT 9 cut(s) 82, 123, 404, 441, 456, 616, 663, 738, 828
Alw21I GWGCWC 2 cut(s) 125, 618
Alw26I GTCTC 1 cut(s) 66
AlwI GGATC 5 cut(s) 368, 381, 663, 676, 915
AoxI GGCC 3 cut(s) 106, 194, 896
ApeKI GCWGC 2 cut(s) 30, 404
ApoI RAATTY 1 cut(s) 325
AsiGI ACCGGT 1 cut(s) 724
AsuHPI GGTGA 1 cut(s) 55
BalI TGGCCA 1 cut(s) 108
BamHI GGATCC 2 cut(s) 373, 668
BanII GRGCYC 3 cut(s) 125, 280, 618
Bbv12I GWGCWC 2 cut(s) 125, 618
BbvI GCAGC 2 cut(s) 42, 391
BccI CCATC 5 cut(s) 267, 592, 616, 691, 897
BcgI CGANNNNNNTGC 2 cut(s) 662, 696
BciT130I CCWGG 2 cut(s) 118, 300
BcoDI GTCTC 1 cut(s) 66
BcuI ACTAGT 2 cut(s) 800, 865
BfaI CTAG 4 cut(s) 462, 801, 813, 866
BfuAI ACCTGC 2 cut(s) 131, 159
BglII AGATCT 1 cut(s) 199
BisI GCNGC 2 cut(s) 31, 405
BlsI GCNGC 2 cut(s) 32, 406
Bme1390I CCNGG 2 cut(s) 118, 300
BmiI GGNNCC 3 cut(s) 115, 375, 670
BmrFI CCNGG 2 cut(s) 118, 300
BmsI GCATC 2 cut(s) 351, 799
BoxI GACNNNNGTC 1 cut(s) 58
BpmI CTGGAG 1 cut(s) 139
BpuEI CTTGAG 2 cut(s) 211, 348
BsaBI GATNNNNATC 1 cut(s) 888
BsaI GGTCTC 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 109
BsaWI WCCGGW 1 cut(s) 724
Bsc4I CCNNNNNNNGG 1 cut(s) 502
Bse118I RCCGGY 1 cut(s) 724
Bse1I ACTGG 1 cut(s) 658
Bse8I GATNNNNATC 1 cut(s) 888
BseBI CCWGG 2 cut(s) 118, 300
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 5 cut(s) 396, 454, 608, 736, 814
BseJI GATNNNNATC 1 cut(s) 888
BseLI CCNNNNNNNGG 1 cut(s) 502
BseMII CTCAG 4 cut(s) 213, 293, 567, 884
BseNI ACTGG 1 cut(s) 658
BseXI GCAGC 2 cut(s) 42, 391
BseYI CCCAGC 1 cut(s) 400
BshFI GGCC 3 cut(s) 108, 196, 898
BshTI ACCGGT 1 cut(s) 724
BsiHKAI GWGCWC 2 cut(s) 125, 618
BsiSI CCGG 1 cut(s) 725
BslFI GGGAC 1 cut(s) 664
BslI CCNNNNNNNGG 1 cut(s) 502
BsmAI GTCTC 1 cut(s) 66
BsmFI GGGAC 1 cut(s) 664
BsmI GAATGC 1 cut(s) 707
BsnI GGCC 3 cut(s) 108, 196, 898
Bso31I GGTCTC 1 cut(s) 66
Bsp1286I GDGCHC 3 cut(s) 125, 280, 618
Bsp143I GATC 5 cut(s) 199, 373, 514, 668, 907
Bsp19I CCATGG 1 cut(s) 109
BspANI GGCC 3 cut(s) 108, 196, 898
BspCNI CTCAG 4 cut(s) 214, 292, 566, 885
BspLI GGNNCC 3 cut(s) 115, 375, 670
BspMI ACCTGC 2 cut(s) 131, 159
BspPI GGATC 5 cut(s) 368, 381, 663, 676, 915
BspTNI GGTCTC 1 cut(s) 66
BsrFI RCCGGY 1 cut(s) 724
BsrI ACTGG 1 cut(s) 658
BssAI RCCGGY 1 cut(s) 724
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 5 cut(s) 199, 373, 514, 668, 907
BssT1I CCWWGG 1 cut(s) 109
Bst2UI CCWGG 2 cut(s) 118, 300
Bst4CI ACNGT 4 cut(s) 26, 437, 764, 775
Bst6I CTCTTC 4 cut(s) 41, 155, 200, 225
BstDEI CTNAG 4 cut(s) 222, 279, 553, 893
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 5 cut(s) 396, 454, 608, 736, 814
BstKTI GATC 5 cut(s) 202, 376, 517, 671, 910
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 5 cut(s) 199, 373, 514, 668, 907
BstMWI GCNNNNNNNGC 2 cut(s) 284, 462
BstNI CCWGG 2 cut(s) 118, 300
BstPAI GACNNNNGTC 1 cut(s) 58
BstSCI CCNGG 2 cut(s) 116, 298
BstV1I GCAGC 2 cut(s) 42, 391
BstX2I RGATCY 3 cut(s) 199, 373, 668
BstYI RGATCY 3 cut(s) 199, 373, 668
BsuRI GGCC 3 cut(s) 108, 196, 898
BtgI CCRYGG 1 cut(s) 109
BtsCI GGATG 5 cut(s) 396, 454, 608, 736, 814
BtsIMutI CAGTG 1 cut(s) 561
BveI ACCTGC 2 cut(s) 131, 159
Cfr10I RCCGGY 1 cut(s) 724
CspAI ACCGGT 1 cut(s) 724
CviAII CATG 4 cut(s) 110, 339, 431, 918
DdeI CTNAG 4 cut(s) 222, 279, 553, 893
DpnI GATC 5 cut(s) 201, 375, 516, 670, 909
DpnII GATC 5 cut(s) 199, 373, 514, 668, 907
DrdI GACNNNNNNGTC 1 cut(s) 317
DseDI GACNNNNNNGTC 1 cut(s) 317
EaeI YGGCCR 1 cut(s) 106
Eam1104I CTCTTC 4 cut(s) 41, 155, 200, 225
EarI CTCTTC 4 cut(s) 41, 155, 200, 225
Ecl136II GAGCTC 2 cut(s) 123, 616
Eco130I CCWWGG 1 cut(s) 109
Eco24I GRGCYC 3 cut(s) 125, 280, 618
Eco31I GGTCTC 1 cut(s) 66
Eco53kI GAGCTC 2 cut(s) 123, 616
Eco57I CTGAAG 2 cut(s) 87, 224
EcoICRI GAGCTC 2 cut(s) 123, 616
EcoRII CCWGG 2 cut(s) 116, 298
EcoT14I CCWWGG 1 cut(s) 109
EcoT22I ATGCAT 1 cut(s) 344
EcoT38I GRGCYC 3 cut(s) 125, 280, 618
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 4 cut(s) 113, 342, 434, 921
FaqI GGGAC 1 cut(s) 664
FatI CATG 4 cut(s) 109, 338, 430, 917
FblI GTMKAC 1 cut(s) 860
Fnu4HI GCNGC 2 cut(s) 31, 405
FokI GGATG 5 cut(s) 383, 461, 595, 743, 821
FriOI GRGCYC 3 cut(s) 125, 280, 618
Fsp4HI GCNGC 2 cut(s) 31, 405
FspBI CTAG 4 cut(s) 462, 801, 813, 866
GluI GCNGC 2 cut(s) 31, 405
GsaI CCCAGC 1 cut(s) 404
GsuI CTGGAG 1 cut(s) 139
HaeIII GGCC 3 cut(s) 108, 196, 898
HapII CCGG 1 cut(s) 725
Hin1II CATG 4 cut(s) 113, 342, 434, 921
HinfI GANTC 3 cut(s) 88, 237, 857
HpaII CCGG 1 cut(s) 725
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 1 cut(s) 861
Hpy188I TCNGA 8 cut(s) 204, 223, 282, 412, 568, 613, 673, 894
Hpy188III TCNNGA 6 cut(s) 65, 322, 331, 346, 574, 666
Hpy8I GTNNAC 1 cut(s) 861
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 4 cut(s) 26, 437, 764, 775
HpyCH4V TGCA 6 cut(s) 30, 168, 342, 639, 748, 917
HpyF10VI GCNNNNNNNGC 2 cut(s) 284, 462
HpyF3I CTNAG 4 cut(s) 222, 279, 553, 893
Hsp92II CATG 4 cut(s) 113, 342, 434, 921
Kzo9I GATC 5 cut(s) 199, 373, 514, 668, 907
LmnI GCTCC 2 cut(s) 120, 825
Lsp1109I GCAGC 2 cut(s) 42, 391
LweI GCATC 2 cut(s) 351, 799
MaeI CTAG 4 cut(s) 462, 801, 813, 866
MaeIII GTNAC 1 cut(s) 425
MalI GATC 5 cut(s) 201, 375, 516, 670, 909
MboI GATC 5 cut(s) 199, 373, 514, 668, 907
MboII GAAGA 8 cut(s) 58, 80, 83, 172, 217, 242, 315, 361
MflI RGATCY 3 cut(s) 199, 373, 668
MhlI GDGCHC 3 cut(s) 125, 280, 618
MlsI TGGCCA 1 cut(s) 108
MluCI AATT 5 cut(s) 325, 415, 781, 832, 928
MluNI TGGCCA 1 cut(s) 108
MlyI GAGTC 1 cut(s) 866
MmeI TCCRAC 2 cut(s) 696, 819
MnlI CCTC 8 cut(s) 44, 144, 186, 201, 310, 533, 562, 888
Mox20I TGGCCA 1 cut(s) 108
Mph1103I ATGCAT 1 cut(s) 344
MscI TGGCCA 1 cut(s) 108
MseI TTAA 1 cut(s) 173
MslI CAYNNNNRTG 1 cut(s) 695
Msp20I TGGCCA 1 cut(s) 108
MspA1I CMGCKG 1 cut(s) 404
MspI CCGG 1 cut(s) 725
MspR9I CCNGG 2 cut(s) 118, 300
Mva1269I GAATGC 1 cut(s) 707
MvaI CCWGG 2 cut(s) 118, 300
MwoI GCNNNNNNNGC 2 cut(s) 284, 462
NcoI CCATGG 1 cut(s) 109
NdeII GATC 5 cut(s) 199, 373, 514, 668, 907
NlaIII CATG 4 cut(s) 113, 342, 434, 921
NlaIV GGNNCC 3 cut(s) 115, 375, 670
NsiI ATGCAT 1 cut(s) 344
PctI GAATGC 1 cut(s) 707
PfeI GAWTC 2 cut(s) 88, 237
PfoI TCCNGGA 1 cut(s) 116
PinAI ACCGGT 1 cut(s) 724
PkrI GCNGC 2 cut(s) 32, 406
PleI GAGTC 1 cut(s) 865
PpsI GAGTC 1 cut(s) 865
PshAI GACNNNNGTC 1 cut(s) 58
PsiI TTATAA 2 cut(s) 626, 786
Psp124BI GAGCTC 2 cut(s) 125, 618
Psp6I CCWGG 2 cut(s) 116, 298
PspFI CCCAGC 1 cut(s) 400
PspGI CCWGG 2 cut(s) 116, 298
PspN4I GGNNCC 3 cut(s) 115, 375, 670
PsuI RGATCY 3 cut(s) 199, 373, 668
PvuII CAGCTG 1 cut(s) 404
RseI CAYNNNNRTG 1 cut(s) 695
SacI GAGCTC 2 cut(s) 125, 618
SaqAI TTAA 1 cut(s) 173
SatI GCNGC 2 cut(s) 31, 405
Sau3AI GATC 5 cut(s) 199, 373, 514, 668, 907
SchI GAGTC 1 cut(s) 866
ScrFI CCNGG 2 cut(s) 118, 300
SduI GDGCHC 3 cut(s) 125, 280, 618
SfaNI GCATC 2 cut(s) 351, 799
SmiMI CAYNNNNRTG 1 cut(s) 695
SmlI CTYRAG 2 cut(s) 190, 363
SmoI CTYRAG 2 cut(s) 190, 363
SpeI ACTAGT 2 cut(s) 800, 865
Sse9I AATT 5 cut(s) 325, 415, 781, 832, 928
SspMI CTAG 4 cut(s) 462, 801, 813, 866
SstI GAGCTC 2 cut(s) 125, 618
StyD4I CCNGG 2 cut(s) 116, 298
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 4 cut(s) 26, 437, 764, 775
TaqI TCGA 4 cut(s) 5, 618, 630, 710
TasI AATT 5 cut(s) 325, 415, 781, 832, 928
TfiI GAWTC 2 cut(s) 88, 237
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TscAI CASTG 1 cut(s) 561
TseI GCWGC 2 cut(s) 30, 404
TspDTI ATGAA 7 cut(s) 8, 101, 204, 242, 465, 728, 807
TspRI CASTG 1 cut(s) 561
XapI RAATTY 1 cut(s) 325
XcmI CCANNNNNNNNNTGG 1 cut(s) 107
XmiI GTMKAC 1 cut(s) 860
XspI CTAG 4 cut(s) 462, 801, 813, 866
Zsp2I ATGCAT 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.